Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10771
Subject:
NM_001198866.1
Aligned Length:
3796
Identities:
532
Gaps:
3206

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGAGTACGGAGGCAAGCGCCCGGCCCCTGCGGGTTGGCTCCCGCGTGGAGGTGATTGGGAAGGGCCACCGAGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CACTGTGGCCTATGTTGGAGCCACACTCTTTGCCACTGGCAAATGGGTGGGCGTGATTCTGGATGAAGCAAAAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCAAAAATGATGGCACTGTCCAGGGAAGGAAGTATTTCACATGTGATGAAGGCCACGGCATCTTTGTACGCCAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCCCAGATCCAAGTATTTGAAGATGGAGCAGATACTACTTCCCCAGAGACTCCTGATTCTTCTGCTTCAAAGGT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCTCAAGAGAGAGGGAGCCGATGCAGCTGCAAAGACCAGCAAACTGCGGGGACTGAAGCCTAAGAAGGCACCGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CAGCCCGAAAGACCACAACTCGACGGCCCAAGCCTACTCGCCCAGCCAGCACTGGGGTGGCTGGGCCCAGTAGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TCCCTTGGCCCCTCTGGCTCAGCGTCAGCCGGGGAACTAAGCAGCAGTGAGCCCAGCACCCCAGCTCAGACTCC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCTGGCAGCACCCATCATCCCCACACCGGCCCTCACCTCTCCTGGAGCAGCACCCCCACTTCCATCTCCCTCTA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGGAAGAGGAAGGGCTGAGGGCTCAGGTACGGGACCTGGAGGAGAAGCTGGAGACCCTGCGCCTAAAACGCTCA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GAAGACAAAGCAAAGCTGAAAGAGCTGGAGAAGCACAAGATCCAGCTGGAGCAGGTGCAGGAATGGAAGAGCAA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AATGCAGGAGCAGCAGGCAGACCTGCAGCGGCGCCTCAAGGAGGCTCGGAAGGAAGCCAAGGAGGCGCTAGAGG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CAAAGGAACGCTACATGGAGGAGATGGCCGACACAGCCGACGCTATCGAGATGGCCACTCTGGACAAGGAGATG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GCTGAAGAGCGCGCTGAGTCTCTGCAGCAAGAGGTGGAGGCACTGAAGGAACGGGTAGACGAGCTCACCACAGA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CCTGGAGATTCTCAAGGCTGAAATCGAAGAGAAAGGCTCTGATGGGGCCGCATCAAGCTACCAGCTCAAGCAGC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TGGAGGAGCAGAATGCCCGCCTGAAGGATGCCCTGGTGAGGATGCGAGACCTCTCTTCCTCAGAGAAGCAGGAG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CACGTGAAGCTGCAGAAACTCATGGAAAAGAAAAACCAGGAGCTGGAGGTCGTGCGGCAGCAGCGCGAGCGTCT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TCAGGAGGAGCTGAGCCAGGCTGAGAGCACCATCGATGAGCTCAAAGAGCAGGTGGACGCCGCTCTGGGAGCCG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AGGAGATGGTGGAGATGCTGACCGACCGGAACCTGAATCTAGAGGAGAAAGTGCGGGAGTTACGGGAGACTGTG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GGGGACTTGGAAGCCATGAACGAGATGAACGATGAGCTGCAGGAGAACGCACGGGAGACGGAGCTGGAACTCCG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AGAGCAGCTGGACATGGCGGGCGCCCGAGTGAGGGAAGCGCAGAAGCGAGTGGAAGCCGCCCAGGAGACAGTCG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CCGACTACCAGCAGACCATCAAGAAGTACCGCCAGTTGACTGCCCACCTACAGGATGTCAATCGGGAGCTGACA