Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10303
- Subject:
- XR_001753189.1
- Aligned Length:
- 4712
- Identities:
- 167
- Gaps:
- 4520
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGTAAGCGGGAAGCGAGGGCGAGGGGTAGGGGCTGGGGAAGGGCGAGCGGGAGGCGCGGGCTCTCTCTAGCAGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGGCTGCAGCCATGAAGAGGCTCTTAGCTGCCGCTGGCAAGGGCGTGCGGGGCCCGGAGCCCCCGAACCCCTTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCGAACGGGTCTACACTGAGAAGGACTACGGGACCATCTACTTCGGGGATCTAGGGAAGATCCATACAGCTGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTCCCGGGGCCAAGTCCAGAAGCTGGAGAAGATGACAGTAGGGAAGAAGCCCGTCAACCTGAACAAAAGAGATA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGAAGAAGAGGACTGCTCTACACTGGGCCTGTGTCAATGGCCATGCAGAAGTAGTAACATTTCTGGTAGACAGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGTGCCAGCTTAATGTCCTTGATGGCGAAGGGAGGACACCTCTGATGAAGGCTCTACAATGCGAGAGGGAGGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TTGTGCAAATATTCTCATAGATGCTGGTGCTGATCTAAATTATGTAGATGTGTATGGCAACACGGCTCTCCATT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATGCCGTTTATAGTGAGAATTTGTTAATGGTGGCAACACTGCTGTCCTATGGTGCAGTCATCGAGGTGCAAAAC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AAGGCTAGCCTCACACCCCTTTTACTGGCCATACAGAAAAGAAGCAAGCAAACTGTGGAATTTTTACTAACAAA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAATGCAAATGCAAACGCATTTAATGAGTCTAAATGCACAGCCCTCATGCTTGCCATATGTGAAGGCTCATCAG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGATAGTCGGCATGCTTCTTCAGCAAAATGTTGACGTCTTTGCTGAAGACATACATGGAATAACTGCAGAACGT 814
Query 1 -ATGCAAATGCAAATGGAGTTGATAAGTTTAAATGCATTCATCAACAACTTTTGGAATATAAACAAAAGATATC 73
||||...|||...||||| ||||.|.||||||||||||||||||||||.|||.||.|||..||.|
Sbjct 815 TATGCTGCTGCTTGTGGAG---------TTAATTACATTCATCAACAACTTTTGGAACATATACGAAAATTACC 879
Query 74 TAAAAATTCTCAAAATAGTAATCCAGAAGGAACATCTGAAGGAACACCTGACGAGGCTGCACCCTTGGCGGAAA 147
|||||||.|||||||||..||||||||||||||||||..||||||||||||.||||||||||||||||||||||
Sbjct 880 TAAAAATCCTCAAAATACCAATCCAGAAGGAACATCTACAGGAACACCTGATGAGGCTGCACCCTTGGCGGAAA 953
Query 148 GAACACCTGACACGGCTGAAAGCTTGGTGGAAAGAACACCTGACGAATAGGATACAG----------------- 204
||||||||||||||||||||||||||.||||||.||||||||||| |||.|.||.
