Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
NR_108047.1
Aligned Length:
5659
Identities:
215
Gaps:
5411

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTTTCCGGCGTTGGAGTTGCAGCTTCACCCTCGCAGATTCGGCTTAGCGAGCGAGTCGGTGCTTCCGCGGATCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AAATTATTAGCCGTTTTATTAGAGCCCATTAAACGTTGCATAAACATGGTTCAGAGCTGCCTGGGAGAAGAAAA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCCAAAGGATGCCACCCTCTCGATTTATCCCACCCTCGGGAGTCTGAAAGCCGACGCCAGGAGAAATCCCGCGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGGCCGCCCGGGATCCTGGTAGAGGCGACGCTGTGTGCGTTTATGGAGCGCTTGCGGTGCGTGGCACTAGGCTG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGTGTGGTGGGTGCTGCCGAAAAAAGGGTTCCTCCCATCCATTTGCACGTCACCCTTCCCACCTCCTGCCCAGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGGACAGAAGTGAGGACATTCATCGGCCGCATTTTACTAATGGCAAGGAGATAGCGACTGAAGGGCAAGAACCT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGGGTTTCCTGTCTTTGATATTTCTCATCTTTGAGAGAAGCCAGTATTTGGAGATGTTTACCCTGCTGTTTTGG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AAGTTGTCCACTTTACTTGATATTGGGACATATCAAGAGACCACTATATGGTCTTGAGTGTAAACTACAGGTAT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ATTCCTTCCTGCCATCATCGTGTAGCAATAACGCTATTTCCTCCTGATGATTGGATTCATTTACCCCAACTAAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ATGGTGACTCTTCCTTGCCTGCTGGTCTCCTAGCACAAGGACCTTGAACCGGGAAACCTCAGCAAGTTAAAGTT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TAAAGGATCTATTATTGTGTCTCTTGATGAAAAGGTTCCTCTCTTGGGAATCAGGACTTCTAATTCACAAAGTT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCGGGGATGAGAAGTCCAAACTCCCCACTTGGGTCACTGGGAGTGAGAGTATGTGGTTATATTAATTTCCTATC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ACTGCTATGACACTACGAACTTAGTGGTTTCAAACAACACAAATTTATTTTCTTACAGTTCTGGAAGCCTAAAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TCAAGATATCAACTGGACTGTTTTTCCTGAAGTCTTCAAGAAAAAGTCTGTTTCCTTGCCTTTTTCAATTTCTA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GAGGCTACCTACATTTCTTGGCTCATGGCCCCTTACTCATATCACCCCATCCTCCTGCTTAAGTCATTGCATCT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ACTAGGCAAATCTGCCTCTCTCTTGTAAGAATCTTTATGATTATATTGGGCCTATTGGATAGTCCAGGATAATC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TCTGTATCTTGAGATCATTAACTTAGTCATATCCACAAAGTCTCTTTTATCTTGAAGGTAAAATATTCATAGAA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TCCAGGATTAGGATCTGAACATATTTGGGGGCCATTATTCAGCCTACTACACAGTAGGAATTCTATTTATATCC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TTTCATTCCCAAACATGCATGTTATGTATATATGAGACACAGCACCATAAAATGAGTGTTGATTTAGAGTATAT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ACTGTACCCTGGTGGACAAGGTCATTCCATTTTCACAGGCTATTATCTTCAAGCTTTTGCTTCAGTTTCACCTT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CAAAAGGGTTTTTCATCATTCCATCAGACCCGCATTTTCTCGGTTATATAGTATGTGATAGGACTAGTGGATCT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CATGGTTATGTACCTGCTGATACACCTCCTTTGCTGTAAAGTGCATCCCTAAATCAAAGGCAATATTACACAGG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATACATGTTGATGGATCAAATACCTGTAAACCTGTGAGTAGTAGAGCTGGCCAACAACTTATAGGCAAGGAAGT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CAAACTCATACATGCAGATGGGCAGTTTCTAGTCAAGGAGAATCACTGCCCATTCTAGGATGGAAGGAATCCAA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CATAAATCAATTTGCTGCCCAAGTAGCTGTTTGGTATCCTTGAGGGTTGGTGCTGTATCAGGAACTTGGTGTTT  1850

