Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10261
- Subject:
- XR_922296.3
- Aligned Length:
- 6708
- Identities:
- 64
- Gaps:
- 6636
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAGCCCAGGTCAAGGCCCTAACAAAAGGGCCCGCCTATGGCCACAGTTTCAGGCCCTCCTTTCAGTCATGGACT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTTGAAGCACGATTTCCTGGTGCTTTCGCCCCTTTCACCGACCATTTCAAGAGTCCGTAGTTCTCGCCTGGGTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGGATTCGGTATAAGTGAGCCTGTTTACCATCAAAGAAAATGGTGAAATGTCTTCTGGAGACGATGTTCTCTTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGGTTCTAACCCTGTCACTCAGTGAGACCCCCAGAGAAGCCTAGTTTTCAGATTATTCTAGTCCTTGGCAGGCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAAGATGTCAACAACACGGTTGGAAACAACCCCTGAGAGGTCACATAGCGCGCACTCAGCTTTACAGATCGTCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGGCAGCGACCCCTGAGAGGTCACATAGCGCGCACTCAGCTTTATAGATCGTCCAAGGCAGCAATTAGAATCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCAACTCGGAGAGGAAAAAAAGCTGTTAGCGGAATGGAGGCTGACCATTATCTGTAGTAAAGAATCGGAAGTAC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGTACAAAAATAAATTACCGAAACGCAACATGCGTGAATTTCACACAAAAAAATGAAGTTGAGGGAAAGAAGCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGACATGGAAGAGTTCATATTGCGTGGTTCCATTTAAAAACTAGCCCATGGTGTTAATGAGCATAGTGGGGAGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ACAATGACATGAAAGAGCCACCAGGGGGCTTTTGAGGTTCAGGATCCCCAGCCAGTGAGCCTAAAATGGGTAGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGGAAAAGATATTTCTTACCCTACGCACCCAGGTCCAAGTCATCATTATTTTGTCTGAAATTTATCTTCCTAAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGATTTCTCTGCTTCCCCATTGTGCCTTAAGAGTTAGTTTTCCACAGAGCAGCTCGAGATATCTTTTCAGATCA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTATATCCCTTTGCTTAAAAACCTCTAACAGCTTCCTATTAGGCTTAGAATAAAGTACAAACTCCTTAATGTGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ACTTGAGTGTTTTACGTATCTTATCTCACCTTTATGAGCTTCATGTCAGAACCCATCTCTCACCACTCTTCCTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CCCCGCTCCCTGATTTAAACAGTCTGGCACTTTACTTATTCATTGAACCCACTGGGTTTGCTCTTGCCTCCAAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TCTGTACCCAGCTTTCTCTCTACCTGTAATCCTCTTCCTCTAGGTCATCACACAGATCGTTTCTTCACTCTATT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TAGGTCTTTCAGAAGTAACACTAAGGGAGGCTTTTCCAGACAATATTATGCAAATATAAATGGACATGTGACAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATACTTTATTCGACTTATTAGTTACTGAGAGTGTATTTGAGTAGCCAGGTATTTATAGGCAATTTAACAATGTA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ATGTTAGTATAAGGTGGCAAGGTTAGATATAAACCTGTTAATGTCTCACAGGGTAATAAACTATAACTTTTGGT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GTTATCTGTTCCACTGGAAAGGAAGTAGGGATTTGCATTCTTACTGGACAAAAATCTACAAGTTAATGTATAGA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTCAGTATAGGACTTTTAAATCAATAGTGAACGATGAAATGAACAAAGTACAATCCCCTAGTCCTTGGTTTGAC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ACTGAAAGGACATGCCACTCACCTTTTTGCCTTGTTTCCAAAGTTTGGAATAATTTTCCTTTCAAAATGAAATT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATTTCTCATTCAGTTGTCCTATTGCAGGCAGCCTTTACTGCTTCCCCCAGTTAATGTACCTGTCAAGCTTACTC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