Sbjct 954 GAACACCTGACACGGCTGAAAGCTTGCTGGAAAAAACACCTGACG---AGGCTGCACGCTTGGTGGAGGGAACG 1024
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1025 TCTGCCAAAATTCAATGTCTGGGGAAAGCAACATCTGGAAAGTTTGAACAGTCAACAGAAGAAACACCTAGGAA 1098
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1099 AATTTTGAGGCCTACAAAAGAAACATCTGAGAAATTTTCATGGCCAGCAAAAGAAAGATCTAGGAAGATCACAT 1172
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1173 GGGAGGAAAAAGAAACATCTGTAAAGACTGAATGCGTGGCAGGAGTAACACCTAATAAAACTGAAGTTTTGGAA 1246
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1247 AAAGGAACATCTAATATGATTGCATGTCCTACAAAAGAAACATCTACAAAAGCAAGTACAAATGTGGATGTGAG 1320
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1321 TTCTGTAGAGCCTATATTCAGTCTTTTTGGCACACGGACTATTGAAAATTCACAGTGTACAAAAGTTGAGGAAG 1394
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1395 ACTTTAATCTTGCTACCAAGATTATCTCTAAGAGTGCTGCACAGAATTATACGTGTTTACCTGATGCTACATAT 1468
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1469 CAAAAAGATATCAAAACAATAAATCACAAAATAGAAGATCAGATGTTCCCATCAGAATCCAAACGAGAGGAAGA 1542
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1543 TGAAGAATATTCTTGGGATTCTGGGAGTCTCTTTGAGAGTTCTGCAAAGACTCAAGTGTGTATACCTGAGTCTA 1616
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1617 TGTATCAGAAAGTAATGGAGATAAATAGAGAAGTAGAAGAGCTTCCTGAGAAGCCATCTGCCTTCAAGCCTGCC 1690
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1691 GTTGAAATGCAAAAGACTGTTCCAAATAAAGCCTTTGAATTGAAGAATGAACAAACATTGAGAGCAGCTCAGAT 1764
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1765 GTTCCCATCAGAATCCAAACAAAAGGACGATGAAGAAAATTCTTGGGATTCTGAGAGTCCCTGTGAGACGGTTT 1838
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1839 CACAGAAGGATGTGTATTTACCCAAAGCTACACATCAAAAAGAATTCGATACCTTAAGTGGAAAATTAGAAGAG 1912
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1913 TCTCCTGTTAAAGATGGTCTTCTGAAGCCTACCTGTGGAAGGAAAGTTTCTCTTCCAAATAAAGCCTTAGAATT 1986
Query 205 -------------------------------------------------------------------------- 204
Sbjct 1987 AAAGGACAGAGAAACATTCAAAGCAGAGTCTCCTGATAAAGATGGTCTTCTGAAGCCTACCTGTGGAAGGAAAG 2060
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2061 TTTCTCTTCCAAATAAAGCCTTAGAATTAAAGGACAGAGAAACACTCAAAGCAGAGTCTCCTGATAATGATGGT 2134
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2135 CTTCTGAAGCCTACCTGTGGAAGGAAAGTTTCTCTTCCAAATAAAGCTTTAGAATTGAAGGACAGAGAAACATT 2208
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2209 CAAAGCAGCTCAGATGTTCCCATCAGAATCCAAACAAAAGGATGATGAAGAAAATTCTTGGGATTTTGAGAGTT 2282
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2283 TCCTTGAGACTCTCTTACAGAATGATGTGTGTTTACCCAAGGCTACACATCAAAAAGAATTCGATACCTTAAGT 2356
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2357 GGAAAATTAGAAGAGTCTCCTGATAAAGATGGTCTTCTGAAGCCTACCTGTGTAAGGAAAGTTTCTCTTCCAAA 2430
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2431 TAAAGCCTTAGAATTAAAGGACAGAGAAACATTAAAAGCAGCTCAGATGTTCCCATCAGAATCCAAACAAAAGG 2504
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2505 ATGATGAAGAAAATTCTTGGGATTTTGAGAGTTTCCTTGAGGCTCTCTTACAGAATGATGGGTGTTTACCCAAG 2578
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2579 GCTACACATCAAAAAGAATTCGATACCTTAAGTGGAAAATTAGAAGAGTCTCCTGATAAAGATGGTCTTCTGAA 2652
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2653 GCCTACCTGTGGAATGAAAATTTCTCTTCCAAATAAAGCCTTAGAATTGAAGGACAGAGAAACATTCAAAGCAG 2726
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2727 AGGATGTGAGTTCTGTAGAGTCCACATTCAGTCTTTTTGGCAAACCGACTACTGAAAATTCACAGTCTACAAAA 2800
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2801 GTTGAGGAAGACTTTAATCTTACTACCAAGGAGGGAGCAACAAAGACAGTAACTGGACAACAGGAACGTGATAT 2874
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2875 TGGCATTATTGAACGAGCTCCACAAGATCAAACAAATAAGATGCCCACATCAGAATTAGGAAGAAAAGAAGATA 2948
