Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10261
- Subject:
- XR_001741287.2
- Aligned Length:
- 5060
- Identities:
- 63
- Gaps:
- 4990
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GACATTACGGCGGAAGGCTCTGGAGGAAGCAGAAGTGAAGGACCTCGCAGTCCTGGGACGGTGGGGCACAGAGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAGAAAGGGAGCCCCGGGCGCGGCGCGGTGAGGATGCGAGCAGAGGAAGGACACGCGGCGCCGGGTACCTGCCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGAGCGCCGGATCCAATGGGAGGAGGGCCCGCGCCGCACCTCAACCTGGCAGAGGACGTCACGACGCCAAGGCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTCGCCGGGCCAATGGGAGGCCGTCGCGGGCAGGGACGGGGCCGGGAGGAGTCGGGGCTGGGCCGCGCCGAGGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGCTGGCTGACTCCAGTTTAGCCGCCGCCGGAGAGGACGGGCGCCGAGCCGGGGCTGCGGACTTCGGCCTGCCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTCACCTCACTCCCGCTGCTTGCACCTCCCGGATGGTGCTGACTGCTCCCTAAGCGGCGGCGGCGGCGAGTCGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GAGGACGCGCCGCGGAGGCTGTTCGGGGTCGAGGCTTCCCGTCGCCGGCACTTCCTCTTGCGGCGCCCGTGCGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGCCGGCCCGGCAGGCGGGATGGCGGCCGCGGCTCCAGGGAACGGCCGCGCATCGGCGCCCCGGCTGCTTCTGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TCTTTCTGGTTCCGCTGCTGTGGGCCCCGGCTGCGGTCCGGGCCGGCCCAGATGAAGACCTTAGCCACCGGAAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAAGAACCGCCGGCGCCGGCCCAGCAGCTGCAGCCGCAGCCTGTGGCTGTGCAGGGCCCCGAGCCGGCCCGGGT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CGAGAAAATATTTACACCAGCAGCTCCAGTTCATACCAATAAAGAAGATCCTGCTACCCAAACTAATTTGGGAT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTATCCATGCATTTGTCGCTGCCATATCAGTTATTATTGTATCTGAATTGGGTGATAAGACATTTTTTATAGCA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GCCATCATGGCAATGCGCTATAACCGCCTGACCGTGCTGGCTGGTGCAATGCTTGCCTTGGGACTAATGACATG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTTGTCAGTTTTGTTTGGCTATGCCACCACAGTCATCCCCAGGGTCTATACATACTATGTTTCAACTGTATTAT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTGCCATTTTTGGCATTAGAATGCTTCGGGAAGGCTTAAAGATGAGCCCTGATGAGGGTCAAGAGGAACTGGAA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GAAGTTCAAGCTGAATTAAAGAAGAAAGATGAAGAATTTCAACGAACCAAACTTTTAAATGGACCGGGAGATGT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGAAACGGGTACAAGCATAACAGTACCTCAGAAAAAGTGGTTGCATTTTATTTCACCCATTTTTGTTCAAGCTC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTACATTAACATTCTTAGCAGAATGGGGTGATCGCTCTCAACTAACTACAATTGTATTGGCAGCTAGAGAGGTG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AGTGATATTTGAGAGGAGACTGTTTAAAATGAAACGTAATTATTATTACTTTGTTCCAGAAAACACTGGACACA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTGAAGTGGGCCACAGCATTCCTTCATATGCAAGACTGTTTTACATCTGATAATTCAGCTGCTCTCTAAAATTG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GCCTTCTCCCAGTTCCTGCTACCTGCAGGACCCCTATGGTGTAGCCGTGGGTGGAACTGTGGGGCACTGCCTGT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GCACGGGATTGGCAGTAATTGGAGGAAGAATGATAGCACAGAAAATCTCTGTCAGAACTGTGACAATCATAGGA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GGCATCGTTTTTTTGGCGTTTGCATTTTCTGCACTATTTATAAGCCCTGATTCTGGTTTTTAACAAGCTGTTTG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTCATCTATATTTAGTTTAAAATAGGTAGTATTATCTTTCTGTACATAGTGTACATTACAACTAAAAGTGATGG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AAAAATACTGTATTTTGTAGCACTGATTTTGTGAGTTTGACCCATTATTATGTCTGAGATATAATCATTGATTC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TATTTGTAACAAGGAGTTTTAAAAGAAACCTGACTTCTAAGTGTGGGTTTTTCTTCTCTCCAACATAATTATGT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TAATATGGTCCTCATTTTTCTTTTGGTGCAGAACCGTTGTGCAGTGGGGTCTACCATGCAATTTTCTTTCAGCA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CTGACCCCTTTTTAAGGAATACAAATTTTCTCCTTCATCACTTAGGTGTTTTAAGATGTTTACCTTAAAGTTTT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TCTTGGGGAAAGAATGAATTAATTTCTATTTCTTAAAACATTTCCCTGAGCCAGTAAACAGTAGTTTAATCATT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GGTCTTTTCAAAACTAGGTGTTTAAAAAAAGAGACATATATGATATTGCTGTTATATCAATAACATGGCACAAC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AAGAACTGTCTGCCAGGTCATTCTTCCTCTTTTTTTTTTAATTGGGTAGGACACCCAATATAAAAACAGTCAAT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ATTTGACAATGTGGAATTACCAAATTAAAAGAGAATACTATGAATGTATTCATATTTTTTCTATATTGAATAAA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CAATGTAACATAGATAACAATATAAATAAAAGTGGTATGACCAGTGCTTGTTTTTCCTTGTGTGTCATATAAAA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TTATCAGTATTGATAGGCCAATTTCTAAAGCTGATGTAAAAACACTAACATATTAAATATTTGAGATATGCCTA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AAGTAGCTAAACAGGAGCCAGGCATTGTTCGAAAGCATTGTCACCCTTACAGTTCTGTGAGGTAGTAGGTACTA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ATATAAGGTTAAAAAAGAAAAAAACTAACTCACCCAAGGTTACATGGTAGAGTCACACCAGGCGGTTTAATTCC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGAGCCTAATGTCATTCATTATGCTAAGACTACCTCATTTTTTCATGGCAACTTCAGTCGTCACCCTCGTTTGA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GTATATTTTGATTTGACTACTACTTCACCCAAGTAGCATAACAGCTGCTTTCTCTCAGCCTTTTATATTCTAGA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ATCATATGCAGTAACATTCCCATTAATAGCCTCACTAAATTGAAGGACAATTCTACAGAAACATCCATGTTATT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TGTGTGAGGTATAATAGGAGACCCAGAGCAATTCAGGTTTATGAGCTACTACAAAGGTCCACAATGTAGTCTGC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AATTTGAAGAGATTGTGAAAGAACCCAGTTAATCATCCAGCACTGTAGGATGCAGCAATTGTCCTACATGGTAA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CTCTGTGAGGAAGATGATAGCTACTACTGTGGAGATCTTAAGAGGAGTTTTCAGCTTAAATGCCAAGTTAGAAG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TAGCACATGTTGGTAAAAAAGGTCATATTTGTAGTTTTCTGCTATAGGAAGTATCAAAGGGTAGAAAACAATGT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CTGTGGATTAAGATAAACTCTGTGGTTAGACAGTCTATATTGCCTTAGATTGTTTGTTTGTTATAAAGAAAGAG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TGAGGAATTCTCACTAGTATTTTTTTTTTTTTTTTTGAGAGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GGTGTGATCTTGGCTCACTGCAACCTCCACCGCCCGGGTTCAAGCAGTTCTCCTGCCTCAGCCTCCCGAGTAGC 3404
Query 1 -----------------------------------------------------------ATGGGGTTTCTCCAT 15
||||.|||||.||||
Sbjct 3405 TGGGATTACAGGCGTGCACTACCACGCCTGGCTAATTTTTTGTATTTTTAGTAGAGATGATGGAGTTTCGCCAT 3478
Query 16 GTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCCTCC----------------- 72