ATGATTTCCTAACTGCCAAATTCAATGGATATTTTTAATTTTTTTTTTGCTATGACTCATACTGTTCCCTTCGG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GCTTGTCAGCAGATAAATGACCTTCTGGGGACTGTGCAAAATATGGAATGCTTAATGAATTTGTGTGTTATTCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGTGCAGGGGACACAACAGTCTTCTCTGTAGATTACAGTTTTAGTGTATGTGCTGTTGAAGTGAGCACTTCTGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GTAATTTTGATTGTTTTACTTTTTATGTAAAATTTCACATTGTTTAAAACACCAGATGGGGGCCAGGCATGGTG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GCTCATGCCTGCAATCCCAGCACTTTGGGAGGCTGAGGCGAGTGGATTGCTTGGGCTCAGGAGTTTGAGACCAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCTTGCCATGTGGCAAAACCTTGTCTCTATAAAAAATAGAAATATCAGCCAGGCATGGTGGTGTATGCCTGTAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TCCCAGCTACTTGGGAGGCTGAGGTGGGAGGCACTTGAGCCTGGGAGGTGGAGGTTGAAGTGAGCTGAGATCAC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GCCACTGCACTCCAGCCTGGGTGACAGAGCAAGACCATCTCAGAAAACAAACAAACAAAAAATACCACATGGCC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AAATGAAAGATGTCTGTGGTCTGAATTTGGGCCAAAAGCTGTAATCTTACAGTCTTTGATTATTTTTTAATACA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TGCTGAATTCCAAGAGGAGCTGACAAATCTCTTGAGATTTCACTTGGGTTCCATGGATTCCCAGCACAAAATGC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AAATGCAAATGAGATATGATTGGGATTCTCTGCACACTATCTCCACTTTCATAAGTGCCTCTGAAGTTTAGTTT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GAATTTTATAGTATCTCCTACCTTGCTGTACCTTAAAGGACTAACAGCAGCTACCTGACCCAGGATTAGCCAGT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CATATTTTTTCCAGAATTTGTAATTGGAACAATTGAGATGGTAGTCTTCTGCTGGTAGTTTGAAGAGAGGATAT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GTAAACTTGGTAGCTGTGTACTTAGAAGCAGAGAAAGCCTGTTTTCAGAGAGAAGAATGAAGCAGGTAAGTCAT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTGGAAGGACAAGCAGAAGCACAATTTTGGGAACAGTTGCTTTCAGAGTCCTGATGGCATTCCAGCCCCTTGTC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CTAGTGCCAGTTCAGGCCCAAGTGTTTGGCCTTTGGGACCTATGATACAGATATCCTATTTCCTTTTAATTAAT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TGCCTCTTAAAATTACTATTATTAAGCTAGCTTGCAAGGGTTTCTGTTACGTGGAATCAAGGAACCTCAGTAGA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GAGGAAAATGAAGCACTTTGTGGTGGTGCTGCACAGGGTATCATTTTGCAGGGTATATACTGTGTGTTTTCTAC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GTTGACTGGAGTCTGGGGTCAGGTGTAAGAAGTGTTACATAAACATTGGGTTCAAATGAGTCAGAATAAAGTCA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 ACTAAAAAAATAAAAAAGACATACATGGACTTCAGAACAAATGTTTATTACTGCTTAATGGGGCCAAAGGGGCA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 ACACAAAGCATTGAAAACATCACTGGCTCACAAAAACAGTCACCTTGTTACCTTCTCAGTTGCATTTGTTTATT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TCACAAGGCTTCATTCACACATAAAAACAAGATACTAATCCAATTCAAGTTCATAACGATTATAAAAGTAAACA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TTTGTTGGGACAATGTACAATAAATTGCACTTTTTAGACAAGCATTACATTTACATTTATAGAGTGTACTATAC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 ATAATACATGGAATTACGGAAACGTCTAATTGGTCATTGTTTATAGAGGAAGAGGCTGATCACTAACGTTTATT 