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AACCAGCAGGAAGCGTCTGTAGAGAGGCAGCAGCAGCCGCCGCCAGAGACTTTTGATTTCAAAATCAAGTTTGC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TGAGACCAAGGCTCATGCCAAGGCCATTGAGATGGAGTTGAGACAGATGGAAGTTGCCCAGGCCAACCGGCACA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TGTCCCTGCTGACAGCCTTTATGCCTGACAGCTTCCTTCGGCCAGGTGGAGACCACGACTGTGTCCTGGTGCTG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CTGCTCATGCCCCGACTCATTTGCAAGGCAGAGCTCATCCGGAAGCAGGCCCAGGAGAAGTTTGACCTGAGCGA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GAACTGTTCGGAGCGGCCCGGGCTGCGGGGAGCTGCCGGGGAGCAGCTGAGCTTTGCTGCTGGACTGGTGTACT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CGCTGAGTCTGCTGCAGGCCACGCTGCACCGCTATGAGCATGCCCTCTCTCAGTGCAGTGTGGACGTGTATAAG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  AAGGTCGGCAGCCTGTACCCCGAGATGAGCGCCCACGAGCGCTCCTTAGATTTCCTCATTGAGCTGCTGCACAA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GGATCAGCTGGATGAGACTGTCAACGTGGAGCCCCTCACCAAGGCCATCAAGTATTACCAGCATCTGTACAGCA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TCCACCTCGCTGAACAACCCGAGGACTCCACCATGCAGCTGGCTGACCACATCAAGTTCACCCAGAGTGCCCTG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GACTGCATGGGCGTGGAGGTGGGGCGGCTGCGTGCCTTCTTGCAGGGTGGGCAGGAGGCAACAGATATTGCCCT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TCTTCTCCGAGACCTGGAAACATCATGTAGTGACACCCGTCAGTTCTGCAAGAAGATCCGAAGGCGGATGCCGG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GGACGGATGCTCCTGGGATCCCAGCAGCGCTGGCCTTTGGCTCACAGGTATCCGACACACTCCTGGACTGCAGG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AAGCACTTGACGTGGGTGGTAGCTGTTCTGCAGGAGGTGGCAGCTGCAGCCGCCCAGCTTATTGCCCCCTTGGC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  AGAGAACGAGGGGCTGCCTGTGGCTGCACTGGAGGAGCTGGCCTTCAAAGCAAGCGAGCAGATCTACGGGAGCC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  CCTCCAGCAGCCCCTATGAGTGTCTACGCCAGTCATGCACCATCCTCATCAGCACGATGAACAAGCTGGCCACA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GCCATGCAAGAAGGCGAGTATGACGCAGAGCGACCCCCGAGCAAGCCTCCTCCGGTTGAACTTCGGGCTGCAGC  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  CCTGCGTGCAGAGATCACAGATGCTGAAGGTCTGGGTTTGAAGCTTGAGGATCGAGAGACAGTTATCAAGGAGT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  TAAAGAAGTCACTCAAGATTAAGGGAGAGGAGCTGAGTGAGGCCAACGTGCGGCTCAGCCTCCTGGAGAAGAAG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  TTGGACAGCGCTGCCAAGGATGCAGACGAGCGAATCGAGAAAGTTCAGACACGGCTGGACGAGACTCAGACCCT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  GCTGCGGAAGAAGGAGAAAGACTTTGAGGAGACAATGGACGCACTCCAGGCTGACATCGACCAGCTGGAGGCAG  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  AGAAGGCAGAGCTCAAGCAGCGCCTGAACAGCCAGTCCAAGCGCACAATCGAGGGGCTCCGGGGCCCCCCTCCG  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  TCAGGCATCGCTACCCTGGTCTCTGGCATCGCTGGTGAGGAACCACAGCGAGGGGGCGCTCCTGGGCAGGCTCC  3182

