Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10736
- Subject:
- NM_001171089.3
- Aligned Length:
- 2642
- Identities:
- 1117
- Gaps:
- 1516
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCGGCCGCGGCGGCGGAGGAAGGGATGGAGCCACGGGCGCTGCAGTACGAGCAGACCCTGATGTATGGCCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTACACTCAGGACCTTGGGGCCTTTGCCAAAGAGGAAGCTGCTCGGATTCGCCTGGGAGGGCCTGAACCCTGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAGGTCCCCCTTCCTCTCGGGCTGCCCCAGAGCTCTTGGAATATGGACGGAGCCGTTGCGCCCGATGCCGCGTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGTTCTGTCCGCTGCCACAAGTTCCTAGTATCCAGGGTTGGTGAAGATTGGATCTTCCTGGTCCTGCTGGGGCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TCTCATGGCATTGGTCAGCTGGGTCATGGACTATGCCATTGCTGCCTGTCTGCAAGCCCAGCAGTGGATGTCCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGGGCTTGAACACCAGCATCTTGCTCCAGTACCTGGCCTGGGTCACCTACCCTGTTGTCCTCATCACTTTCTCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCCGGATTCACACAGATCCTGGCCCCTCAGGCTGTCGGCTCTGGCATCCCTGAGATGAAGACCATCTTGCGGGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGTGGTGCTGAAAGAATACCTCACACTCAAGACCTTTATAGCTAAGGTCATTGGGCTGACCTGCGCCCTAGGCA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCGGGATGCCGCTTGGCAAAGAGGGCCCTTTTGTGCATATCGCAAGCATGTGTGCTGCCCTTCTCAGCAAGTTC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CTCTCCCTCTTTGGGGGTATCTATGAGAATGAATCCCGGAACACAGAGATGCTGGCTGCCGCCTGTGCCGTGGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGTGGGCTGCTGCTTCGCGGCACCTATTGGAGGCGTCCTCTTCAGCATCGAGGTCACCTCCACCTTCTTTGCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGCGGAACTACTGGCGGGGCTTCTTCGCTGCCACCTTCAGTGCCTTCATCTTCCGGGTCTTGGCAGTCTGGAAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CGGGATGAAGAGACTATTACAGCCCTCTTCAAAACCCGATTCCGGCTCGACTTCCCCTTTGACCTGCAGGAGCT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GCCAGCCTTTGCTGTCATTGGTATTGCTAGTGGCTTCGGTGGAGCCCTCTTTGTCTACCTGAACCGGAAGATTG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TCCAGGTGATGCGGAAGCAGAAAACCATCAATCGCTTCCTCATGAGGAAACGCCTGCTCTTCCCGGCTCTGGTG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ACCCTGCTCATCTCCACGCTGACCTTCCCCCCTGGCTTTGGACAGTTCATGGCTGGACAGCTCTCACAGAAAGA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GACGCTGGTCACCCTGTTTGACAATCGGACGTGGGTCCGCCAGGGCCTGGTGGAGGAGCTAGAACCACCCAGCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CCTCACAGGCCTGGAACCCACCACGTGCCAACGTCTTCCTCACCCTGGTCATCTTCATTCTCATGAAGTTCTGG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ATGTCTGCACTGGCCACCACCATCCCAGTTCCCTGTGGGGCCTTCATGCCTGTCTTTGTCATTGGAGCAGCATT 1406
Query 1 ----------------------ATGGCTGCCTGGTTCCCAGATGGAATTCATACGGACAGCAGCACCTACCGGA 52
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TGGGCGTCTGGTGGGTGAAAGCATGGCTGCCTGGTTCCCAGATGGAATTCATACGGACAGCAGCACCTACCGGA 1480
Query 53 TTGTGCCTGGGGGCTACGCTGTGGTCGGGGCAGCTGCGCTGGCAGGAGCGGTGACACACACAGTGTCCACGGCT 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TTGTGCCTGGGGGCTACGCTGTGGTCGGGGCAGCTGCGCTGGCAGGAGCGGTGACACACACAGTGTCCACGGCT 1554
Query 127 GTGATCGTGTTCGAGCTCACAGGCCAGATTGCCCACATCCTGCCTGTCATGATCGTCGTCATCCTGGCCAACGC 200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 1555 GTGATCGTGTTCGAGCTCACAGGCCAGATTGCCCACATCCTGCCTGTCATGATCGCCGTCATCCTGGCCAACGC 1628