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TTGTAGTTAATTAGTACTGTTCAGACTAATCAACTCCTTTATTCTAGAACCTGTTTTCATTAGAGATGCCATGG 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 ACAAAATAATGGAATTCATAAAAATAGACAATTCCAGAATCTCTACTACCTCCTCTGCAAGGGAAAGGTAGGAG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TTAGAAAGAAAGGAAGTGGGGCTGACTGAGAAACTTTGTCCCTCATTTGAACTAAGGATCCATGCATTATGCAA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 AATACCAAAAATAGAGAAACTGATACAAAAGGCTTTTGGGACATCTTGGATCTGGGACCATCTCCAGCCTTATT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 CTTGTGCTTTCATGACACCAGAGTCTTTCGATGCATTTATATTCTCACAATTCAGTCCATATATTTTATCCCAT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 ATATAATATATAGTTATTAAAAGTTATACAGTTTAATGGAAAAGATTTTACATGTTAACTAATTGCCAATGAAA 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 AAGGAAAATAACTTAAAATGTTCACTTTCTACTCAATGATTCTTTTTTCTTAAGCTTTTCAGAATACCACTAAT 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 GACAAACCAGAGATGGAGGTAGGAAGAATGGGATATATTAATGAAATGTTTTTATAGCAGGCAGCAAATTCAGG 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TGGAGATAAGCTTGACATATGTAGTCTTTTAGATGCAAACTGAGAAAGGAATGCCAGACAGCTGACTGCAGTCA 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 CTAAAATCTCCTATATGCCCACTTTTCTCATTACAACTCAAGATCAGCATCTCCTATTGAGGTGCAGCCAAGGT 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 TGAAGTCCTCATTTTGGTCACTTTTGAAAGATAAAGAATTTGCTAAGGTAAAGGGCTTTGCCTGTATTAAATGG 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 AAGCCATTATGAGAGAGGAAGAATGTGTTGGGACAGTTCTAGTTCAGTGTGACTATCAGCATGGCGACGAGAAA 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 GAGTTTTATATCTGGTTGTAGGAAACAGGCTGCAGAGCTGTGGTCTGGCCTTCTGGCTTTCATCATCATTTCTT 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 GAAATCTCAATGTGTATTTGGTTGTGTGGTACCCAGGTAAACAAAAGCAGCAGAGATACTCTATATAAAATTCT 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TCCAATTAAACACACATACAAACCTAATAGTGTTCAAATCATACAACAGAATTTCTTCACACTCATTTGTAATT 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 GGAGAAAAGGAGTCAGTATTTTGGAGTGTTTTTAAGGGCAAGTTATATAATATAATCATCTTGCTAATCAAGTA 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 AAAGTGTTCTTTCCCAGAAGATAAAACAAAACCAAGGCATTTAATTTTTTAAAAGTTTTTTCCCTTAAAGGGGC 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 CCCCCTAATCAGGCAGGTACCTAAGTGTTTGATGCAAAGGTTGGTGGGAGAGTTAGTAGACAGATTTTAGTGAA 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 AGTATGAAGACTTAAACCCCTACATCAGTTACACATGTGATTCTCCTGGGTGACTGGCTCACTCCTTTAAAGAT 4884
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4885 GTAACTCTATCTCCTCTGCCCAAATCTGTATTGTTTTCCGTTGGTTTTCTCACTTCAGCTAGGAAATAAAGCAA 4958
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4959 CTAGTTATTAACTGGAAAATATTTTAAGAAAATGGAGCAGGGGTTGGAGAAAAATAAATATTAATACATCATAG 5032
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5033 GAAAAAAATGAAACAAGATACATACTATTAAATATCCCCACATCCATACAAAGGTTGCTTTTCTACTTTACTCA 5106
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5107 GGACATTTCAGAAAGCCAATGAAGAAGTACTAATTTAACAGCTGGGAGAGGGGCAGAAGACACTGGTTGAATGG 5180
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5181 CATTCCTATTAGTGTTCCTGATAGGCACTCATAAATAAACAGAACATTAAGTAACAGAATTTCTTTGCATTAAA 5254