Query    1  -------ATGCCAGGCCCAGGGCTGGTGAAGGACTCACCACTGCTGCTTCAGCAGATCTCTGCCATGAGGCTGC  67
                   .||||||||||.|||||||||||||||||.||||||||||||||||||||||||||.||||||||.|
Sbjct 3183  GGGCGCCTTGCCAGGCCCGGGGCTGGTGAAGGACTCCCCACTGCTGCTTCAGCAGATCTCTGCTATGAGGCTAC  3256

Query   68  ACATCTCCCAGCTCCAGCATGAGAACAGCATCCTCAAGGGAGCCCAGATGAAGGCATCCTTGGCATCCCTGCCC  141
            |||||||.||||||||||||||||||||||||||||..|||||||||||||||||.|||||||||.|.||||||
Sbjct 3257  ACATCTCTCAGCTCCAGCATGAGAACAGCATCCTCAGAGGAGCCCAGATGAAGGCGTCCTTGGCAGCTCTGCCC  3330

Query  142  CCTCTGCATGTTGCAAAGCT---------ATCCCATGAGGGCCCTGGCAGTGAGTTACC----AGCTGGAGCGC  202
            ||||||||||||||||||||         |.|||||||||||||   |.||| ||.|||    .|||||.||.|
Sbjct 3331  CCTCTGCATGTTGCAAAGCTTTCCCTCCCACCCCATGAGGGCCC---CGGTG-GTAACCTAGTGGCTGGGGCAC  3400

Query  203  TGTATCGTAAGACCAGCCAGCTGCTGGAGACATTGAATCAATTGAGCACACACACGCACGTAGTAGACATCACT  276
            ||||.||.||||||||||||||.|||||||.|.|.||.||..||||.||.|||||.|||||.||.||.||||||
Sbjct 3401  TGTACCGCAAGACCAGCCAGCTCCTGGAGAAACTAAACCAGCTGAGTACCCACACCCACGTGGTGGATATCACT  3474

Query  277  CGCACCAGCCCTGCTGCCAAGAGCCCGTCGGCCCAACTTATGGAGCAAGTGGCTCAGCTTAAGTCCCTGAGTGA  350
            ||.|.||||||.|||||||||||||||||.||.||.||||||||.||||||||||||||.||||||||||||||
Sbjct 3475  CGGAGCAGCCCAGCTGCCAAGAGCCCGTCAGCTCAGCTTATGGAACAAGTGGCTCAGCTCAAGTCCCTGAGTGA  3548

Query  351  CACCGTCGAGAAGCTCAAGGATGAGGTCCTCAAGGAGACAGTATCTCAGCGCCCTGGAGCCACAGTACCCACTG  424
            ||||.|.|||||||||||||||||||||||||||||||||||..|||||||||||||||||||.||.|||||.|
Sbjct 3549  CACCATTGAGAAGCTCAAGGATGAGGTCCTCAAGGAGACAGTGACTCAGCGCCCTGGAGCCACTGTGCCCACCG  3622

Query  425  ACTTTGCCACCTTCCCTTCATCAGCCTTCCTCAGGGCCAAGGAGGAGCAGCAGGATGACACAGTCTACATGGGC  498
            ||||||||||.|||||||||||.||||||||||||||||||||.||||||||.|||||||||||||||||||||
Sbjct 3623  ACTTTGCCACTTTCCCTTCATCTGCCTTCCTCAGGGCCAAGGAAGAGCAGCAAGATGACACAGTCTACATGGGC  3696

Query  499  AAAGTGACCTTCTCATGTGCGGCTGGTTTTGGACAGCGACACCGGCTGGTGCTGACCCAGGAGCAGCTGCACCA  572
            |||||||||||.|||||.|||||.||..|.||||||||||||||.|||||||||||||||||||||||||||||
Sbjct 3697  AAAGTGACCTTTTCATGCGCGGCAGGCCTAGGACAGCGACACCGCCTGGTGCTGACCCAGGAGCAGCTGCACCA  3770

Query  573  GCTTCACAGTCGCCTCATCTCC  594
            ||||||||||||||||||||||
Sbjct 3771  GCTTCACAGTCGCCTCATCTCC  3792

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