Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10499
- Subject:
- NR_023917.1
- Aligned Length:
- 3932
- Identities:
- 1106
- Gaps:
- 2825
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGATGAGAGACAGAGACGGCGGCGGCGGCGGCGGCCCGGCCCGGCCCGGCCTGAAGCCCCTCTCAGCAACCCGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAGCATCCGCGGGGGCGGCGCCGGCAGCGGCGGCGTTTCTCGCTTCTTCTTCGTCTTTTCTAACTGTGCAGCCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTTCCTCGGCTTCTCCTGAAAGGGAAGGTGGAAGCCGTGGGCTTGGGCGGGAGCCGGCTGAGGCGCGGCGGCGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGGCACCTCCCCCTCCTGGAGCGGGGGGAGAAGCGGCGGCGGCGGCGCCCCCGGTGGCCCCGGCGGCTGCAGCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCAGGGAGGGGGTCTGAGTCGCCTGTCACCATTTCCAGGGCTGGGAACGCCGGAGAGTTGGTCTCTCCCCTTCT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACTGCCTCCAACACGGCGGCGGCGGCGGCGGCGGCGGCGGCACATGGAGGGACCCGGGCCGGTTTTAAACCTCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CGTCCGCCGCCGCCGCACCCCCCGTGGCCCGGGCTCCGGAGGCCGCTGGAGGAGGCAGCCGTTCGGAGGATTAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCGTCTTCTCCCCATTCCGCTGCCGCCGCTGCCAGGCCTCTGGCTGCTGAGGAGAAGCAGGCCCAGTAGCTGCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ACCATCCAGCAGCTGCTGCCGCAGCCATTACCCGGCTGCGGTCCAGAGCCAAGCAGCGGCTGAGCGAGGGGCAT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CAGCTACCGCCAAGTCCAGAGCCATTTCCATCCTGCAGAGCCCCGCCACCAGCAGCTTCTGCCATCTCTCTCCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCTTTTTCTTCAGCCACAGGCTCCCAGACAGGACAGCCATCATCAAAGAGATCGTTAGCAGAAACAAAAGGAGA 814
Query 1 ---------------------------------------------------------ATGGGATTTCCTGCAGA 17
|||||||||||||||||
Sbjct 815 TATCAAGAGGATGGATTCGACTTAGACTTGACCTATATTTATCTAAACATTATTGCTATGGGATTTCCTGCAGA 888
Query 18 AAGACTTGAAGGCGTATACAGGAACAATATTGATGATGTAGTAAGGTTTTTGGATTCAAAGCATAAAAACCATT 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AAGACTTGAAGGCGTATACAGGAACAATATTGATGATGTAGTAAGGTTTTTGGATTCAAAGCATAAAAACCATT 962
Query 92 ACAAGATACACAATCTTTGTGCTGAAAGACATTATGACACCGCCAAATCTAATTACAGAGTTGCGCAATATCCT 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ACAAGATACACAATCTTTGTGCTGAAAGACATTATGACACCGCCAAATCTAATTACAGAGTTGCGCAATATCCT 1036
Query 166 TTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTTTGTGAAGATCTTGACCAATGGCTAAGTGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TTTGAAGACCATAACCCACCACAGCTAGAACTTATCAAACCCTTTTGTGAAGATCTTGACCAATGGCTAAGTGA 1110
Query 240 AGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGAACTGGTATAATGATTTATGCATATT 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGAACTGGTATAATGATTTATGCATATT 1184
Query 314 TATTACATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTCTATGGGGAAGTAAGGACCAGAGACAAA 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TATTACATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTCTATGGGGAAGTAAGGACCAGAGACAAA 1258
Query 388 AAGGGAGTAACTATTCCCAGTCAGAGGCGCTATGTGTATTACTATAGCTACCTGGTAAAGAATCATGTGGATTA 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AAGGGAGTAACTATTCCCAGTCAGAGGCGCTATGTGTATTACTATAGCTACCTGGTAAAGAATCATGTGGATTA 1332
Query 462 TAGACCAGTGGCACTGTTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCAATC 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TAGACCAGTGGCACTGTTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCAATC 1406
Query 536 CTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATGTATTCCTCCAATTCAGGACCCACACGATGGGAGGACAAG 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CTCAGTTTGTGGTCTGCCAGCTAAAGGTGAAGATGTATTCCTCCAATTCAGGACCCACACGATGGGAGGACAAG 1480
Query 610 TTCATGTATTTTGAGTTCCCTCAGCCGTTACCTGTGTGTGGTGGTATCAAAGTAGAGTTCTTCCACAAACAGAA 683
|||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1481 TTCATGTATTTTGAGTTCCCTCAGCCGTTACCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAA 1554
Query 684 CAAGATGCTAAAAAAGGACAAAATGTTTCACTTTTGGGTAAATACATTCTTCATACCAGGACCAGAGGAAACCT 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CAAGATGCTAAAAAAGGACAAAATGTTTCACTTTTGGGTAAATACATTCTTCATACCAGGACCAGAGGAAACCT 1628
Query 758 CAGAAAAAGTAGAAAATGGAAGTCTATGTGATCAAGAAATTGATAGCATTTGCAGTATAGAGCGTGCAGATAAT 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CAGAAAAAGTAGAAAATGGAAGTCTATGTGATCAAGAAATTGATAGCATTTGCAGTATAGAGCGTGCAGATAAT 1702
Query 832 GACAAGGAGTATCTAGTACTTACTTTAACAAAAAATGATCTTGACAAAGCAAATAAAGACAAAGCCAACCGATA 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GACAAGGAGTATCTAGTACTTACTTTAACAAAAAATGATCTTGACAAAGCAAATAAAGACAAAGCCAACCGATA 1776
