Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10261
- Subject:
- XR_001745254.1
- Aligned Length:
- 6340
- Identities:
- 65
- Gaps:
- 6268
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAGCAAGACTCCGTCTCAAAAAAATAAAAATAAGTAAATAAATAAATAAAAATAGTAATTGAGTAATTCATAGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAGATAAACTTTCATTACTGGAAAATGAAAACATTATTATCTTCAATTTTGGAGAGAGAATACCCTTTTTTATT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TAAGTAAATGTTTGTAATAAAAACTTATCTAATAAAAATAAGGTGCTATCTACTGAAGTGATTAATATTCAGGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GACAGTGGAAAATGATTCGATTTATATTGATTTTATCAGTCTACATTTTTCTTCTGGATGTAGGAAGCAGGTAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTTGGACATCATAGTCTCTTAAAAAAGGTTGTGGAATGAAATAGTGTGTCTTGCCTTAATTGGATTAAAATAGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTCTATTGAGACTTTCTTTCTTATTTCTCATTTGGAATGGAAGCTCAAGACACCTGGTGCATTATTTGAGTCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGTGAGGGATCAGTAGAATATCTTAAGCACATGATGACAGAATACTGAAGACACAATGGCTAATTAAGTGTAGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATAGTTCAATTTTATTTCAGGGAGACAGATTCATGTTTGTTTTCAAACTAAATTCTTTGCTTAACTTCCTTGAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TCCACAAAAATATAAAACATTATTTCAAAGAGAAATATTTTGAGGCTAATGAAGAACATATGCTACATTGTATT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTAAATGAATGCAAGATGGCATTGTTAATTTGCTTCTATTTTAGTTGTAGGCTTATACTCAGGGAGACATCTGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATTAAAGGAGCTTTATTTCTTCTGGGTGGGACACTAATGTAATTTTATAGGTAAATACAGTGGAAAACATCATG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AATATACAAATCTAAGGTAGATGATAAAATTTAATACCAGTTAGGCTTTATTGAGTGGTTACTAAGTAGCATTA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TCTAATTATTTCCCATAATAATACTATGGTAGAGACACCATTATTAGTCTCATTTTTCAATGAAGAAACTGGGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTTTGAGAGTTCCTGAAACTTGCCCAAGGAAATATATCTAATAAGTAATGTTTGCCAGTGCTTCTTAAACTTTA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ATATGCATGCAGATCACCCGTGGCTCTTGTTAAAATGCAGATTTTTATTCAGTAGATCAGGACAGAGATAGTAC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ATTTCTTATAAGCCACCAAGCATAAGGTAATGCTTATGCTCCTGGTACAAAGACTATACTTTGAGCAGCAAGAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGTGAAATTTGAATGTGAATTTGATTGTGAAATTCAAATTCAGGTGTGTCTGGCTTCAAGATCTACATTCCTAC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTATTACATAAATACATCCTTTGACCTAAAGAAGTGTATAATTATACAAAGGAAGAAATGAAGCTAAGTAGTAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTTGTAAAGTTCTATTCATCCATGCTGAATAAGCATTCGATGATCTAGATAATAGAATATTCTGGAAGGCTATT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AATTTTTCAGTGAATCCTGTATCAATTAACCATTTTCAAAAGAATGATTTAGTGAAAGAAAATATATGGTATTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AAACAATTTTCATTTTTATTTGAGTTTGGAAAATTTTAAAACCTTCATTATTCTTCAGTAAACATAAGATATCT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTGAAAATATAAATGTAAACACTGTGAAAGAAAAATAAATGTAGCTGGTTGTTTTCTTATAAGCCTACTAAAGA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AATTACTTAACAGTCTTTGATAATTCAGGTTTTTGAAAAAAGGAAGTTAAAAAGTGGAGGGTTTTTTGGTGAAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTATTGCTTTTTAGTATCTGCAGTAATTGTTATTGTGCATACATGAACACAGATTTTATGTATTTGAAGATTAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ATTGTTAATCCTATCTTTTATAATATTTTTGAATAAAAAGTCAATTTAACTTATTGCCTTATGTGCTAGCTTGT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTTTGTTTATATGTTTGACTCTAAACTACTTATTGCAACTTTATTTTACACTCATTTGTGCTTTTGTCTTTTGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TCAGCTCCATCTACCAGCCTTATGAAGAGCTGAAAGATAAAACGATATCAAAACCTTTTAGTTGCTATCTCTTT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GATAGCAATTTTGCTTTTTTTTTGTTGGGGGTGGGGGCTTGTTACTATATAAAATCATGTTATGATTCTGATGA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CTCTTATGTATTAGGCCCTTACAGAAACTCTGTGAAGTAGACACATTAAACATTTATACATTCTTATTTTATAA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ATGAGGAAATTCAGAAGACCAATGTTCTTATCCAAGACTGTGTAGATAGCATGAGGTAGTGGTAGAATTCAACT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TTATGACTTCTGTCTAAAATCCAGTTTGTTCCCCTCTAAACCCACATTCATAATTTGAACTATTTTATTTCCAA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GATGTGTCTGCTAAATGACTTTTTTTTCTGACATTTGCTACGTCTATATCTCAGGAACTGGCTCCCTGCAATGA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TTATATAACTAATATCATTGGATTATTCTTAAGCAATCTCAAATCAAACAATGTTTTGAAGCAAAAAAGATATA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 