Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10771
- Subject:
- NM_001347310.1
- Aligned Length:
- 3445
- Identities:
- 532
- Gaps:
- 2855
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGATGAGACAGGCACCGACAGCCCGAAAGACCACAACTCGACGGCCCAAGCCTACTCGCCCAGCCAGCACTGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGTGGCTGGGCCCAGTAGCTCCCTTGGCCCCTCTGGCTCAGCGTCAGCCGGGGAACTAAGCAGCAGTGAGCCCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCACCCCAGCTCAGACTCCGCTGGCAGCACCCATCATCCCCACACCGGCCCTCACCTCTCCTGGAGCAGCACCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCACTTCCATCTCCCTCTAAGGAAGAGGAAGGGCTGAGGGCTCAGGTACGGGACCTGGAGGAGAAGCTGGAGAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCTGCGCCTAAAACGCTCAGAAGACAAAGCAAAGCTGAAAGAGCTGGAGAAGCACAAGATCCAGCTGGAGCAGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGCAGGAATGGAAGAGCAAAATGCAGGAGCAGCAGGCAGACCTGCAGCGGCGCCTCAAGGAGGCTCGGAAGGAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCCAAGGAGGCGCTAGAGGCAAAGGAACGCTACATGGAGGAGATGGCCGACACAGCCGACGCTATCGAGATGGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CACTCTGGACAAGGAGATGGCTGAAGAGCGCGCTGAGTCTCTGCAGCAAGAGGTGGAGGCACTGAAGGAACGGG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TAGACGAGCTCACCACAGACCTGGAGATTCTCAAGGCTGAAATCGAAGAGAAAGGCTCTGATGGGGCCGCATCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGCTACCAGCTCAAGCAGCTGGAGGAGCAGAATGCCCGCCTGAAGGATGCCCTGGTGAGGATGCGAGACCTCTC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TTCCTCAGAGAAGCAGGAGCACGTGAAGCTGCAGAAACTCATGGAAAAGAAAAACCAGGAGCTGGAGGTCGTGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GGCAGCAGCGCGAGCGTCTTCAGGAGGAGCTGAGCCAGGCTGAGAGCACCATCGATGAGCTCAAAGAGCAGGTG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GACGCCGCTCTGGGAGCCGAGGAGATGGTGGAGATGCTGACCGACCGGAACCTGAATCTAGAGGAGAAAGTGCG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGAGTTACGGGAGACTGTGGGGGACTTGGAAGCCATGAACGAGATGAACGATGAGCTGCAGGAGAACGCACGGG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGACGGAGCTGGAACTCCGAGAGCAGCTGGACATGGCGGGCGCCCGAGTGAGGGAAGCGCAGAAGCGAGTGGAA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GCCGCCCAGGAGACAGTCGCCGACTACCAGCAGACCATCAAGAAGTACCGCCAGTTGACTGCCCACCTACAGGA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TGTCAATCGGGAGCTGACAAACCAGCAGGAAGCGTCTGTAGAGAGGCAGCAGCAGCCGCCGCCAGAGACTTTTG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATTTCAAAATCAAGTTTGCTGAGACCAAGGCTCATGCCAAGGCCATTGAGATGGAGTTGAGACAGATGGAAGTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCCCAGGCCAACCGGCACATGTCCCTGCTGACAGCCTTTATGCCTGACAGCTTCCTTCGGCCAGGTGGAGACCA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CGACTGTGTCCTGGTGCTGCTGCTCATGCCCCGACTCATTTGCAAGGCAGAGCTCATCCGGAAGCAGGCCCAGG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AGAAGTTTGACCTGAGCGAGAACTGTTCGGAGCGGCCCGGGCTGCGGGGAGCTGCCGGGGAGCAGCTGAGCTTT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GCTGCTGGACTGGTGTACTCGCTGAGTCTGCTGCAGGCCACGCTGCACCGCTATGAGCATGCCCTCTCTCAGTG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAGTGTGGACGTGTATAAGAAGGTCGGCAGCCTGTACCCCGAGATGAGCGCCCACGAGCGCTCCTTAGATTTCC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TCATTGAGCTGCTGCACAAGGATCAGCTGGATGAGACTGTCAACGTGGAGCCCCTCACCAAGGCCATCAAGTAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TACCAGCATCTGTACAGCATCCACCTCGCTGAACAACCCGAGGACTCCACCATGCAGCTGGCTGACCACATCAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GTTCACCCAGAGTGCCCTGGACTGCATGGGCGTGGAGGTGGGGCGGCTGCGTGCCTTCTTGCAGGGTGGGCAGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AGGCAACAGATATTGCCCTTCTTCTCCGAGACCTGGAAACATCATGTAGTGACACCCGTCAGTTCTGCAAGAAG