Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10261
Subject:
XR_001746322.1
Aligned Length:
5115
Identities:
63
Gaps:
5043

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACATCGGCCCCAGCCCCTGCCTGGGTCCCCATCCAGGACCCCCTTCCAGTCTCTGCCCCTGGCCTGGCCCCCAT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCCGGCCTCGGCCCTCGTTCCACCCCCTGTCACAAATCCCAGCCCAGGCCCTGTCCCAGCCCCATTCCCAGTGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTGCTTAAGGCCCTGGCTCAACCCCGTCCCTTGCTGCAGTCCCCATCACAGCCCTTCCTTCCATCCCACTCCCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCCCTTGTTCAAGCCCCAGTGTCCAGCCCAGCCCAACCCATTATCTCAGCCTTTGCCCTCATCTCTGTGTTTAC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCAAGTCTCTCCCTCTAGTCCCCCCTATCTCTCATACTCTGCCCCTCTCCCAGCCTAGACTCAAGTCTGGGTTT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CAGCTGCCGCCAGCCCTATTGCTGCTGTTGCTGTTCTCTGTCCTTGGCCCAGGGGCTGGAGGCCTTTTCCTGAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGATTACTCCACCTGCTCACCCCGCAAGCTGAGTCCTTTCCGCTCCTTTGCCAGCACCGAGCTCTTCCACTTCC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ATGTTCCTGAGGACACATTCCTGGCTGTTTGGAACCTCATCATCTTCAAGGAGCAAGGGGGAACTTTTGGGGAC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CACTGCCCAGACCAAAGTGTGACTGTGTATTTCCGGTCCGGGGCACCCCCTGTCATCAATCCCCTGCATACACA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CTTCCCAGGGGACACAGCTGTGCCTGGGGTTTTCTCACTGACCCTCAGCTGGACACTGCCCAACCGCACCTCAG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCATCTTTAACGTCAGCAGCCCCTTACCTGGGGACTGGTTCTTGGCTGCCCACCTTCCCCAGGCCCACGGCCAC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ATCTCTGTCAAGGGTCTCCAGGATGAGTGTCAGTACCTCCTTCAGCCGCAGCTGATTGTCCGGCGTTTGCTGGA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CGTCGCTGTGCTGGTTCCTGGCCGGCCCTCAGAGCAAACCCTCTCCCCACACAATCGCTCAGCCCTGTACAAGG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TCTTTGTGCCCAGCTTCACTTACAGGGTTTCAGCACAGCTGGTGTGTGTGGGGGGCCGTGGGGTATCTGCCTGC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CCCCTGTCACTGCGTCTGCGTCCCAAAGCCCCACCCCTGCACAACTCAAGCTCTGTGGCCTGTGGAGGTGCCTC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AGGATGCCAGCTGGAGCTGGCACTGCCCCCCTGGGGGCACTGGGTCTACGTGCGTGTGGAAACATCATCCCGGG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GCCCTGGTAGGACCATCCGCTTCCAGCTGTGTGTGCGGTTGCAAGAGTGCCCACAGCCCGGCCTGCTCCGAGCC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CTGGTCCCTGGAGCTGCCATGAACATGCCCCAGTCCCTGGGCAACCAGCCACTGCCCCCAGAACCGCCATCCCT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TGGAACCCCTGCGGAGGGGCCTGGGACCACGTCCCCACCCGAGCACTGCTGGCCAGTGCGCCCGACTCTGCGCA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ACGAGCTGGACACCTTCTCTGTCCACTTCTACATCTTCTTTGGCCCAAGTGTGGCCCTTCCCCCTGAGCGCCCA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GCCGTGTTCGCCATGAGGCTGTTGCCAGTGCTGGACAGTGGAGGCGTCCTCAGCCTGGAGCTCCAGCTCAATGC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GTTTTTCTGTTCTGAGAATGGAGAGCTCCGTGCGCCAGGAAAACGTGACGGTGTTTGGATGCTTGACTCACGAG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GTGCCCTTGAGCCTGGGGGATGCAGCAGTGACCTGTTCCAAAGAGTCCCTGGCCGGCTTCCTCCTCTCTGTCAG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TGCCACCACCAGGGTTGCCAGGCTGCGAATCCCATTCCCGCAGACGGGGACCTGGTTCCTGGCCCTCCGCTCCC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TGTGCGGGGTGGGGCCTCGGTTCGTGCGGTGCCGCAACGCGACGGCCGAGGTGCGGATGCGCACCTTCCTGTCC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CCATGCGTGGACGACTGCGGGCCCTACGGCCAGTGCAAGCTGCTGCGCACACACAATTATCTGTACGCAGCCTG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CGAGTGCAAGGCCGGGTGGAGAGGCTGGGGCTGCACCGACAGTGCAGATGCGCTCACCTATGGATTCCAGCTGC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TGTCCACACTCCTGCTCTGCCTGAGCAACCTCATGTTTCTGCCACCTGTGGTCCTGGCCATTCGGAGTCGATAT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GTGCTGGAAGCTGCAGTCTACACCTTCACCATGTTCTTCTCCACGTTCTATCATGCCTGTGACCAGCCAGGCAT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CGTGGTTTTCTGCATCATGGACTACGATGTGCTGCAGTTCTGTGATTTCCTGGGCTCCTTAATGTCCGTGTGGG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TCACTGTCATTGCCATGGCTCGTTTACAGCCCGTGGTCAAGCAGGTGCTGTATTTGCTGGGAGCTATGCTGCTG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TCCATGGCTCTGCAGCTTGACCGACATGGACTCTGGAACCTGCTTGGACCCAGTCTCTTCGCCCTGGGGATCTT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GGCCACAGCCTGGACAGTACGCAGCGTCCGCCGCCGGCACTGCTACCCACCCACGTGGCGCCGCTGGCTTTTCT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  ACTTGTGCCCTGGCAGCCTTATTGCAGGCAGTGCCGTCCTGCTTTATGCTTTTGTGGAGACCCGGGACAACTAC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TTCTACATTCACAGCATTTGGCATATGCTCATTGCGGGCAGTGTGGGCTTCCTGCTGCCCCCTCGTGCCAAGAC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TGACCACGGGGTCCCATCTGGAGCCCGGGCCCGGGGCTGTGGTTACCAGCTATGCATCAACGAGCAGGAGGAGC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TGGGCCTCGTGGGCCCAGGAGGGGCCACTGTCAGCAGCATCTGTGCCAGCTGAGAGGGGCTTTGGGCCTGGCCC  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TGAGGGGATATGAATGCTTCCTAGAGTTCTTTCTGGGGGTGTGGAGCCCTCTTAGAAGGAGACAGGCTGTATTT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  CTTGAGGACATGGAGTCTTTCTCAAGGACACAAAACTCTTCCAGGGACCTGGAGCCCTTCCCAGGACATGGAGA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  ACTTCCTGAGGGCCTGGAGTCCCCCTGCATCATGGAGTCCTTCTTAAGGACTGGAGCCTATGCAGGCACAGAGT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  CCCTCAGGACCAAGGAGTCCCTCCTGCAGGTGTGGAGCCTTTCCTGGGATGCAGAGCCTTCCCAAGACATGGAT  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TCCTTCCCAGGGAGACAAAGCCCTGTCAGGAGCACAGCATCTTTCCAGAGGAGGTGGAGTCTATCTTGGGGAAA  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  CCAAATTTCCAGATTTTCCCAGAGGCTCAGCAACTCTGGCCTCAGGCTTCCTTCCCAGAGGCAGCGTCTGGGCT  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  GTGCTGTGCTGTGGAGGAGGGATTGCAGGATGGATGGAGCTGGGACTGGGGCTGTCTGGGTGGCTGGTATCCTC  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  GTTTGATACAGGTGGAGTCTGTGTGTCTCCAGTGATTGATTGGTTCAGAATGGTTCTGTGATGCCTTTTTTCCC  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  CCTGGGGTCAGGGGTGTGGGGAAGTGGGGAAAGAGGGCCCCTCAGGGAATCAGCAGGGCTGATGGGAGCTACTG  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  CCGGAGGCTTTTGTCACACCCTGTACACAGTCTGATCCCGCTCATCTGGGCCCTGCATTCATTTCTAAACAGTT  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  TCTAATGCCTATTCCCCAATTCCTATTGAGCCCGATTTGCAGTATCTGAGGGGTGTGTGTGTGTGTGTGTGTGT  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  TTATGTATGTATACGTATGCTGAGATGATTTAAATCAGTGAGACAGACTTTCCTTATGATGCCCACACCCAACA  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  CAGAAGGAAGCCGAGGTCCCAGGAAATTGGAATAGCAGGTACACGTCTCAGGTGTGCAAGAAATATCACAAGAA  3700

