Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10735
- Subject:
- XR_382744.3
- Aligned Length:
- 5238
- Identities:
- 533
- Gaps:
- 4628
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGAGAGCCCGTGTTGTTGCATCCCCCAGTTCCCCGGTCTGTCATGGCAGCGCCCAGGCCTCCAGCCGGTGTGTG 74
Query 1 --------ATGCTGGGGTTTTTGTCCGCACGCCAAACGGGTTTGGAGGACCCTCTTCGCCTTCGGAGAGCAGAG 66
|||.||.|.|||||||||||.||.||..|||||||||||||||||||||||.|.||.|||||..||
Sbjct 75 GACCCGAGATGTTGAGCTTTTTGTCCGCTCGACAGTCGGGTTTGGAGGACCCTCTTCGCTTGCGTAGAGCGCAG 148
Query 67 TCAACACGGAGAGTTTTGGGACTGGAATTAAATAAAGACAGAGATGTTGAAAGAATCCACGGCGGTGGAATTAA 140
||.||||||||.||..||||.|||||.|||||.||||||||.|||||.|||||||||||.|||.||||..||||
Sbjct 149 TCCACACGGAGGGTCCTGGGGCTGGAGTTAAACAAAGACAGGGATGTGGAAAGAATCCATGGCAGTGGGGTTAA 222
Query 141 CACCCTTGACATTGAACCTGTTGAAGGGAGATACATGTTATCAGGTGGTTCAGATGGTGTGATTGTACTTTATG 214
||||||.||||||||.||.||||||||.|||||||||||.||||||||.||.|||||.|||.|||||||.||||
Sbjct 223 CACCCTCGACATTGAGCCCGTTGAAGGAAGATACATGTTGTCAGGTGGCTCCGATGGCGTGGTTGTACTCTATG 296
Query 215 ACCTTGAGAACTCCAGCAGACAATCTTATTACACATGTAAAGCAGTGTGTTCCATTGGCAGAGATCATCCTGAT 288
|||||||||||.||||||||||..|..||||||||||||||||||||||||||.||||||||...|||||.|||
Sbjct 297 ACCTTGAGAACGCCAGCAGACAGCCCCATTACACATGTAAAGCAGTGTGTTCCGTTGGCAGAAGCCATCCCGAT 370
Query 289 GTTCACAGATACAGTGTGGAGACTGTACAGTGGTATCCTCATGACACTGGCATGTTCACATCAAGCTCATTTGA 362
|||||||.||||||.|||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 371 GTTCACAAATACAGCGTGGAGACTGTTCAGTGGTATCCTCATGACACTGGCATGTTCACATCCAGCTCATTTGA 444
Query 363 TAAAACTCTGAAAGTATGGGATACAAATACATTACAAACTGCAGATGTATTTAATTTTGAGGAAACAGTTTACA 436
|||||||||||||||.|||||||||||.|||||.||..||||||||||.|||||||||||||||||||||||||
Sbjct 445 TAAAACTCTGAAAGTGTGGGATACAAACACATTGCAGGCTGCAGATGTGTTTAATTTTGAGGAAACAGTTTACA 518
Query 437 GTCATCATATGTCTCCAGTCTCCACCAAGCACTGTTTGGTAGCAGTTGGTACTAGAGGACCCAAAGTACAACTT 510
|||||||.|||||.||||...||||||||||||||.|||||||||||||.||.|||||||||||.|||||||||
Sbjct 519 GTCATCACATGTCCCCAGCAGCCACCAAGCACTGTCTGGTAGCAGTTGGAACAAGAGGACCCAAGGTACAACTT 592
Query 511 TGTGACTTGAAGTCTGGATCCTGTTCTCACATTCTACAGGGT------------ATTTT--TATTT-------- 562
||||||||.||||||||||||||||||||||||||||||||| ||.|| .|.||
Sbjct 593 TGTGACTTAAAGTCTGGATCCTGTTCTCACATTCTACAGGGTCACAGACAGGAAATCTTGGCAGTTTCCTGGTC 666
Query 563 -------------TATTTC----AAACGGCAACTACT-----TTGAGTAAACGATTCAA-------TAAAAAGA 607
|||.|| .|||.||||.|.|| |.||||||| ||| | |.|.|||
Sbjct 667 ACCACGCCATGACTATATCTTGGCAACAGCAAGTGCTGACAGTAGAGTAAA--ATT--ATGGGATGTGAGAAG- 735
Query 608 AACG-------------TTAC----------------------------------------------------- 615
|.|| ||||
Sbjct 736 AGCGTCAGGATGCTTGCTTACTCTTGACCAGCATAATGGGAAAAAGTCACAAGCTGCTGAATCAGCAAACACTG 809
Query 616 -------------------------------------------------------------------------- 615
Sbjct 810 CTCACAATGGGAAAGTTAACGGCTTATGTTTTACAAGTGACGGCCTTCACCTGCTCACCATTGGCACAGACAAC 883
