Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10736
- Subject:
- NM_001171088.3
- Aligned Length:
- 2562
- Identities:
- 1160
- Gaps:
- 1401
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCGGCCGCGGCGGCGGAGGAAGGGATGGAGCCACGGGCGCTGCAGTACGAGCAGACCCTGATGTATGGCCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTACACTCAGGACCTTGGGGCCTTTGCCAAAGAGGAAGCTGCTCGGATTCGCCTGGGAGGGCCTGAACCCTGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAGGTCCCCCTTCCTCTCGGGCTGCCCCAGAGCTCTTGGAATATGGACGGAGCCGTTGCGCCCGATGCCGCGCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAGCAGTGGATGTCCCGGGGCTTGAACACCAGCATCTTGCTCCAGTACCTGGCCTGGGTCACCTACCCTGTTGT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCTCATCACTTTCTCAGCCGGATTCACACAGATCCTGGCCCCTCAGGCTGTCGGCTCTGGCATCCCTGAGATGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGACCATCTTGCGGGGAGTGGTGCTGAAAGAATACCTCACACTCAAGACCTTTATAGCTAAGGTCATTGGGCTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACCTGCGCCCTAGGCAGCGGGATGCCGCTTGGCAAAGAGGGCCCTTTTGTGCATATCGCAAGCATGTGTGCTGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCTTCTCAGCAAGTTCCTCTCCCTCTTTGGGGGTATCTATGAGAATGAATCCCGGAACACAGAGATGCTGGCTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCGCCTGTGCCGTGGGGGTGGGCTGCTGCTTCGCGGCACCTATTGGAGGCGTCCTCTTCAGCATCGAGGTCACC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TCCACCTTCTTTGCAGTGCGGAACTACTGGCGGGGCTTCTTCGCTGCCACCTTCAGTGCCTTCATCTTCCGGGT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTGGCAGTCTGGAACCGGGATGAAGAGACTATTACAGCCCTCTTCAAAACCCGATTCCGGCTCGACTTCCCCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTGACCTGCAGGAGCTGCCAGCCTTTGCTGTCATTGGTATTGCTAGTGGCTTCGGTGGAGCCCTCTTTGTCTAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTGAACCGGAAGATTGTCCAGGTGATGCGGAAGCAGAAAACCATCAATCGCTTCCTCATGAGGAAACGCCTGCT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTTCCCGGCTCTGGTGACCCTGCTCATCTCCACGCTGACCTTCCCCCCTGGCTTTGGACAGTTCATGGCTGGAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGCTCTCACAGAAAGAGACGCTGGTCACCCTGTTTGACAATCGGACGTGGGTCCGCCAGGGCCTGGTGGAGGAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CTAGAACCACCCAGCACCTCACAGGCCTGGAACCCACCACGTGCCAACGTCTTCCTCACCCTGGTCATCTTCAT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCTCATGAAGTTCTGGATGTCTGCACTGGCCACCACCATCCCAGTTCCCTGTGGGGCCTTCATGCCTGTCTTTG 1258
Query 1 --------------------------------------ATGGCTGCCTGGTTCCCAGATGGAATTCATACGGAC 36
||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCATTGGAGCAGCATTTGGGCGTCTGGTGGGTGAAAGCATGGCTGCCTGGTTCCCAGATGGAATTCATACGGAC 1332
Query 37 AGCAGCACCTACCGGATTGTGCCTGGGGGCTACGCTGTGGTCGGGGCAGCTGCGCTGGCAGGAGCGGTGACACA 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AGCAGCACCTACCGGATTGTGCCTGGGGGCTACGCTGTGGTCGGGGCAGCTGCGCTGGCAGGAGCGGTGACACA 1406
Query 111 CACAGTGTCCACGGCTGTGATCGTGTTCGAGCTCACAGGCCAGATTGCCCACATCCTGCCTGTCATGATCGTCG 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 1407 CACAGTGTCCACGGCTGTGATCGTGTTCGAGCTCACAGGCCAGATTGCCCACATCCTGCCTGTCATGATCGCCG 1480
Query 185 TCATCCTGGCCAACGCTGTCGCCCAGAGTCTGCAGCCCTCCCTCTATGACAGCATCATCCGAATCAAGAAACTG 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TCATCCTGGCCAACGCTGTCGCCCAGAGTCTGCAGCCCTCCCTCTATGACAGCATCATCCGAATCAAGAAACTG 1554