ATCATTTAACATTATTATGAACATACATTTCAGCTTGAACTAGGCTGAAATATCTGCAAGTGTTAATGAACAAT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTACAGGAGAAAGCTTTTCAACAAAGCAATCCAACCTCCAATGCGGCCTTCTGAGAGATGGAGATAAATGAAAT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CTGTGGTCTCATTGTTCACCAACCAGCCCAGCCAAGGGGATCTACTCAGTAAATGAAGGTCTCTAGGCATTTTG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CTCAAAGAAAATAGGATCAAGGTTATAATAAACAAATTTTTCTGGTGACATTTTCCAATTATGGCATATTCTGT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTCCCTCTGGTTGTCCTGGTAACTTTAATTAAAGCTGCTCCAATCTATTTTGAAGCTTTAAATACTGTAATATA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CTCCAACTCTTAATTCAACCTTGATATTGAGCTTATGATTAGATAACAAAAAAAGGAACATGACAAATGTTTTC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AAGTGATTTTTAAAGTAAGTTTTGTTTTTGTTTTCCTGGAAGTGCTAGATGATTGTTATTTAACCAAATAGTTT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TTTTTTTCTTTAACTCTTAGGCCAGTCATTCTATATCATTTCTATTTGTCAGCAGTGCCAGTAACATTTTAGAA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 AAATGTAGCTTTCTGGTCTTTATCTGTAGGGATTTTAACTAAAAAATGTGGAAAGAAACTCAAGAAAAATTAGA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TACAAAGAAGTGAGAAGGGGATCCAGGAAGGAATTCTGAAATTCTTTAGAGACTCAAAGAAGAATACAAAATTT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 ATCATGTTTGGCTATTAGGGGTCATTGATTTACTTTTGTGAGAATAGATTCAATAGAATATACTGGAACAGAAT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 AAAGACTGTAGTGTTAAGGAGTTATTGGAAAGTGAGACATTGGCAAGAAATTTATCTGGATTTTCATGAAGTTT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GGTAGGACAGTGAAGGAAAATGTGGAGTACTACTAAAGAATGTATTTCTTTCTTGTCTATTTTTGAGACTGGAG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 GACATATAAGCATGCTTATAGCTAGAAAAGCAGAAATCCATGAAATTTGAAAATAAGAAAAAATAGTCTGAATG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TAGAAGGATGATTCCAGAAAAAGCAGACAGAGAAGATCGAGGTCATGCAATTTTCTTTGAAAAGATGGCGGAAT 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 ATTTCACTTGGGACAGAAGGAATATTATTAGATATAAATAAAGACAGTTTTTGTTGAAGATTTGGGAGAGCAAA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 GTAAGAAAAGGTGAAAGGAGTCTATTATGGGTAAGTAAAATTACTGAGGAATAAAATCTAGGGCCTTCCTAACA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 CTGAGAACAATCAGAAGATATAAAACACCCTCATGTTCTAAAAATGAGGCCCAATAAAAATGAGGCCCAAGCTA 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 CATATGAATTTCAAAGAGCTTTCTGAAAACTCTGTGTGTTTATGTGGATATGCATATTTTGACCATTAATCCAG 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 AATCTATCTGGAGGGTATAAATTATCCAGGCCTTTGAGTCTGAGTGGTGAAGGGATTAGGTAATCCACTAATTG 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 TTTTGCAAAATTGAGATTACTTTTATTTATTTGGATTTGATACATGCCTGTGGATGTTAAAAGGGAAGTGCTAA 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 GGCTCGACATGTTTACCCAGTGACAGGGCAATGAGACACGGCATCAAGGGGCACAAACTTACATAAAAACAAGG 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 CAGTGAGATGGAGCTGGTCTCAGATAGGACCCAACAGGGCTTCCCTCCGGGAACAAAACTAGTTTAGCAGAAAG 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 AGGGTAGAAATACACTGTCAAATGGGAGCTGAGGGGCTGGGGTTTAAATGACCCTCAGAAGCATGACATTGCAA 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 TTGAATGTCCTGGGTACCTCCAAACAACTAGGAAAGTATCTTAATAAGGGAACAAGTCAGTGTTGAACATCGAT 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 CAGCCCCAGAGAGTAACAACACATAATTATAGTCAAGAAAAGCCATCCATTGCCAACTTTCTCTTAGTGCCATT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 