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3701  TGTAACTTCTGTTTTGAGCCCCCATTTTTCCTGAGTGCCAGAAAAGATCATTTGTCCATTTGGGATTCCTTCTC  3774

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3775  TTTCCATGAGGGTCATAGCTGAGTTCTGAGGGTCTTACATAATGCCAAGAAGTTGGGAGAGCATTCTCACTGAT  3848

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3849  CACCAGTGTCCATACTTCATCCATCCCCGGGATTTCCATCATTCCATCTGGTCCCCAGTCAGAGGTCCAGACAG  3922

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3923  TTCATCTGGGATGCAGAGAGATTTCTTGTTCCCATTTGCATTACTCTCTCAGTCCTAAGGTTCTCTCTGCCACT  3996

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3997  TCTGGGCCATATGTGGAGACCCGTAAAGTTGTCTAAGGCCTTGGCTATGCAGACACACCTTGAAGCTGTTTCTG  4070

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4071  CTCTGGGTTTTGACAGACAAGGCATGAGTTGCTGCATCTGTTAAAACTGCAAATCTATCTTGGCCTGGGGTGTG  4144

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4145  GAGCTCAGGGACTCTTCCTTTTGGGACCCTCTGTGTCAGTATTCTCACTACATCCTCTCCTCCTCTCTCTTCTT  4218

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4219  TCCCCCTTTCGTTAATATTGGAGGTGAGGAAGCCTTACTTAATGTTTTCTCCTGAATCTTTTTTTTTTTGAGAC  4292

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4293  GGAGTTTTGCTCTTGTTGCCCAGGCTGGAATGCAATGGTGCGATCTCAGCTCACTGCAACCTCTGCCTCCCGGG  4366

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 4367  TTCAAGTGATTCTCCTGTCTCAGCCTCCCGAGTAGCTGGGATTAGAGGTGTGCACCACCAAGCCCAGCTAATTT  4440

Query    1  -----------------ATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGACCTCAGGTGATCCG  57
                             |||||||||||||||||.||||||||||.|||..||||||.|.|||||||||||||.
Sbjct 4441  TTGTATTTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGCTCTCAAACTCCCGGCCTCAGGTGATCCA  4514

Query   58  CCCACCTCAGCCTCC-----------------------------------------------------------  72
            |||.||||.||||||                                                           
Sbjct 4515  CCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGTTGTGAGCCACCGCGCCTGGCCTCTCCTGAATCTTTTATC  4588

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4589  TATGCCTTAAGCCTTTTCTGTTCCCTTCAGGACCTAGGCTTTTGAAACCCAAAAGCCAGGAAAACATGCCTTTG  4662

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4663  TTATCTGCTTTCTGCAATCACGTCTCTTCCATGGGGCACTGAGCAGAGAATGGTGTGGCCAAGTGAGTAGTGAG  4736

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4737  AAGCAGTGAGGAGGTGTGAGCTAGGTGTCTGTTCCCATTTTAGAAAATACTGTTCCTACATCAGAAATACCACA  4810

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4811  TTAAGACGTATAGAGCCAGGTCACTGGGATGCTTGAACCCAAATAGCTGGGATTCTGGACAGAGTCAGCAGAGT  4884

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4885  ACAGAAGGCTCTGAAGTGGGAGACGGAGCTGGGGTGCATCCCTCCCAGTGAGGAGGGGTCATGAGGGGCGTCTG  4958

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 4959  GGAAGAGGGACATTTGAACTAGGATTAGCTGAGTTGCCATGATGCTAAGATAATGGGAGAGTGTTCTTTGTGGT  5032

Query   73  --------------------------------------------------------------------------  72
                                                                                      
Sbjct 5033  CACCAGTGTCCACATGGCATCCCTTCCCTGAGATTTTCATCACTCCCTGTGGTCTTCAGTCAGTAAAGCTCTTA  5106

Query   73  ---------  72
                     
Sbjct 5107  GAACACTTG  5115

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