Query 201 TGTCGCCCAGAGTCTGCAGCCCTCCCTCTATGACAGCATCATCCGAATCAAGAAACTGCCCTACCTGCCTGAGC 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TGTCGCCCAGAGTCTGCAGCCCTCCCTCTATGACAGCATCATCCGAATCAAGAAACTGCCCTACCTGCCTGAGC 1702
Query 275 TCGGCTGGGGCCGCCACCAGCAGTACCGGGTGCGTGTGGAGGACATCATGGTGCGGGATGTTCCCCATGTGGCC 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TCGGCTGGGGCCGCCACCAGCAGTACCGGGTGCGTGTGGAGGACATCATGGTGCGGGATGTTCCCCATGTGGCC 1776
Query 349 CTCAGCTGCACCTTCCGGGACCTGCGTTTGGCACTGCACAGGACCAAGGGCCGAATGCTGGCCCTAGTGGAGTC 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CTCAGCTGCACCTTCCGGGACCTGCGTTTGGCACTGCACAGGACCAAGGGCCGAATGCTGGCCCTAGTGGAGTC 1850
Query 423 CCCTGAGTCCATGATTCTGCTGGGCTCCATCGAGCGTTCACAGGTGGTGGCATTGTTGGGGGCCCAGCTGAGCC 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 CCCTGAGTCCATGATTCTGCTGGGCTCCATCGAGCGTTCACAGGTGGTGGCATTGTTGGGGGCCCAGCTGAGCC 1924
Query 497 CAGCCCGCCGGCGGCAGCACATGCAGGAGCGCAGAGCCACCCAGACCTCTCCACTATCTGATCAGGAGGGTCCC 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 CAGCCCGCCGGCGGCAGCACATGCAGGAGCGCAGAGCCACCCAGACCTCTCCACTATCTGATCAGGAGGGTCCC 1998
Query 571 CCTACCCCTGAGGCTTCTGTCTGCTTCCAGGTGAACACAGAAGACTCAGCCTTCCCAGCAGCCCGGGGGGAGAC 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 CCTACCCCTGAGGCTTCTGTCTGCTTCCAGGTGAACACAGAAGACTCAGCCTTCCCAGCAGCCCGGGGGGAGAC 2072
Query 645 CCACAAGCCCCTAAAGCCTGCACTCAAGAGGGGGCCCAGTGTCACCAGGAACCTCGGAGAGAGTCCCACAGGGA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 CCACAAGCCCCTAAAGCCTGCACTCAAGAGGGGGCCCAGTGTCACCAGGAACCTCGGAGAGAGTCCCACAGGGA 2146
Query 719 GCGCAGAGTCGGCAGGCATCGCCCTCCGGAGCCTCTTCTGTGGCAGTCCACCCCCTGAGGCTGCTTCGGAGAAG 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 GCGCAGAGTCGGCAGGCATCGCCCTCCGGAGCCTCTTCTGTGGCAGTCCACCCCCTGAGGCTGCTTCGGAGAAG 2220
Query 793 TTGGAATCCTGTGAGAAGCGCAAGCTGAAGCGTGTCCGAATCTCCCTGGCAAGTGACGCGGACCTGGAAGGCGA 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 TTGGAATCCTGTGAGAAGCGCAAGCTGAAGCGTGTCCGAATCTCCCTGGCAAGTGACGCGGACCTGGAAGGCGA 2294
Query 867 GATGAGCCCTGAAGAGACTCACACTATCTTCTCACTGCTGGGAGTGG--------------------ACCATG- 919
||||||||||||||||| |||| ||||||| ||| ||
Sbjct 2295 GATGAGCCCTGAAGAGA-----------TTCT--------GGAGTGGGAGGAGCAGCAACTAGATGAACC-TGT 2348
Query 920 ---CTTATGTCAC--CAGTATTG-------------------------GCAGA-CTCATTGGA-ATCGTTACTC 961
|||..||.|| ||..|||| ||.|| |||.|||.| |
Sbjct 2349 CAACTTCAGTGACTGCAAAATTGATCCTGCTCCCTTCCAGCTGGTGGAGCGGACCTCTTTGCACA--------- 2413
Query 962 TAAAGGAGCTCCGGAAGGCCATCGAGGGCTCTGTCACAGCACAGGGTGTGAAAGTCCGGCCGCCCCTCGCCAGC 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2414 ------AGCTCCGGAAGGCCATCGAGGGCTCTGTCACAGCACAGGGTGTGAAAGTCCGGCCGCCCCTCGCCAGC 2481
Query 1036 TTCCGAGACAGTGCCACCAGCAGCAGTGACACGGAGACCACTGAGGTGCATGCACTCTGGGGGCCCCACTCCCG 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2482 TTCCGAGACAGTGCCACCAGCAGCAGTGACACGGAGACCACTGAGGTGCATGCACTCTGGGGGCCCCACTCCCG 2555
Query 1110 TCATGGCCTCCCCCGGGAGGGCAGCCCTTCCGACAGCGACGACAAATGCCAA 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2556 TCATGGCCTCCCCCGGGAGGGCAGCCCTTCCGACAGCGACGACAAATGCCAA 2607