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATCCGAAGGCGGATGCCGGGGACGGATGCTCCTGGGATCCCAGCAGCGCTGGCCTTTGGCTCACAGGTATCCGA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CACACTCCTGGACTGCAGGAAGCACTTGACGTGGGTGGTAGCTGTTCTGCAGGAGGTGGCAGCTGCAGCCGCCC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AGCTTATTGCCCCCTTGGCAGAGAACGAGGGGCTGCCTGTGGCTGCACTGGAGGAGCTGGCCTTCAAAGCAAGC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GAGCAGATCTACGGGAGCCCCTCCAGCAGCCCCTATGAGTGTCTACGCCAGTCATGCACCATCCTCATCAGCAC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GATGAACAAGCTGGCCACAGCCATGCAAGAAGGCGAGTATGACGCAGAGCGACCCCCGAGCAAGCCTCCTCCGG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TTGAACTTCGGGCTGCAGCCCTGCGTGCAGAGATCACAGATGCTGAAGGTCTGGGTTTGAAGCTTGAGGATCGA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GAGACAGTTATCAAGGAGTTAAAGAAGTCACTCAAGATTAAGGGAGAGGAGCTGAGTGAGGCCAACGTGCGGCT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CAGCCTCCTGGAGAAGAAGTTGGACAGCGCTGCCAAGGATGCAGACGAGCGAATCGAGAAAGTTCAGACACGGC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TGGACGAGACTCAGACCCTGCTGCGGAAGAAGGAGAAAGACTTTGAGGAGACAATGGACGCACTCCAGGCTGAC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ATCGACCAGCTGGAGGCAGAGAAGGCAGAGCTCAAGCAGCGCCTGAACAGCCAGTCCAAGCGCACAATCGAGGG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GCTCCGGGGCCCCCCTCCGTCAGGCATCGCTACCCTGGTCTCTGGCATCGCTGGTGAGGAACCACAGCGAGGGG 2812
Query 1 --------------------------ATGCCAGGCCCAGGGCTGGTGAAGGACTCACCACTGCTGCTTCAGCAG 48
.||||||||||.|||||||||||||||||.||||||||||||||||||
Sbjct 2813 GCGCTCCTGGGCAGGCTCCGGGCGCCTTGCCAGGCCCGGGGCTGGTGAAGGACTCCCCACTGCTGCTTCAGCAG 2886
Query 49 ATCTCTGCCATGAGGCTGCACATCTCCCAGCTCCAGCATGAGAACAGCATCCTCAAGGGAGCCCAGATGAAGGC 122
||||||||.||||||||.||||||||.||||||||||||||||||||||||||||..|||||||||||||||||
Sbjct 2887 ATCTCTGCTATGAGGCTACACATCTCTCAGCTCCAGCATGAGAACAGCATCCTCAGAGGAGCCCAGATGAAGGC 2960
Query 123 ATCCTTGGCATCCCTGCCCCCTCTGCATGTTGCAAAGCT---------ATCCCATGAGGGCCCTGGCAGTGAGT 187
.|||||||||.|.|||||||||||||||||||||||||| |.||||||||||||| |.||| ||
Sbjct 2961 GTCCTTGGCAGCTCTGCCCCCTCTGCATGTTGCAAAGCTTTCCCTCCCACCCCATGAGGGCCC---CGGTG-GT 3030
Query 188 TACC----AGCTGGAGCGCTGTATCGTAAGACCAGCCAGCTGCTGGAGACATTGAATCAATTGAGCACACACAC 257
.||| .|||||.||.|||||.||.||||||||||||||.|||||||.|.|.||.||..||||.||.|||||
Sbjct 3031 AACCTAGTGGCTGGGGCACTGTACCGCAAGACCAGCCAGCTCCTGGAGAAACTAAACCAGCTGAGTACCCACAC 3104
Query 258 GCACGTAGTAGACATCACTCGCACCAGCCCTGCTGCCAAGAGCCCGTCGGCCCAACTTATGGAGCAAGTGGCTC 331
.|||||.||.||.||||||||.|.||||||.|||||||||||||||||.||.||.||||||||.||||||||||
Sbjct 3105 CCACGTGGTGGATATCACTCGGAGCAGCCCAGCTGCCAAGAGCCCGTCAGCTCAGCTTATGGAACAAGTGGCTC 3178
Query 332 AGCTTAAGTCCCTGAGTGACACCGTCGAGAAGCTCAAGGATGAGGTCCTCAAGGAGACAGTATCTCAGCGCCCT 405
||||.||||||||||||||||||.|.|||||||||||||||||||||||||||||||||||..|||||||||||
Sbjct 3179 AGCTCAAGTCCCTGAGTGACACCATTGAGAAGCTCAAGGATGAGGTCCTCAAGGAGACAGTGACTCAGCGCCCT 3252
Query 406 GGAGCCACAGTACCCACTGACTTTGCCACCTTCCCTTCATCAGCCTTCCTCAGGGCCAAGGAGGAGCAGCAGGA 479
||||||||.||.|||||.|||||||||||.|||||||||||.||||||||||||||||||||.||||||||.||
Sbjct 3253 GGAGCCACTGTGCCCACCGACTTTGCCACTTTCCCTTCATCTGCCTTCCTCAGGGCCAAGGAAGAGCAGCAAGA 3326
Query 480 TGACACAGTCTACATGGGCAAAGTGACCTTCTCATGTGCGGCTGGTTTTGGACAGCGACACCGGCTGGTGCTGA 553
||||||||||||||||||||||||||||||.|||||.|||||.||..|.||||||||||||||.||||||||||
Sbjct 3327 TGACACAGTCTACATGGGCAAAGTGACCTTTTCATGCGCGGCAGGCCTAGGACAGCGACACCGCCTGGTGCTGA 3400
Query 554 CCCAGGAGCAGCTGCACCAGCTTCACAGTCGCCTCATCTCC 594
|||||||||||||||||||||||||||||||||||||||||
Sbjct 3401 CCCAGGAGCAGCTGCACCAGCTTCACAGTCGCCTCATCTCC 3441