Query 906 CTTTTCTCCAAATTTTAAGGTGAAGCTGTACTTCACAAAAACAGTAGAGGAGCCGTCAAATCCAGAGGCTAGCA 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CTTTTCTCCAAATTTTAAGGTGAAGCTGTACTTCACAAAAACAGTAGAGGAGCCGTCAAATCCAGAGGCTAGCA 1850
Query 980 GTTCAACTTCTGTAACACCAGATGTTAGTGACAATGAACCTGATCATTATAGATATTCTGACACCACTGACTCT 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GTTCAACTTCTGTAACACCAGATGTTAGTGACAATGAACCTGATCATTATAGATATTCTGACACCACTGACTCT 1924
Query 1054 GATCCAGAGAATGAACCTTTTGATGAAGATCAGCATACACAAATTACAAAAGTC-------------------- 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 GATCCAGAGAATGAACCTTTTGATGAAGATCAGCATACACAAATTACAAAAGTCTGAATTTTTTTTTATCAAGA 1998
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 1999 GGGATAAAACACCATGAAAACAAACTTGAATAAACTGAAAAGGGACCTTTTTTTTTAATGGCAATAGGACATTG 2072
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2073 TGTCAGATTACCAGTTATAGAAACAATTCTCTTTTCGTGACCAATCTTGTTTTACCCTATACATCCACAGGGTT 2146
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2147 TTGACACTTGTTGTCCAGTTGAAAAAAGGTTGTGTAGCTGTGTCATGTATATACCTTTTTGTGTCAAAAGGACA 2220
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2221 TTTAAAATTCAATTAGGATTAATAAAGATGGCACTTTCCCATTTTATTCCAGTTTTATAAAAAGTGGAGACAGA 2294
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2295 CTGGTGTGTATACGTAGGAATTTTTTCCTTTTGTGTTCTGTCACCAACTGAAGTGGCTAAAGAGCTTTGTGATA 2368
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2369 TACTGGTTCACATCATACCCCTTTGCACTTGTGGCAACAGATAAGTTTGCAGTTAGCTAAGAGAAGTTTCTGAA 2442
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2443 GGGTTTTGCTGCATTCTTGCATGTATTTGGGTTAGGGGAATGGAGGGAATGCTCAGAAAGGAAATAATTTTATG 2516
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2517 CTGGACTCTGGACCATATACCATCTCCAGCTATTTACACACACCTTTCTTTAGCATGCTACAGTTATTAATCTG 2590
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2591 GACATTCGAGGAATTGGCTGCTGTCACTGCTTGTTGTTTTCGCATTTTTTTAAAAGCATATTGGTGCTAGAAAA 2664
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2665 GGCAGCTAAAGGAAGTGAATCTGTATTGGGGTACAGGAATGAACCTTCTGCAACATCTTAAGATCCACAAATGA 2738
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2739 AGGGATATAAAAATAATGTCATAGATAAGAAACACAGCAACAATGACTTAACCATATAAATGTGGAGGCTATCA 2812
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2813 ACAAAGAATGGGCTTGAAACATTATAAAAATTGACAATGATTTGTTAAATATGTTTTCTTAATTGTAACGACTT 2886
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2887 CTCCATCTCCTGTGTAATCAAGGCCAGTGCTGAAAGTCAGATGCTATTAGTACCTACATCAGTCAACAACTTAC 2960
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 2961 ACTTATTTTACTAGTTTTCAATCATATACCTGCTGTGAATGCTTCATGTGCTGCCTGCAAGCTTCTTTTTTCTC 3034
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 3035 ATTAAATATAAAATATTTTGTAATGCTAAAAAAAAAAAAAAGAACATAGAAGACAAACATCAGAAATAAACCCA 3108
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 3109 TCCACTATGGTTAACTCATTTTTGAATATGGTGTAAAGTCAGTTTAATGATGAAATAATATTATTTTCAACAAA 3182
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 3183 TAGTACAGAAATTAAACTATGCAAAAATACTATTAATAATGATGTTGGATCATTACCTCACACCATACCCCCAA 3256
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 3257 ATTAACTCAGAACATGGCATACACCAAATATAAGAGCAAAAACTATGAAATTTCTAGAAGAAGACAGAAAAAAA 3330
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 3331 ATTATGACTTTGGCTTAGTTGTTTCTTAGAAGTAACAGGAAAAGCATAATTCATAAAAGATAAATTGAAAAATC 3404
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 3405 GGACGTCATCAAAATAAAAAATGGTTTATCTTCAAAGTCACCTGTTAAGAAAATGAGAAGACAAATCATAAAGC 3478
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 3479 AGGGAGAAATTTTTGAAAGTCATGTATCTGATAAGGGACAGTTAAAACTAAATAAAAACACAAACCATCCAATT 3552
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 3553 AAAATGAATAAAGGGTTCGAATAGGTATGTCATCAGAGATCATATAGGAATAACCAATAAGCAAACAAAAGATG 3626
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 3627 TTCAATATCATTAGTTATTAGAGAAACAAAATTTAAAAACCACAATGAGATGACACTACACATTTGCCAGAATG 3700
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 3701 ATGATTATTAAAAAAGACCAAGTATTGGAGAGGATGTGAAAAAACTGGAACCTCACACATTGACGATAGAAATG 3774
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 3775 TAAAATGAAATAGCCAATTCAGAAAACATTTTACAAGTTTTCTTTGTTTTTGTTTTTAATTTATTATACCCTTA 3848
Query 1108 -------------------------------------------------------------------------- 1107
Sbjct 3849 CCCTATGACTCAGTAATTCCACTTCTAGATACCTACCAAATAAAATTAAAGTTTATAACTTCACAAAGAAAAAA 3922
Query 1108 ---------- 1107
Sbjct 3923 AAAAAAAAAA 3932
