Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10736
Subject:
NM_001171088.3
Aligned Length:
2562
Identities:
1160
Gaps:
1401

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCGGCCGCGGCGGCGGAGGAAGGGATGGAGCCACGGGCGCTGCAGTACGAGCAGACCCTGATGTATGGCCG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTACACTCAGGACCTTGGGGCCTTTGCCAAAGAGGAAGCTGCTCGGATTCGCCTGGGAGGGCCTGAACCCTGGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAGGTCCCCCTTCCTCTCGGGCTGCCCCAGAGCTCTTGGAATATGGACGGAGCCGTTGCGCCCGATGCCGCGCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CAGCAGTGGATGTCCCGGGGCTTGAACACCAGCATCTTGCTCCAGTACCTGGCCTGGGTCACCTACCCTGTTGT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCTCATCACTTTCTCAGCCGGATTCACACAGATCCTGGCCCCTCAGGCTGTCGGCTCTGGCATCCCTGAGATGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGACCATCTTGCGGGGAGTGGTGCTGAAAGAATACCTCACACTCAAGACCTTTATAGCTAAGGTCATTGGGCTG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACCTGCGCCCTAGGCAGCGGGATGCCGCTTGGCAAAGAGGGCCCTTTTGTGCATATCGCAAGCATGTGTGCTGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CCTTCTCAGCAAGTTCCTCTCCCTCTTTGGGGGTATCTATGAGAATGAATCCCGGAACACAGAGATGCTGGCTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCGCCTGTGCCGTGGGGGTGGGCTGCTGCTTCGCGGCACCTATTGGAGGCGTCCTCTTCAGCATCGAGGTCACC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TCCACCTTCTTTGCAGTGCGGAACTACTGGCGGGGCTTCTTCGCTGCCACCTTCAGTGCCTTCATCTTCCGGGT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTTGGCAGTCTGGAACCGGGATGAAGAGACTATTACAGCCCTCTTCAAAACCCGATTCCGGCTCGACTTCCCCT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TTGACCTGCAGGAGCTGCCAGCCTTTGCTGTCATTGGTATTGCTAGTGGCTTCGGTGGAGCCCTCTTTGTCTAC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CTGAACCGGAAGATTGTCCAGGTGATGCGGAAGCAGAAAACCATCAATCGCTTCCTCATGAGGAAACGCCTGCT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CTTCCCGGCTCTGGTGACCCTGCTCATCTCCACGCTGACCTTCCCCCCTGGCTTTGGACAGTTCATGGCTGGAC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AGCTCTCACAGAAAGAGACGCTGGTCACCCTGTTTGACAATCGGACGTGGGTCCGCCAGGGCCTGGTGGAGGAG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CTAGAACCACCCAGCACCTCACAGGCCTGGAACCCACCACGTGCCAACGTCTTCCTCACCCTGGTCATCTTCAT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TCTCATGAAGTTCTGGATGTCTGCACTGGCCACCACCATCCCAGTTCCCTGTGGGGCCTTCATGCCTGTCTTTG  1258

Query    1  --------------------------------------ATGGCTGCCTGGTTCCCAGATGGAATTCATACGGAC  36
                                                  ||||||||||||||||||||||||||||||||||||
Sbjct 1259  TCATTGGAGCAGCATTTGGGCGTCTGGTGGGTGAAAGCATGGCTGCCTGGTTCCCAGATGGAATTCATACGGAC  1332

Query   37  AGCAGCACCTACCGGATTGTGCCTGGGGGCTACGCTGTGGTCGGGGCAGCTGCGCTGGCAGGAGCGGTGACACA  110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AGCAGCACCTACCGGATTGTGCCTGGGGGCTACGCTGTGGTCGGGGCAGCTGCGCTGGCAGGAGCGGTGACACA  1406

Query  111  CACAGTGTCCACGGCTGTGATCGTGTTCGAGCTCACAGGCCAGATTGCCCACATCCTGCCTGTCATGATCGTCG  184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 1407  CACAGTGTCCACGGCTGTGATCGTGTTCGAGCTCACAGGCCAGATTGCCCACATCCTGCCTGTCATGATCGCCG  1480

Query  185  TCATCCTGGCCAACGCTGTCGCCCAGAGTCTGCAGCCCTCCCTCTATGACAGCATCATCCGAATCAAGAAACTG  258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TCATCCTGGCCAACGCTGTCGCCCAGAGTCTGCAGCCCTCCCTCTATGACAGCATCATCCGAATCAAGAAACTG  1554

Query  259  CCCTACCTGCCTGAGCTCGGCTGGGGCCGCCACCAGCAGTACCGGGTGCGTGTGGAGGACATCATGGTGCGGGA  332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CCCTACCTGCCTGAGCTCGGCTGGGGCCGCCACCAGCAGTACCGGGTGCGTGTGGAGGACATCATGGTGCGGGA  1628