Query    1  ---------------------------------------------------------ATGGAGTCTCGCTCTGT  17
                                                                     |.|||||.||.|| .||
Sbjct 1851  AACACTGGGGAGTGGCTATTTTGTTGTTGTTGTTGTTGTTGTTTTGTTTTGTTTGAGACGGAGTTTCACT-GGT  1923

Query   18  TGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCT  91
            |||||||||||||||||.|||||...||||||||||||||||||||||||||||..||||||||.||||||.||
Sbjct 1924  TGCCCAGGCTGGAGTGCCGTGGCGCCATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGGGATTCTCCT  1997

Query   92  GCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCACCACCACGCCCGGCTAATTTTGTATTTTTGGTCGAG  165
            |||||||||||..||||||||||||.||.||.|||||.||||||||.||.|||||||||||||||||.||.|||
Sbjct 1998  GCCTCAGCCTCGTGAGTAGCTGGGATTACAGGCATGCGCCACCACGGCCAGCTAATTTTGTATTTTTAGTAGAG  2071

Query  166  ACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCC-ACCACCTCGGCCTCCCA  238
            |||||||||..|||||||.|||||||||||||..||||||.|||||||.||||||| .|||||||.||||||||
Sbjct 2072  ACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCAGACCTCAGGTGATCCGCCCACCTCAGCCTCCCA  2145

Query  239  AAGTGTTGAGA---------------------------------------------------------------  249
            |||||.||.||                                                               
Sbjct 2146  AAGTGCTGGGATTACAGACAGGAGCCACCGCGCCCAGCCTGGGGAGTGGCTATTGGATAAGTGGAGGCTATCTA  2219

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2220  TTGGCTTCTTGCTCACTTGCATTCCTGCAAGATGACTACTTTGTCATAAGCCCCCTGTGCCATTCCTGGGGGCG  2293

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2294  GAGGGAGGGGGCGGTGGAGCCGATGGTTGTAGCTGCTGAAGTTTACTGGCTAAATCTGTCTACTTGGTTATTTA  2367

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2368  ATGCTGCTTACATGTTGGATTGTCTCTGGCAGATAAAGATTGTGTTATACAATACAAAAAGCCCTCCTTATGTG  2441

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2442  CCATATCTGATATATTTCTCCTCTGCTTCTCCAGACTTCTTGTCCCTGATATACCAGTCTTATTCCAGACCCCT  2515

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2516  GATCAACTAGCCAACTTATTTGCCATGAAAATATGTTCTTAGTTCAAGACACTTTCTTTCCACACACAGTTGAT  2589

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2590  GACCAGGAATACTGCCCCACATTATGCCTTTTGGGAGGGTTCTCCTTACTGCTGTCTTTTAAGGCCAGTCCTGT  2663

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2664  GTGGGGCTGTAGGGCAGTAGCAGTCCATTTTTGTTTTGAACCTATATTCCAAGAAACCTCAGTGAATTCAGCTC  2737

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2738  AGGCTTTTTTGTCCTCCATAAGCTAGACATGAGAGCCTCCCAAGTGGCCATAATTGTGAGCTGAGGAAGGGACA  2811

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2812  TTGGTAAAGAATCAGATATGACATGGGAGCCTGACCACCTGCCTTTGCCCAGCTCATGATGGGCCTCTCTGGCT  2885

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2886  ACATGGTCACTTGATGTCCATAATCAGTTCTTACCAAGGCACATTAGCATGGATAGAGTTGTTTTTGGGATTTT  2959

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2960  GCACTGCAGATGGCCCAGCCTTGCCACAGAATGCCAGGAGTCGACCTTGTGATTCTCCCATTGGAGCTTGCCTT  3033

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3034  CAACTTTCATGGCTTCTTATCACATTTACTCTTGTCCCATAGAATATCCTGAATTGGTCCATGCAACAGGGCTA  3107

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3108  AATACACCATACCTGCTAGAGAACTTTTACATGCTATGGATCCCACTGAAAACTGGCAGATTTCTATCTCACCC  3181

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3182  AGTTTACGAGTCAGAACAGTACTGCCAACTTCTGAATTCCCACAGAAGCCTACACAGCTTGGTGTGCTTCCCTG  3255