GCTGAAATCACCGTGTTTGAGCTGCTAAGAAGTGTCAAGATGAAATCAGGAGGAAAAACTCAGAGAGTGGCCAT 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 AGACCTCTACCACATTCTCCATCTGAAGTTTCTTGGTCTGAAGCAGTACTAACCTGTTAGTAGAACATCAGAAT 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 CATGTGGAGATGCCTTGAAATGTAGTGCAGGTGCCAACTAAGGAGATGTGCATGTTTTCTGCTGACAGCGAAAG 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 GCCAAGTAGGGCCTACGACACTGTATGTTAACATCTTATTCATTGTATGAGCAGGAAGTGATGCTTGTAGCCCT 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 TTACACCTTAATATATGGTTTATAACATTTGTCCACGCACCTTGGCATTTGGTGAGTGTCTATTTTACTGTTTT 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 CTTTAGGTGGTTAAAAGCTGGTTGTGAGGGGTTTAGGTTGATATAAAAACGCTCTATTTTCTTCCACTTAATAA 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 ATAATAGGCTATCAGAATTTTCACTCAGAACATCAGGTTTTTCTGAAGCAGATTACTGCTTAAGTGGGAGATAC 4884
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4885 CTGTCCTGCTTGATATCATTTGTTAATGTGGTAAATGGAAAGCCCCAGATACACCATCACATTTCCTCTCTTAC 4958
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4959 GTTACACACTGGAGCAGCATCTTTATGGATTTTTAAGTCTAAAATAATTATAATGGTAGGAATTTGGGGCCAAA 5032
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5033 CAGAAGTGATGGTGAAACACTAAGTGCTGTGTTTACGACCTCTTGAATTACACTAAGGAGACAGATCCATATAC 5106
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5107 CTGTAACTGTGCTATACTCTCTACCGCACTCAGCATTTTAATTTTCGTAACATTTTGTTCTGATTAATGTATTA 5180
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5181 TTTAAAGGTTAGCAGTGAAGTTTTTTTTTTTTTAAAACAACTCCTTCCTTCCTTCTTCTTTTTTTTTTTTTGGA 5254
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5255 GTTTGGCTCTTGTTGCCCAGGCTGGAGTGTAATGGCGCGATCTTGGCTCACTGCAAACTCCACCTCCCGGGTTC 5328
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5329 AAAGGATTCCCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACCCACCACAACACCCAGCTAATTTTTG 5402
Query 1 --------------ATG-GGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCGCC 59
||| |||||||.||||||..|.|||||||||||..||||||||||||||.||||||||||
Sbjct 5403 TATTTTTAGTAGAGATGCGGGTTTCACCATGTTAGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCGCC 5476
Query 60 CACCTCAGCCTCC------------------------------------------------------------- 72
|||||||||||||
Sbjct 5477 CACCTCAGCCTCCCAAAGTGCGGGGATTACAGGCGTGAGCCACCATGCCCAGCCAACCACACTTTCTGTTTTAA 5550
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5551 ATCTCTCAGTGCTAGAGAGTGCATTTTCCTCCCACATTCCATGGAGTAGTGTCAGCACTAAATGAGTATTTGAA 5624
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5625 CAAAGGCACTTTTGAAAAAAATGTGGTAATCAAATATACCTTTAAGATAGAAAGCACAATTAATGGTAGAGGGC 5698
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5699 ACCTAATTATTTAATGGAAGGTTCAGACAAGGAAAGGGTTGGGGCAACAGTGATAGGCTCTGTCTTCTAAATGA 5772
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5773 AATCTCTTGGAAATGAGATTCTTTGAGTTGGCTTTAGGATCAGAAAGCACTATCTAATGTAAAATTTATGTTCT 5846
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5847 GGTAATGCAGCATGGGGGAAAGGGAGTGTTGGGTTTGTAATTACTTTGAGCAAAATGAGAATTAGCTCAAGTGG 5920
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5921 CTTGCAAAACTCACACAGGCAAAAACTACACAATTTGTAGAGCCTAGTACAAAATGTAAATTTGAGGCTCTTGT 5994
Query 73 -------------------------------------------------------------------------- 72
Sbjct 5995 TAAGAAATTATTAGAATTTCAAAATGGCAGCATCAGAGAATGAAACCAAACATGGGGTCCTTCTGAATGTGGAG 6068
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6069 TCCTCACTGAGTCAGTCAGCCTCGTCTGACTGCACAGGTCTCACACCCACCAAAGCTGGCTGGTCCTGCGCATA 6142
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6143 GGTCGTTAGTGGTAGAGCTAGAACCAGAACTTGGGATTCTCAGCTACTTGTACAGTGTTCTTTCTATGATGATA 6216
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6217 GTCATCAAACTTTACTTGGGGACTTGAGAGTCTGTGAAATCCTTGATGATTGTTGAAAGATAATCCCAAAGTGA 6290
Query 73 -------------------------------------------------- 72
Sbjct 6291 GGCAAAAAAAGAAAAAAATCCGTATGTCATTTCACCTCTTTTTTTTTTTT 6340