Query 616 -------------------------------------------------------------------------- 615
Sbjct 884 CGAATGCGCCTCTGGAATAGCTCCAGCGGGGACAACACCCTGCACCATCGCTGTGTACGCAGTCCACTCGGGAG 957
Query 616 -------------------------------------------------------------------------- 615
Sbjct 958 AGCGGCTCGCCATGCTCAAGGGACATTACAAAAGCGTCGACTGCTGTGTGTTCCAGCCTAATTTCCAGGAACTT 1031
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1032 TACAGTGGAAGCAGGGACTGCAATATTCTTGCTTGGGTACCACCTTCCTATGAGCCAGTTCCTGATGATGACGA 1105
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1106 TGAAGCTCCAGCCAAATCCCAGTTAAACCCAGCATTCGCGGACGCCTGGAGCAGCAGTGACGAGGATGGGTGAC 1179
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1180 TGTCAGCCCTGGCTCCTTGTCCATCAGACTTCCACGACAGTGTTGTGTGCACTTCAGCACGAGCAGGGTTGTTC 1253
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1254 TTCCCGTTATTGTTGGTTTTGAGACAGTGTCTCACGATGTAACCCTGGCTAGCCTGGACTAGCCTGGAACTCTG 1327
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1328 TATAGAGCAGACTCGGCTCACACTGGCAGCTATTCTGCCTCTGCTCCCAGGTGCTGGGGTTAGAGGTGTATACC 1401
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1402 ACGTGGCCCCTCCTGTACATGTGTGTGATTGTTTGTTTCATTGTTTGTAAACTCTTCAGTCAGTTTTTAACCTG 1475
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1476 TTAATCCTGAGTTTGGGATATTTCCCTGTGTGCTTTAAAATGAGATCGATGTGTATGATACCCTGAAATATACT 1549
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1550 TTTCTGTCGGTTAATTAATCAGAACTTGTCTCCTTGAGCGCATTCACCAGGGTGGTGGGCCAGCCCCTACGGGC 1623
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1624 ACAGCCCAAGAACAGACTTGTTATTCCCAGCTGGGACCTTCATATGTGCATCCAAGGAGCTGAAAGTATGACCC 1697
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1698 AGGAAGCTCTCAGCTCTGACTCCTGACTGTGCTGCCAGCCTGCCCTTCCCACCTTCAGGGAGGAGTTTAGCAAG 1771
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1772 GAGGATTAGAGAAACTTGTTGCAACAGTGGCATCATAATGCTAGATTTTTTACTCAAACTGAATGGCTTCATGT 1845
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1846 AATCGAGCCTCTTCTCCCTCATATTGAATGTTAGCCACTCATGCATCTTGCAGTGTGAACATCGTATCACATAG 1919
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1920 GCAATCCCTGACCACTTTGTATTGCTCTCAGAGGGCAGCTTACACTCAGTCTTAATTCCTTCCTGTGAAACTCA 1993
Query 616 -------------------------------------------------------------------------- 615
Sbjct 1994 GCAAAATCCATGCAGGGATGTAGATTAAACATGAAATGCCATACAATTGTTCTTTCCTTTCCTTGTGTCAACTC 2067
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2068 AGGAGTGATTGTTATGAAGTCTCCTCCATTCTTTGTGTGTGTGTGTGTGTGTGTTAATTTAAGTTCTGTTGCTG 2141
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2142 TGATAAAATACCCTGAACAAAGACAATTTAGGAGAGAAAGTGTTTATTTCAGTTAACCTAGAATTGTTAACAAA 2215
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2216 CACTTTCACTGTGACTCACTGTGGAAAAGTCAAGACAGAAGCCTCACAAAGCTAGGCACATGGCCTTGCAGTCA 2289
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2290 GAGAAGTGAGTGCGCAGAGCCTTCGCTGCCCAGCTAAAGTGAAGTGACCTCACGGAGAGAAATGGCTTCTCTAA 2363
