Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10398
Subject:
NR_135317.1
Aligned Length:
2594
Identities:
294
Gaps:
2285

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCGGGCGGCGAGCGGCGCGCACAATCCTCGCTCGGCTGCGGCTCTCGGGTGTCCCAGGCCCGGCCGGTAAGCAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGCATGGCGGGTGCGGGCCCGAAGCGGCGGGCGCTAGCGGCCCCGGTGGCCGAGGAGAAGGAAGAGGCGCGGGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GAAGATGCTGGCCTCCAAGCGCGCGGACGGCGCGGCGCCGGCAGGCGAGGGCGAGGGCGTGACCCTGCAGCGGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ACATCACGCTACTCAACGGCGTGGCCATCATCGTGGGCGCCATCATCGGCTCGGGCATCTTCGTGACGCCCACG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGCGTGCTTAAGGAGGCAGGCTCGCCGGGGCTGGCGCTGGTGATGTGGGCCGCGTGCGGCGTCTTCTCCATCGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGGCGCGCTCTGCTACGCGGAGCTGGGCACCACCATCTCCAAATCGGGCGGCGACTACGCCTACATGCTGGACG  444

Query    1  -----------------------------------AT-GAGC---------------------CGCAG------  11
                                               || ||||                     |||||      
Sbjct  445  TCTACGGCTCGCTGCCCGCCTTCCTCAAGCTCTGGATCGAGCTGCTCGTCATCCGGCCTTCATCGCAGTACATC  518

Query   12  --AGCCCCGGGGTCT-----------CGGCTGAGCAGCGG--CGGCACCAACTATTCGCGGAGC---TGGAATG  67
              .||||  .|||||           |.|||.|  |||.|  |..|.|||.|  |.|.|||.||   .|||   
Sbjct  519  GTGGCCC--TGGTCTTCGCCACCTACCTGCTCA--AGCCGCTCTTCCCCAGC--TGCCCGGTGCCCGAGGA---  583

Query   68  ACTGGCAACCCAG----------------------AACTGATAGTGCATCAGCTGACCCAGGTAATTTAAAATA  119
               ||||.||.||                      |||||||||||||||||||||||||||||||||||||||
Sbjct  584  ---GGCAGCCAAGCTCATGGCCTGCCACTGCGTGCAACTGATAGTGCATCAGCTGACCCAGGTAATTTAAAATA  654

Query  120  TTCTTCATCCAGAGATAGAGGTGGTTCTTCCTCTTACGGACTGCAACCTTCAAATTCAGCTGTGGTGTCTCGGC  193
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  655  TTCTTCATCCAGAGATAGAGGTGGTTCTTCCTCTTACGGACTGCAACCTTCAAATTCAGCTGTGGTGTCTCGGC  728

Query  194  AAAGGCACGATGATACCAGAGTCCACGCTGACATACAGAATGACGAAAAGGGTGGCTACAGTGTCAATGGAGGA  267
            ||||||||||||||||||||||||||||||||||||||||||||||||                          
Sbjct  729  AAAGGCACGATGATACCAGAGTCCACGCTGACATACAGAATGACGAAA--------------------------  776

Query  268  TCTGGGGAAAATACTTATGGTCGGAAGTCGTTGGGGCAAGAGCTGAGGGTTAACAATGTGACCAGCCCTGAGTT  341
                                                                                      
Sbjct  777  --------------------------------------------------------------------------  776

Query  342  CACCAGTGTTCAGCATGGCAGTCGTGCTTTAGCCACCAAAGACATGAGGAAATCACAGGAGAGATCGATGTCTT  415
                                                                    ||||||||||||||||||
Sbjct  777  --------------------------------------------------------AGGAGAGATCGATGTCTT  794

Query  416  ATTGTGATGAGTCTCGACTGTCAAATCTTCTTCGGAGGATCACCCGGGAAGACGACAGAGAC------------  477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct  795  ATTGTGATGAGTCTCGACTGTCAAATCTTCTTCGGAGGATCACCCGGGAAGACGACAGAGACTGAAGATTGGTC  868