|..||.|||||||||||.|||||||||||||.| ||||||||||||||||||||||
Sbjct 3479 GCTGGCCAGGCTGGTCTCGAACTCCTGACCTTA--TGATCCGCCCACCTCAGCCTCCCAAAGCGCTGGGATTAC 3550
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3551 AGGCGTGAGCCACCATGCTTGGCCTACTAATACGTTTTGTTTGTTTGGAGACAATCTATCTCACTCTGTCACCT 3624
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3625 GGGCTGGAATGCAGTGGCGCAATCTCGGCTCACTGCAACCTCTGCCTCCTGAGTTCAAGCAGTTCTCCTGCCTC 3698
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3699 AGCCTCCCAAGTTGCAGGGATTATAGGTGCCCGCCACCACGCCTGGCTAATTTTTTTGTATTTTCAGTAGAGAC 3772
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3773 AGGGTTTTACCATGTTGGCCAGGCTGGTCTTGAACTCATGACCTTAGGTGATCCACCCACCTCAGCCTCCCAAA 3846
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3847 GTGCTAGGATTACAGGCGTGAGCCACCGCACCCAACCGTTTTTTCTAATAACAACAGAAAAGACAATTCCTCGT 3920
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3921 AGGGAGTAGCTGGCACCATCATCGTGTAACCTCAGTTCAGGTAGCTTGGTCCCATTACTAGCTTCATATGCGAA 3994
Query 73 -------------------------------------------------------------------------- 72
Sbjct 3995 TAAGAACAGCATCGCATTCTGAGGCACCACAATCTTGTAGCAGGACATAATTCCTCTGAGAATTTTTGGTAAGT 4068
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4069 CAGACCTAAGCTATAAGGTAAAAATCGCTACTGCAATAGGCTCCATTGTTGAATAAAAGAAAGGGAAATGTCAT 4142
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4143 TGATAGTGATCTTAAAATATTTAATAGTCTTTCTTTAAAATCCAAAATGTGATTCTTACAAGTTATGTGCCACA 4216
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4217 TGAAGCAGGTGTTATTTTTTGAGAAATGCAGGTGATAACTGAAAAACATAGCACTGAGGTATTTTTTATTTTTA 4290
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4291 AAATTGAAGGAAACAAAGTCTGGATCTAATTATTTTTACATTTACAAAAACTGCTACTGCTTGGCTCTTTTGCT 4364
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4365 ATAAGTTTAGGTTCTGAATACATGACAAGAGTATGGGAAAGAGCAGAATAATAGTACACGCAGTTTTAAAAGCT 4438
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4439 ATGCACATCATAACCTGGAATAATGATTACACAGCAAGAGGCCTGAGTGGAGGTAGGCTAACAACACATTTTGA 4512
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4513 CTTTCTCCTCAAAGGATAGCTTTGAAAAACAAGTGTAACCAATTGTTACACCAAATTAAAATGGCAATATTAAA 4586
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4587 TCGGTAACAAAACGATCCACATTTTATACAATATTGTATTTCCAAACATACATAGGTCATGAAAATCAGAGAAC 4660
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4661 CTAATATAGCACCGTTGAAACCATTCATTATCCTTCATGTGTGTATGCAATTCAGAATTTCGGCAGAAGACAAC 4734
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4735 AAATGGAAAATGCCTTTCGTTTCTATAAATCATTTTGGATTTCAATTAAATCTTTGCCTTAGTAAAGGGTATTC 4808
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4809 TTATCTCAAGATCAATTAGCCGTTTTTAGCTCCACCGTTTTGGAAGTAAAAATGATGAGCTACATCTACTTTTT 4882
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4883 AATTTAAAACCAAGAACCAAGCAGTAAGGACAGCAATGTCAAGAATATCACATTGAGAACCACACAGAACATTA 4956
Query 73 -------------------------------------------------------------------------- 72
Sbjct 4957 TAAAGAATTTGGTGCATGTTTTAACAACTACCAACTGATGTTAACAATGAAAAATTTACAAAGGTAAAACTTTT 5030
Query 73 ---------------------------- 72
Sbjct 5031 TTTTTTTTTTTGCACTGACTGGTTTCAA 5058