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2364 CTGAAACTCTATTCATGAAATCTGTGCCGAAAAGTTCCATCTAGAACAGACAAGGAAAAGATAGAAAATAAAAC 2437
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2438 TTTAGAGAAATTCTGAAGACAGGCCCTGAGTTATACCAACTGTAAGATGCAAATGACTTCAGGCTGGTGTGAAC 2511
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2512 ACGGTGACTGACGAGGGAGGTGGGAACAGGGAGGTGGGAACAGGGAGGGTTGTGTGTTTGCGGCAAACCTGGGA 2585
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2586 AGCAGGAAATAGTAGTCATGTTTTTCATGTCTGGAATCAAATGCCTAACAAAGGAGGAAGCATCGATTCTAGCA 2659
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2660 AATGGTTTGAATGTACAGGACACCGAGGTGGAAAGAAACAGATGGTAGGAACAGCGACAGAAGCAGGAGGCAGA 2733
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2734 CAAGAAGGCACAGACAGGACAGGAAGCAGCGGGGCCAGGCATGAATGTCAAGAGTGCAGTCTCAGAAAAACAGC 2807
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2808 ACTGCCAGCTAGGATCTGAATACCATGGGGACATTTTACATTCATCCACCACTGGTCTCTATAGGTTCATGGCC 2881
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2882 ATCTCATAATGCAAAATGCATTTGGTTCAACTTCAAAAGTCCCCGTACTCCTTCAAATCCAACCCTTGAAAGCG 2955
Query 616 -------------------------------------------------------------------------- 615
Sbjct 2956 CTAATATTCCCTTGTTCCTGTAGAATAGACGAGTAACCATTCCCATTCCACCACAGCGGAAAGACTGGACCAAA 3029
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3030 GCAAGATGCAGACCCAGCAGAGGGAAGGAAGCTCAAGTTCCATGTCCGCACCTGGGCCTATTATGGCATCTTGA 3103
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3104 CTTCAACAGGCTCAGCTCCATTCTTTAGATCTGTTGCCAGCAGCATGCCTGGCCTTTCTTAGACCAGTTCCACC 3177
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3178 CAGTGCCTGGACCTTTCTTCCCTCAGATATGCCACACTTCTGATACCTGCAGTATCCTGGGGTCTCCACTGTGA 3251
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3252 CTTGAACTTCCCCTTTACAGTTCATGCACGGCCCACTCAGGAGCTCCATGCAGGGAGCCTGGCCTCCCTTCCGT 3325
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3326 GGCTCTTCTGGAATCTCGGTGCACGCTTCCATGATACTTGGAGTTTGCAGGGCTGGAAAACTAACACTACATAG 3399
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3400 AAAACACCAAGTGCTGCTGTCCTTCCCAGATGTAGCCTGGCACTCTTCAGCCATGGCTGCAGCAGCTTCCATGT 3473
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3474 GATCTAGGATGGGCTCTCGCTTTTGAGTAGGGAACCCTGCGGAGGCTCTCTGACTTCGGACACCTCTGCTCTCT 3547
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3548 CTCTGAGTTCTCATGTTTATATCCTGGGACTTAGAGCCGGACTGTCTGTCGGGCTGTCGGGTGCAGAGCTAGGT 3621
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3622 TTCTTTCTCTTTCCTATCATTCACCTTACTACTAGCTGCTGTCCCCACACACACACACACACACACACACACAC 3695
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3696 TGCAAGTTTAAACTCATTCAGCTTATTTCTTGCCTAGCTGTAGATTTATCATCTTTCTACTTTCTTCCTGTAAG 3769
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3770 TCTGGGCAGTGAGCAGTGACCATCCTCCAGCCTGTGTGCTCTGCTGGCCTGAAGCTTCCTCCACAAAGCAGTTT 3843
