Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10609
- Subject:
- NM_001143989.2
- Aligned Length:
- 1974
- Identities:
- 852
- Gaps:
- 1104
Alignment
Query 1 ATGTGTTTGGGTTTCTTCTCCCCAGTCCCTGGCTCTACCTCTTCTGCCACAAACGTCAGCATGGTGGTATCTGC 74
||||||||||||||
Sbjct 1 ------------------------------------------------------------ATGGTGGTATCTGC 14
Query 75 CGACCCTTTGTCCAGCGAGAGGGCAGAGATGAACATCCTAGAAATCAACCAGGAATTGCGCTCCCAGCTGGCAG 148
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct 15 CGACCCTTTGTCCAGCGAGAGGGCAGAGATGAACATCCTAGAAATCAACCAGGAATTGCGCTCGCAGCTGGCAG 88
Query 149 AGAGCAATCAGCAGTTCCGAGACCTCAAAGAGAAATTCCTTATATCTCAAGCTACTGCCTACTCCCTGGCCAAC 222
||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||
Sbjct 89 AGAGCAATCAGCAGTTCCGAGACCTCAAAGAGAAATTCCTTATAACTCAAGCTACTGCCTACTCCCTGGCCAAC 162
Query 223 CAGCTGAAGAAATACA---------------------------------------------------------- 238
||||||||||||||||
Sbjct 163 CAGCTGAAGAAATACAAGTGTGAAGAGTACAAAGACATCATAGACTCTGTGCTGAGGGATGAACTGCAGTCCAT 236
Query 239 -------------------------------------------------------------------------- 238
Sbjct 237 GGAGAAGCTGGCAGAGAAGCTCAGGCAAGCTGAGGAGCTCAGGCAGTATAAAGCCCTGGTTCACTCTCAGGCAA 310
Query 239 -------------------------------------------------------------------------- 238
Sbjct 311 AAGAGCTGACCCAGTTACGGGAGAAGTTACGGGAAGGGAGAGATGCCTCCCGCTGGCTGAACAAGCATCTGAAA 384
Query 239 -------------------------------------------------------------------------- 238
Sbjct 385 ACCCTCCTCACTCCTGATGACCCTGACAAGTCCCAGGGTCAGGACCTCCGAGAGCAGCTGGCTGAGGGGCACAG 458
Query 239 -------------------------------------------------------------------------- 238
Sbjct 459 GCTGGCAGAGCACCTTGTTCACAAGCTGAGCCCAGAAAATGATGAAGATGAAGATGAGGATGAAGACGACAAAG 532
Query 239 -------------------------------------------------------------------------- 238
Sbjct 533 ACGAGGAGGTTGAGAAAGTACAGGAATCACCTGCCCCCAGAGAGGTGCAGAAGACTGAAGAAAAGGAAGTCCCT 606
Query 239 -------------------------------------------------------------------------- 238
Sbjct 607 CAGGACTCACTGGAGGAATGTGCTGTCACTTGTTCAAATAGTCACAACCCTTCTAACTCCAACCAGCCTCACAG 680
Query 239 -------------------------------------------------------------------------- 238
Sbjct 681 GAGCACCAAAATCACATTTAAGGAACACGAAGTCGACTCTGCTCTGGTTGTAGAGAGTGAACACCCTCATGATG 754
Query 239 -------------------------------------------------------------------------- 238
Sbjct 755 AAGAGGAGGAAGCTCTAAACATTCCCCCAGAAAATCAAAATGACCATGAGGAGGAGGAGGGGAAAGCGCCAGTG 828
Query 239 -------------------------------------------------------------------------- 238
Sbjct 829 CCCCCCAGACACCATGACAAGTCCAACTCTTACCGGCATCGTGAAGTCTCTTTCTTGGCATTGGATGAACAGAA 902
Query 239 -------------------------------------------------------------------------- 238
Sbjct 903 AGTTTGCTCCGCTCAGGATGTTGCCAGGGATTACTCCAATCCCAAATGGGATGAAACCTCACTTGGCTTCCTCG 976