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct  869  ACTGTAAAGCAGTTGAAAGAATTTATTCAGCAACCAGAAAATAAGCTGGTACTAGTTAAACAATTGGATAATAT  942

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct  943  CTTGGCTGCTGCACATGATGTGCTTAATGAAAGTAGCAAATTGCTTCAGGAGTTGAGACAGGAGGGAGCTTGCT  1016

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct 1017  GTCTTGGCCTTCTTTGTGCTTCTCTGAGCTATGAGGCTGAGAAGATCTTCAAGTGGATTTTTAGCAAATTTAGC  1090

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct 1091  TCATCTGCAAAAGATGAAGTTAAACTCCTCTACTTATGTGCCACCTACAAAGCACTAGAGACTGTAGGAGAAAA  1164

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct 1165  GAAAGCCTTTTCATCTGTAATGCAGCTTGTAATGACCAGCCTGCAGTCAATTCTTGAAAATGTGGATACACCAG  1238

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct 1239  AATTGCTTTGCAAATGTGTTAAGTGCATTCTTTTGGTGGCTCGATGTTACCCTCATATTTTCAGCGCTAATTTT  1312

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct 1313  AGGGATACAGTTGATATATTAGTTGGATGGCATAGAGATCATACTCAGAAACCTTCGCTCACGCAGCAGGTATC  1386

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct 1387  TGGGTGGTTGCAGAGTTTGGAGCCATTTTGGGTAGCTGATCTTGCATTTCCTACGACTCTTCTTGGTCAGTTTC  1460

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct 1461  TAGAAGACATGGAAGCATATGCTGAGGACCTCAGCCATGTGGCCTCTGGGGAATCAGTGGATGAAGACGTCCCT  1534

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct 1535  CCTCCATCAGTGTCATCACCAAAGCTGGCTGCGCTTCTCCGGGTATTTAGTACTGTGCTGAGGAGCATTGGGGA  1608

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct 1609  ACGCTTCAGCCCAATTCGGGTCCTCCAATTACTGAGGCATACGTAACAGTTGTTCTGTACAGAGTAATGAGATG  1682

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct 1683  TGTGACGGCTGCAAACCAGGTGTTTTTTTCTGAGGCTGTGTTGACAGCTGCTAATGAGTGTGTTGGTGTTTTGC  1756

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct 1757  TCGGCAGCTTGGATCCTAGCATGACTATACATTGTGACATGGTCATTACATATGGATTAGACCAACTGGAGAAT  1830

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct 1831  TGCCAGACTTGTGGTACCAATTATATCATCTCAGTCTTGAATTTACTCACGCTGATTGTTGAACAGATAAATAC  1904

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct 1905  GAAACTGCCATCATCATTTGTAGAAAAACTGTTTATACCATCATCTAAACTACTATTCTTGCGTTATCATAAAG  1978

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct 1979  AAAAAGAGGTTGTTGCTGTAGCCCATGCTGTTTATCAAGCAATGCTCAGCTTGAAGAATATTCCTGTTTTGGAG  2052

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct 2053  ACTGCCTATAAGTTAATATTGGGAGAAATGACTTGTGCCCTAAACAACCTCCTGCACAGTCTGCAACTTCCTGA  2126

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct 2127  GGCCTGTTCTGAAATAAAACATGAGGCTTTTAAGAATCATGTGTTCAATGTAGACAATGCAAAATTTGTAGTTA  2200

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct 2201  AATTTGACCTCAGTGCCCTGACTACAACTGGAAATGCCAAAAACTCGAGTCTTTAATTGTAATGACTTTGTTTT  2274

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct 2275  ATCCACAGTTAAGCCTTTTCTCATTACATATTTATGTATTTCACTGTCATGTCAACATGTCTGCAGAATCACTG  2348

Query  478  --------------------------------------------------------------------------  477
                                                                                      
Sbjct 2349  TATGTAACAAACAGCCATATTTAAGACATGCCTGGATAAATAAAATTGGTAGGAATGTTTTCTTGCCATTATAT  2422

Query  478  ----  477
                
Sbjct 2423  TTAA  2426

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