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3844 ATCCTAAATTCAACGTCACTCGGATTATCAGGACATGGCTGATTATAACACGAGTAGCCTCTAGTTCAGTTCCA 3917
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3918 GTTTGGGTCCTCCTTCCTCTTGGACTCGAAAGCATCTCTCTTGGTGGTGTGATTTTCTGAGCTCCAGCTAAAAT 3991
Query 616 -------------------------------------------------------------------------- 615
Sbjct 3992 GGCTCAGTAAGTCTACTTACAGCATTCAGGATGTTCTTTAAGCCACAACTCTAACTTAATCTTTCTCCTGCAAA 4065
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4066 TTAGTCCCAAAGTTTGCAGGACACATAATCACATTTATCTTAGCAACAACCCTACTCCATAGCACAAACCTTGC 4139
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4140 TCTCAGTGCCAGTTTTATTTTTTTAACATTTGTTTTTATTATTTTTATGATATGTATCGTATGGACATGTGTCG 4213
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4214 GTGAGTGCAGAGACCCGTGGAGCTCAGCAGTGTCTGATCCCCTCGGAACTGTAGTTACAGGTAGTTCTGGATGC 4287
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4288 TAAGAACCAAACTTGGGGTCTCTAGAAATACAGTACTGAGACATTTCTCCAGCGCCATGTTTTCTGTGTTAGTC 4361
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4362 TTCACACAGTGACCAAATAGCTGGCAAGAAAAAAAATAAAAATCAAAGCAAAAGGAGGAAGGATTGATTGACTT 4435
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4436 AGTTTATTAAAGCAACGAACTTAGTTCCGTCAAACCTTGCCAGAAATGGAATGGCAGAAGCCTGGCACACAGGG 4509
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4510 AATTTTGCCTTTCAGAGAATATACCAGGGAAAGCTAACTACAGAAAGAACAACCACCTTGCCTGTCACTGTGTT 4583
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4584 TAGATAGGCTGGTTACAGCAGGGCTGGGTTAGAGAGGGACTCAGTACTGGGGAGAATTAGATTGCTGCCCTATA 4657
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4658 GTTAACAGTTCAGTTGTGAATGTGGCTTTTCTTTTTGTGTGCAGGGGTTTGGTTTTGGTGTTTTGTTTGTTTTT 4731
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4732 GAGACAGGCTGACCTTGAGCTTGCTGTGTATGTAGCCCAGTGTCTTAGTGAGTGTTCTATTACTGTGAAGCCAC 4805
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4806 ACCAAAACCACAGTGACTCTTACAAGGGAAGGCATTTAATTGGGGGCTCAGTCCATTTTCATGAAGGTGAAGAT 4879
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4880 CGGGATGGCACGCAGGGAGACATGGCACTGGAGAGGTAGCTAAGAGTTGTACGTCTGAGTCTGCAGACAGCAGG 4953
Query 616 -------------------------------------------------------------------------- 615
Sbjct 4954 AAGAGAGCCTCTAGACTTGGAATGGGCTTTGGAACCTCAGGGTCTACACCTAATGACACACTTCCTCCAACAAG 5027
Query 616 -------------------------------------------------------------------------- 615
Sbjct 5028 GCCACACCTCTTTGTCCTTTCATATAGTGCCCCTCTCTGGTGCCCAGTATACAACTCTGTGAGCCTATGGAGGC 5101
Query 616 -------------------------------------------------------------------------- 615
Sbjct 5102 CGTTCTCATTCAAACCACCACACTCAGTCTGGATTCCAGCTCCGGATCCTGCAGCCTTAGCTTCCCCGGTGCTG 5175
Query 616 ---------------------------------------------------------- 615
Sbjct 5176 GGATGGCAGACATGGGCCTCCACAATGCCTAGTCTTTTTTTTTTTTTTTTTTTTTTTT 5233