Query 239 AAAAGCAAAATGATCTTGAAGAGGTGAAAGGACAAGAAACAGTTGCTCCCAGGCTCAGCAGGGGACCACTGAGA 312
|||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 977 AAAAGCAAAGTGATCTTGAAGAGGTGAAAGGACAAGAAACAGTTGCTCCCAGGCTCAGCAGGGGACCGCTGAGA 1050
Query 313 GTAGACAAGTATGAAATCCCCCAGGAGTCACTGGATGGATGTTGCTTGACTCCTTCCATCCTTCCTGACCTGAC 386
||.||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 GTGGACAAGCATGAAATCCCCCAGGAGTCACTGGATGGATGTTGCTTGACTCCTTCCATCCTTCCTGACCTGAC 1124
Query 387 TCCCTCCTACCACCCTTATTGGAGCACTTTGTACTCTTTTGAAGACAAGCAAGTCAGCTTGGCTCTTGTAGACA 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TCCCTCCTACCACCCTTATTGGAGCACTTTGTACTCTTTTGAAGACAAGCAAGTCAGCTTGGCTCTTGTAGACA 1198
Query 461 AAATTAAAAAGGATCAAGAGGAGGTAGAAGACCAAAGCCCACCATGCCCCAGGCTCAGCCAGGAGCGGCCAGAG 534
|||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 1199 AAATTAAAAAGGATCAAGAGGAGATAGAAGACCAAAGCCCACCATGCCCCAGGCTCAGCCAGGAGCTGCCAGAG 1272
Query 535 GTGAAGGAGCAGGAAGTCCCAGAGGACTCCGTGAATGAAGTTTACTTGACTCCCTCAGTTCACCATGATGTGTC 608
|||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1273 GTGAAGGAGCAGGAAGTCCCAGAGGACTCTGTGAATGAAGTTTACTTGACTCCCTCAGTTCACCATGACGTGTC 1346
Query 609 TGACTGCCACCAGCCTTATAGCAGCACCTTGTCCTCATTGGAGGATCAGCTTGCCTGCTCTGCTCTGGATGTAG 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 TGACTGCCACCAGCCTTATAGCAGCACCTTGTCCTCATTGGAGGATCAGCTTGCCTGCTCTGCTCTGGATGTAG 1420
Query 683 CCTCCCCCACCGAGGCGGCCTGTCCCCAAGGGACTTGGAGTGGAGACTTGAGCCACCACCGGTCAGAGGTTCAA 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||.|||
Sbjct 1421 CCTCCCCCACCGAGGCGGCCTGTCCCCAAGGGACTTGGAGTGGAGACTTGAGCCACCACCAGTCAGAGGTGCAA 1494
Query 757 ATTTCACAGGCACAGCTGGAACCAAGCACCCTGGTGCCCAATTGTCTGCGACTACAGCTGGATCAAGGGTTCCA 830
.|||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1495 GTTTCACAGGCACAGCTGGAACCAAGCACCCTGGTGCCCAGTTGTCTGCGACTACAGCTGGATCAAGGGTTCCA 1568
Query 831 CTGTGGGAACGGCTTGCCCCAGCGGGGCCTTTCCTCCATGACCCGCAGCTTCTCAGCCAATGCTGAT------- 897
||||||||||||||||.|||||||||||||||||||||..|||.|||||||||||||||||||||||
Sbjct 1569 CTGTGGGAACGGCTTGGCCCAGCGGGGCCTTTCCTCCACCACCTGCAGCTTCTCAGCCAATGCTGATTCTGGGA 1642
Query 898 -------------------------------------TCTGGGGATGAAGAACCCTCCCCAGCTGGAAGA---- 930
|||||||||||||||||||||||||||||||||
Sbjct 1643 ACCAATGGCCCTTCCAAGAGCTGGTTTTAGAGCCCTCTCTGGGGATGAAGAACCCTCCCCAGCTGGAAGATGAT 1716
Query 931 -------------------------------------------------------------------------- 930
Sbjct 1717 GCACTTGAAGGCTCAGCAAGCAACACACAAGGGCGTCAAGTCACTGGCCGGATTCGTGCCTCCCTTGTCCTGAT 1790
Query 931 -------------------------------------------------------------------------- 930
Sbjct 1791 ACTGAAGACCATCAGAAGAAGACTCCCGTTCAGCAAGTGGAGACTGGCATTCAGATTCGCTGGCCCGCATGCTG 1864
Query 931 -------------------------------------------------- 930
Sbjct 1865 AGAGCGCAGAGATACCAAATACTGCTGGAAGGACGCAAAGGATGGCAGGA 1914