Query  333  TGTTCCCCATGTGGCCCTCAGCTGCACCTTCCGGGACCTGCGTTTGGCACTGCACAGGACCAAGGGCCGAATGC  406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TGTTCCCCATGTGGCCCTCAGCTGCACCTTCCGGGACCTGCGTTTGGCACTGCACAGGACCAAGGGCCGAATGC  1702

Query  407  TGGCCCTAGTGGAGTCCCCTGAGTCCATGATTCTGCTGGGCTCCATCGAGCGTTCACAGGTGGTGGCATTGTTG  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  TGGCCCTAGTGGAGTCCCCTGAGTCCATGATTCTGCTGGGCTCCATCGAGCGTTCACAGGTGGTGGCATTGTTG  1776

Query  481  GGGGCCCAGCTGAGCCCAGCCCGCCGGCGGCAGCACATGCAGGAGCGCAGAGCCACCCAGACCTCTCCACTATC  554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GGGGCCCAGCTGAGCCCAGCCCGCCGGCGGCAGCACATGCAGGAGCGCAGAGCCACCCAGACCTCTCCACTATC  1850

Query  555  TGATCAGGAGGGTCCCCCTACCCCTGAGGCTTCTGTCTGCTTCCAGGTGAACACAGAAGACTCAGCCTTCCCAG  628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  TGATCAGGAGGGTCCCCCTACCCCTGAGGCTTCTGTCTGCTTCCAGGTGAACACAGAAGACTCAGCCTTCCCAG  1924

Query  629  CAGCCCGGGGGGAGACCCACAAGCCCCTAAAGCCTGCACTCAAGAGGGGGCCCAGTGTCACCAGGAACCTCGGA  702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  CAGCCCGGGGGGAGACCCACAAGCCCCTAAAGCCTGCACTCAAGAGGGGGCCCAGTGTCACCAGGAACCTCGGA  1998

Query  703  GAGAGTCCCACAGGGAGCGCAGAGTCGGCAGGCATCGCCCTCCGGAGCCTCTTCTGTGGCAGTCCACCCCCTGA  776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  GAGAGTCCCACAGGGAGCGCAGAGTCGGCAGGCATCGCCCTCCGGAGCCTCTTCTGTGGCAGTCCACCCCCTGA  2072

Query  777  GGCTGCTTCGGAGAAGTTGGAATCCTGTGAGAAGCGCAAGCTGAAGCGTGTCCGAATCTCCCTGGCAAGTGACG  850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  GGCTGCTTCGGAGAAGTTGGAATCCTGTGAGAAGCGCAAGCTGAAGCGTGTCCGAATCTCCCTGGCAAGTGACG  2146

Query  851  CGGACCTGGAAGGCGAGATGAGCCCTGAAG--------------------------------------------  880
            ||||||||||||||||||||||||||||||                                            
Sbjct 2147  CGGACCTGGAAGGCGAGATGAGCCCTGAAGAGATTCTGGAGTGGGAGGAGCAGCAACTAGATGAACCTGTCAAC  2220

Query  881  -------------------------------------------------------------AGACTCACACTAT  893
                                                                         |||||||||||||
Sbjct 2221  TTCAGTGACTGCAAAATTGATCCTGCTCCCTTCCAGCTGGTGGAGCGGACCTCTTTGCACAAGACTCACACTAT  2294

Query  894  CTTCTCACTGCTGGGAGTGGACCATGCTTATGTCACCAGTATTGGCAGACTCATTGGAATCGTTACTCTAAAGG  967
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  CTTCTCACTGCTGGGAGTGGACCATGCTTATGTCACCAGTATTGGCAGACTCATTGGAATCGTTACTCTAAAGG  2368

Query  968  AGCTCCGGAAGGCCATCGAGGGCTCTGTCACAGCACAGGGTGTGAAAGTCCGGCCGCCCCTCGCCAGCTTCCGA  1041
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  AGCTCCGGAAGGCCATCGAGGGCTCTGTCACAGCACAGGGTGTGAAAGTCCGGCCGCCCCTCGCCAGCTTCCGA  2442

Query 1042  GACAGTGCCACCAGCAGCAGTGACACGGAGACCACTGAGGTGCATGCACTCTGGGGGCCCCACTCCCGTCATGG  1115
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  GACAGTGCCACCAGCAGCAGTGACACGGAGACCACTGAGGTGCATGCACTCTGGGGGCCCCACTCCCGTCATGG  2516

Query 1116  CCTCCCCCGGGAGGGCAGCCCTTCCGACAGCGACGACAAATGCCAA  1161
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  CCTCCCCCGGGAGGGCAGCCCTTCCGACAGCGACGACAAATGCCAA  2562

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