Query 205 -------------------------------------------------------------------------- 204
Sbjct 2949 CAAAATCAACTTCAGATTCTGAGATTATCTCTGTGAGTGATACACAGAATTATGAGTGTTTACCTGAGGCTACA 3022
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3023 TATCAAAAAGAAATAAAGACAACAAATGGCAAAATAGAAGAGTCTCCTGAAAAGCCTTCTCACTTTGAGCCTGC 3096
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3097 CACTGAAATGCAAAACTCTGTTCCAAATAAAGGCTTAGAATGGAAGAATAAACAAACATTGAGAGCAGATTCAA 3170
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3171 CTACCCTATCAAAAATCTTGGATGCACTTCCTTCTTGTGAAAGAGGAAGGGAACTTAAAAAAGATAACTGTGAA 3244
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3245 CAAATTACAGCAAAAATGGAACAAACGAAAAATAAGTTTTGTGTACTACAAAAGGAACTGTCAGAAGCGAAAGA 3318
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3319 AATAAAATCACAGTTAGAGAACCAAAAAGCTAAATGGGAACAAGAGCTCTGCAGTGTGAGATTGACTTTAAATC 3392
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3393 AAGAAGAAGAGAAGAGAAGAAATGTCGATATATTAAAAGAAAAAATTAGACCCGAAGAGCAACTTAGGAAAAAG 3466
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3467 TTAGAAGTGAAACAACAACTTGAACAGACTCTCAGAATACAAGATATAGAATTGAAAAGTGTAACAAGTAATTT 3540
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3541 GAATCAGGTTTCTCACACTCATGAAAGTGAAAATGATCTCTTTCATGAAAATTGCATGTTGAAAAAGGAAATTG 3614
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3615 CCATGCTAAAACTGGAAGTAGCCACACTGAAACATCAACACCAGGTGAAGGAAAATAAATACTTTGAGGACATT 3688
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3689 AAGATTTTACAAGAAAAGAATGCTGAACTTCAAATGACCCTAAAACTGAAACAGAAAACAGTAACAAAAAGGGC 3762
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3763 ATCTCAGTATAGAGAGCAGCTTAAAGTTCTGACGGCAGAGAACACGATGCTGACTTCTAAATTGAAGGAAAAAC 3836
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3837 AAGACAAAGAAATACTGGAGACAGAAATTGAATCACACCATCCTAGACTGGCTTCTGCTTTACAAGACCATGAT 3910
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3911 CAAAGTGTCACATCAAGAAAAAACCAAGAACTTGCTTTCCACAGTGCAGGAGATGCTCCTTTGCAAGGAATAAT 3984
Query 205 -------------------------------------------------------------------------- 204
Sbjct 3985 GAATGTTGATGTGAGTAATACAATATATAACAATGAGGTGCTCCATCAACCACTTTATGAAGCTCAAAGGAAAT 4058
Query 205 -------------------------------------------------------------------------- 204
Sbjct 4059 CCAAAAGCCCAAAAATTAATCTCAATTATGCAGGAGATGATCTAAGAGAAAATGCATTGGTTTCAGAACATGCA 4132
Query 205 -------------------------------------------------------------------------- 204
Sbjct 4133 CAAAGAGACCGATGTGAAACACAGTGTCAAATGAAGAAAGCTGAACACATGTATCAAAATGAACAAGATAATGT 4206
Query 205 -------------------------------------------------------------------------- 204
Sbjct 4207 GGACAAACACACTGAACAGCAGGAGTCTCTGGAGCAGAAATTATTTCAACTAGAAAGCAAAAATAGGTGGCTTC 4280
Query 205 -------------------------------------------------------------------------- 204
Sbjct 4281 GACAGCAATTAGTTTATGCACATAAGAAAGTTAACAAAAGCAAGGTAACAATTAATATTCAGTTTCCTGAGATG 4354
Query 205 -------------------------------------------------------------------------- 204
Sbjct 4355 AAAATGCAACGTCATCTAAACGAGAAAAATGAGGAGGTATTCAATTATGGTAACCATTTAAAAGAACGTATAGA 4428
Query 205 -------------------------------------------------------------------------- 204
Sbjct 4429 TCAATATGAAAAAGAGAAAGCAGAAAGAGAAGTCATTGTGAGACAACTTCAAAAAAAATTGGCGGATCTTAATA 4502
Query 205 -------------------------------------------------------------------------- 204
Sbjct 4503 AACAGTGTGAGGCTTCACTAAAGGTTACATCACATTCTCACTCTCTGAGGCATCAATAGAGGCTACATCACATT 4576
Query 205 -------------------------------------------------------------------------- 204
Sbjct 4577 ATCACATTAATCTCAAAGATTAAACAGTAAAGTTTATTGTGAACATTTGCTTCTTTTTCCATTTTAAAGTTAAA 4650
Query 205 -------------------------------------------------- 204
Sbjct 4651 CAAGAAGAAAAGCTGTTGGGTACACCTGCAGAAAGGCTGTCACTTCACAC 4700