Query 259 CCCTACCTGCCTGAGCTCGGCTGGGGCCGCCACCAGCAGTACCGGGTGCGTGTGGAGGACATCATGGTGCGGGA 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CCCTACCTGCCTGAGCTCGGCTGGGGCCGCCACCAGCAGTACCGGGTGCGTGTGGAGGACATCATGGTGCGGGA 1628
Query 333 TGTTCCCCATGTGGCCCTCAGCTGCACCTTCCGGGACCTGCGTTTGGCACTGCACAGGACCAAGGGCCGAATGC 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TGTTCCCCATGTGGCCCTCAGCTGCACCTTCCGGGACCTGCGTTTGGCACTGCACAGGACCAAGGGCCGAATGC 1702
Query 407 TGGCCCTAGTGGAGTCCCCTGAGTCCATGATTCTGCTGGGCTCCATCGAGCGTTCACAGGTGGTGGCATTGTTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TGGCCCTAGTGGAGTCCCCTGAGTCCATGATTCTGCTGGGCTCCATCGAGCGTTCACAGGTGGTGGCATTGTTG 1776
Query 481 GGGGCCCAGCTGAGCCCAGCCCGCCGGCGGCAGCACATGCAGGAGCGCAGAGCCACCCAGACCTCTCCACTATC 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 GGGGCCCAGCTGAGCCCAGCCCGCCGGCGGCAGCACATGCAGGAGCGCAGAGCCACCCAGACCTCTCCACTATC 1850
Query 555 TGATCAGGAGGGTCCCCCTACCCCTGAGGCTTCTGTCTGCTTCCAGGTGAACACAGAAGACTCAGCCTTCCCAG 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TGATCAGGAGGGTCCCCCTACCCCTGAGGCTTCTGTCTGCTTCCAGGTGAACACAGAAGACTCAGCCTTCCCAG 1924
Query 629 CAGCCCGGGGGGAGACCCACAAGCCCCTAAAGCCTGCACTCAAGAGGGGGCCCAGTGTCACCAGGAACCTCGGA 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 CAGCCCGGGGGGAGACCCACAAGCCCCTAAAGCCTGCACTCAAGAGGGGGCCCAGTGTCACCAGGAACCTCGGA 1998
Query 703 GAGAGTCCCACAGGGAGCGCAGAGTCGGCAGGCATCGCCCTCCGGAGCCTCTTCTGTGGCAGTCCACCCCCTGA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 GAGAGTCCCACAGGGAGCGCAGAGTCGGCAGGCATCGCCCTCCGGAGCCTCTTCTGTGGCAGTCCACCCCCTGA 2072
Query 777 GGCTGCTTCGGAGAAGTTGGAATCCTGTGAGAAGCGCAAGCTGAAGCGTGTCCGAATCTCCCTGGCAAGTGACG 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 GGCTGCTTCGGAGAAGTTGGAATCCTGTGAGAAGCGCAAGCTGAAGCGTGTCCGAATCTCCCTGGCAAGTGACG 2146
Query 851 CGGACCTGGAAGGCGAGATGAGCCCTGAAG-------------------------------------------- 880
||||||||||||||||||||||||||||||
Sbjct 2147 CGGACCTGGAAGGCGAGATGAGCCCTGAAGAGATTCTGGAGTGGGAGGAGCAGCAACTAGATGAACCTGTCAAC 2220
Query 881 -------------------------------------------------------------AGACTCACACTAT 893
|||||||||||||
Sbjct 2221 TTCAGTGACTGCAAAATTGATCCTGCTCCCTTCCAGCTGGTGGAGCGGACCTCTTTGCACAAGACTCACACTAT 2294
Query 894 CTTCTCACTGCTGGGAGTGGACCATGCTTATGTCACCAGTATTGGCAGACTCATTGGAATCGTTACTCTAAAGG 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 CTTCTCACTGCTGGGAGTGGACCATGCTTATGTCACCAGTATTGGCAGACTCATTGGAATCGTTACTCTAAAGG 2368
Query 968 AGCTCCGGAAGGCCATCGAGGGCTCTGTCACAGCACAGGGTGTGAAAGTCCGGCCGCCCCTCGCCAGCTTCCGA 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 AGCTCCGGAAGGCCATCGAGGGCTCTGTCACAGCACAGGGTGTGAAAGTCCGGCCGCCCCTCGCCAGCTTCCGA 2442
Query 1042 GACAGTGCCACCAGCAGCAGTGACACGGAGACCACTGAGGTGCATGCACTCTGGGGGCCCCACTCCCGTCATGG 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 GACAGTGCCACCAGCAGCAGTGACACGGAGACCACTGAGGTGCATGCACTCTGGGGGCCCCACTCCCGTCATGG 2516
Query 1116 CCTCCCCCGGGAGGGCAGCCCTTCCGACAGCGACGACAAATGCCAA 1161
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 CCTCCCCCGGGAGGGCAGCCCTTCCGACAGCGACGACAAATGCCAA 2562
