Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10630
- Subject:
- NM_001146261.2
- Aligned Length:
- 1863
- Identities:
- 515
- Gaps:
- 1305
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCGAGCGCATCATGGCGATTGAAGGTGGAGAGAGAACCTGTGGAGTACATGAACTTATCTGTATTAGAAAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GATAGGGTATTTCTCTGTGGCCAGGCTGGAGTACAGTGGCACCATCTTGGCTCACTGCAACTTCCGCCTCCTGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTTCAAACGATTCTTCTGCCTCAGCATCCCAAGTAACTGGGACTACAGTATCTCCAGAGGCAGTTGGATTTTTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCAGCTGTTGGGGTGTTTATTATCTTGATGCTGCTCCTTTTTCTCTATATTAATAAGAAGTTCTGTTTTGAAAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGTTGGCGGGTTTCCAGATCTTGGTTCAGAATACAGTACAAGGAAGAATTCACAAGATAAAATTTATAATTCCT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACATGGACAAAGATGAGCATGGTTCATCCTCTGAAAGTGAAGATGAAGCGCTGGGTAAATATCATGAGGCCTTA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCCAGAACACACAATTCCAGACTACCACTGGCAGATTCTAGACAAAGGAACTATGCTTGGGAAACAAGGCAGAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATACAGTCCTCTATCGGCAGAGTATGATGGATACAGTAGTGAAGCATCAATAGATGAAGGAAACTGCATTCAGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAATGAGAAGAACACCCCCGCTGGATGAATTGCAGCCACCACCATATCAGGATGACAGTGGTTCTCCCCATCTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TCATGTACACCCTCAGAAATTGGGGACAGTAAATGTGAATTTTCCCACTGCAGCAACAGTCCAAGATGCTCATA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TAACAAGTGCCCAAGTGAAGGAAGCACAGGTCATGAAATAGAAAGTTTTCATAATAAAGGATATGAAGAAGATG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTCCAAGTGACAGCACTGCAGTCCTGAGCCCTGAAGATATGTCAGCTCAAGGATCATCTTCGCAGCTTCCTAAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCTTTTGATCCTGAGCCAGAAGCTAAATATGGCACACTGGATGTGACTTTTGACTATGACTCACAAGAACAGAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GCTTCTGGTAACAGTGACAGCTGTCACAGACATCCCAACATATAACAGGACAGGTGGCAACTCATGGCAAGTAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ACCTTGTTCTTCTACCTATAAAGAAACAGAGAGCAAAAACCAGCATCCAGAGAGGACCATGCCCTGTCTTCACA 1110
Query 1 -------------------ATGTTGGA---GGGCT------------TCCAGATCTTGGTTCAGA----ATACA 36
||||||.| |.|.| |.|||.|| ||||.||| ||...
Sbjct 1111 GAAACATTTAAATTTAATCATGTTGAATCTGAGATGATTGGAAATTATGCAGTTC--GGTTTAGACTGTATGGT 1182
Query 37 GTACA----AGGAACAA-------------------------------TTCACAAGAT--------------AA 61
||||| |.|||.|| ||.||||.|| ||
Sbjct 1183 GTACATCGCATGAAAAAAGAAAAGATTGTGGGGGAAAAGATTTTTTATTTAACAAAATTGAATCTTCAAGGGAA 1256
Query 62 AATG--------------------------------------TGTCTGTGACTCCCAAATGAGTGTGTCAGAAA 97
|||| ||.||||||||||||||||||.||||||||||
Sbjct 1257 AATGTCATTGCCTGTGATATTGGAACCTTCTTACAATCATTCTGGCTGTGACTCCCAAATGAGCGTGTCAGAAA 1330
Query 98 TGTCTTGTAGTGAAAGTACATCCGCATGTCAGTCTCTCGAAGACGGGTCAGTTCCAGAAATTCTCATTAGCCTG 171
||||.||||||||||||||||||.|||||||||||||.|||.|.||.|||||||||||||||||.|||.|||||
Sbjct 1331 TGTCGTGTAGTGAAAGTACATCCTCATGTCAGTCTCTTGAACATGGCTCAGTTCCAGAAATTCTTATTGGCCTG 1404
Query 172 CTTTATAATGCCACAAATGGGAGACTATCAGCAGAAGTGATAAAAGGCAGCCACTTAAAAAATTGGGCAGCAAA 245
||||||||||||||||.|||.|||||||||||||||||||||||||||||||||||.|||||||.|||||||||
Sbjct 1405 CTTTATAATGCCACAACTGGAAGACTATCAGCAGAAGTGATAAAAGGCAGCCACTTCAAAAATTTGGCAGCAAA 1478
Query 246 CAGACCACCCA---------------------------------------------------------ATACAT 262
||||||||||| ||||||
Sbjct 1479 CAGACCACCCAATGGACTGTTCTGTTGTCTAAAACACTTGATAGGTGGACAGGTTTATATAATCCGAGATACAT 1552
Query 263 ATGTTAAGTTAACTCTACGGAAATCCACGGATCAAGAGATGTCCAAATGCAAGATATCCATCCGCAGAGGGCGG 336
||||||||||||||||||.|||.||||.||.|||||||||||||||||||||||.|||||||||||||||||.|
Sbjct 1553 ATGTTAAGTTAACTCTACTGAATTCCATGGGTCAAGAGATGTCCAAATGCAAGACATCCATCCGCAGAGGGCAG 1626
Query 337 CCAAATCCAGTATACAAGGAAACTTTTGT-TTTCAAAGTGACCCTATTTCAGCTTTCTCATGTGACACTCATGC 409
||||||||||||||.|||||||||||||| |||| |||||.|||||||||||||||||.|||||||||||||.|
Sbjct 1627 CCAAATCCAGTATATAAGGAAACTTTTGTCTTTC-AAGTGGCCCTATTTCAGCTTTCTGATGTGACACTCATAC 1699
Query 410 TGTCTGTGTATAACAAAAGCAGCATGAGAAGAA---AGATGATAGGCTGGATTTATTTAGGTCTCAACAGCTCT 480
|||||||||||||||||.|||||||||.||||| ||||||||||||||||||.|||||||||||||||||||
Sbjct 1700 TGTCTGTGTATAACAAACGCAGCATGAAAAGAAAAGAGATGATAGGCTGGATTTCTTTAGGTCTCAACAGCTCT 1773
Query 481 GG---AGAAGAACTCAATCACTGGACTGAAATGAAAGAGTCAAAAGGACGGCAAGTACGTAGATGGCAGGCGTT 551
|| ||||||||||||||||||||||||||||||||||||||||||||.|||||||.||||||||||.|||||
Sbjct 1774 GGAGAAGAAGAACTCAATCACTGGACTGAAATGAAAGAGTCAAAAGGACAGCAAGTATGTAGATGGCATGCGTT 1847
Query 552 GCTAGAGTCACGA 564
||||||||||
Sbjct 1848 GCTAGAGTCA--- 1857