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5255 TTATATGTAACTAAATAAAACCAAATTTTGACATGGTTCAGGATGTGGGAAGCTAGCAAACATATGCACTGCAA 5328
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5329 AATCCAGCTTGGTTTCTTTCAGATTTAAAGACGTGTTTAGATTCTCAAGATACAAAAGCTGATGAACTGAATTA 5402
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5403 TGAAGTTGAATTTCATTCATTTAATTTTTTCCACAGAATTTAATGAAAATAGAAATGATCAATTCTTAGATACT 5476
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5477 GCAAATATTAGATTTTCAGAGGAATGTTTTGTACAGAGTGCATCCTAGCAAAGGATGAAAAACACTAGAATGTT 5550
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5551 TTGAAACTTTCCTGGATATTTGGCTGGTTAATCTCTTCTAAGTGAAATTCAAGAGAAGAGATGCAATTCTCAAA 5624
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5625 TATATCTCAAAATAACTAAAATTAAAACTAGGAGTTACTTCATGCTGGGATGCATGAGTTTTCCAACAATAGAC 5698
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5699 AGTGAAGGACATATTGTTTGGAATATTGCTATTATAACATATTGTATGAACAATCATATCACATACCAAATTCT 5772
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5773 GAATTTTCTTTGTTTCTAGTCTTTACTATTGCTACTGACTCAAAGGCATTGCAGTGAAGGAGAGTTTAGGCTTA 5846
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5847 TGGTACCAACAGGCATACCCAAGTATGATATGGGGCTGGAGAATAAAAAAAAAAAAAATATGTATTGCCCTCGT 5920
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5921 AATCTTTTGAAAGAGCTAAAAGAAAACTCAAAAGATGGACTTATCAAACTTGAGAGGTATGTACCTGGTGATTT 5994
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5995 TTCGAGACGGAATTTTGCTCTTGTCGCCCAGGCTGGATGGAATGTAATGCCGTAATCTTGGCCCACTGCAACCT 6068
Query 1 -------------------------------------------------------------------------- 0
Sbjct 6069 CTGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAACCTCCCGAGTAGCTGGGATTACAGGCACCCGCCACCAAG 6142
Query 1 ------------------------------ATGGGGTTTCTCCATGTCGGTCAGGCTGGTCTGGAACTCCTGAC 44
||.|||||||.||||||.||.|||||||||||..||||||||||
Sbjct 6143 CCCGGCTAATTTTTGTATTTTGCAGTAGAGATAGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGAC 6216
Query 45 CTCAGGTGATCCGCCCACCTCAGCCTCC---------------------------------------------- 72
||.|||||||||.|||||||||||||||
Sbjct 6217 CTTAGGTGATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGATGTGAGCCACCATGCCTGGCCAGGGG 6290
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6291 GGATTTTTCTCTTCTCCTCTTTAAAAGGAAAGGGACTATGAAGTTGAACAAGGTCTTTAGATAAGGGATTGACC 6364
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6365 TAGAGCCATTATGTTTCTCCCTCACCTACTATTATTTAAAGAAAATTACACACTTTAGGCATTCTGTGGAATGT 6438
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6439 ACTTATTTTTGTAAATTGAAACAAGCTCTGTACAGAACTATGAAATTCACAACACAAAAGAGCATCTTTAATTT 6512
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6513 AGCTGGCCATTTGATAAGGCAACTGCACAAGGCTTCTTGGAATCAAAGCGTAAAGTACCAGTAAAGCTAACAGC 6586
Query 73 -------------------------------------------------------------------------- 72
Sbjct 6587 CTATACTAAATGATTTACAAAAACAAGCGCCAAGATAACATTTTCTAGCTATTACATTTTACAAAAAAAAAAAA 6660
Query 73 ------------------------------------------------ 72
Sbjct 6661 AAAAAAATTAGCTTATCTAGACCACCATGTAGAGAATGTTAAAGCCAA 6708