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3256  GTGGCAGAATAATTTTGGTGAAATGAGTGGGTGAGATGCAATAATTTGTCCTTTACTGTGAAGGGGATATCTTG  3329

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3330  GCATTCAAGCAGCCTACTGGGCCCTAAAAGTTTCACTGAGGTAACAGCTTGCTGGGTCTTAAGGATTATTTCCC  3403

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3404  ATCCTCCAGTGTACAGTATGCTAGCTGCTTATTATTCACCTTATCCAGCTAGCATGATGTCATCAATGTGGTAG  3477

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3478  GTCATTGTGACATTATGTGGGATGTTTAGATGGTCTAGATCTCTTCGGATTATGACGCAGTGTGGAAGAGTTAA  3551

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3552  CATAACCCTAAGCCAATACTATAAATGGGTACTGCTGTCCTATATAAACACAAACTTAATTCTTGTCCAGCACT  3625

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3626  CTCAGGACCCAGTTCCATACACATGCTCATGGTTCCTGTTGGTACATGTTGGTTAGATCCTGCATCTCTTTGGT  3699

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3700  CATATAAGCCCATTTGGAATTGAAAGTAGACACACAGAATGAGGGCAAAACACCTGCAGAACAGCTGCTTCATC  3773

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3774  ATGGTGGGCTTTTTTCATATTAGGTTTTGTTACCTTTGAGTTTTTAAATTATGTGTAAAGCTTCGATTAAAAAA  3847

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3848  ATAAAAATTATTAAAAAGAAACTGAGACAGTCTATCCACCTATCTCTATTTACCCAGTGCTGTTGTTGTGTTAC  3921

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3922  ATAAAATTCAATTTTAGCTTCATGTTCATGCAATATTTTCGTTTACCCTTGATTCAACCTTGACCTTTAAAAAG  3995

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3996  CCAAAAAGACAAATACCTATTTTGACACTGGTTCTGATCTCTCTGAAATTCTGTGTGACCAATGGTCAAGTAAC  4069

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4070  CTTGCAGGTTATTTATCATGTCTAATCTGAAAAAAGTCATTGTATTTACTAATATTTTAATATTCACCTTATAG  4143

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4144  GTAAGCATTCTAAACATGATTGTGGCAAGAAATTCTTATATGCTTTACATGTTGAAATTCTGTGTCAAATGAAG  4217

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4218  TACATATGTATATTATTGCAAGAGTGAATTTCTTCAGTAATGATTGTGACAGCTAGTAAATTTAAGTAGAAAGT  4291

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4292  AATTATAAACTTCCAAATACTTTTTTTAAATGGGCAAAATATATGAAACAATGGCCCTGAAGGCATTGGACATA  4365

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4366  GGCAGTGAAGGATAGTAATCCATGAGAGATGGAATGCAAACAAGGTGAGCAATACAATTGCTCCAACTTGCTGC  4439

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4440  CTGAAGAAAGGCTTTGGCATGGGGAGAGGGAACCCAGAAGACTCTGTGAGGTGAGGAGATATAAGTGGGAGTCC  4513

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4514  TGAGAGCCCAAGGCAACTAGAGTTCACAGGGTAGAATACTAGAGAGGACAGAGTGACACAGAGAGAACTCCAGA  4587

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4588  GATCTGCTGACCATTCTCCTGAAGTATTAAGCTAAATAATGATTAGTACATGCATGAGAGGAAATAACCAAAGG  4661

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4662  CTTGGCAAAGAACCATCAGAAAGGATTAAAGAAAACAATACTCAAAGCTCACACAGGATGGTGAATGATTCCTG  4735

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4736  ATCCCGTCAGCAAGAGTGGAAAAGATCCTAATTCACAAGGCACCAGTTAGAGTACTAAGAAAGGTCTTGCTTCA  4809

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4810  ATAGCGGGAAAAATTAACCCTCGACTAAATGCTCTAGAATAACCTAACAAAGCTTAAAAGAGAGACCCAAAAAC  4883

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4884  ATTCAAACTGTGTCCAAATAACTTAATCATACTCCAGAAGAAAGTTCAAACTGTTTTAGGGATATGAAAATAAT  4957

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4958  CTACAAAGTAAAATTCACAATGGCTGGCATCCAATCAAAAATTACCAGGCATGCAACAGAAAAATACAACCCAT  5031

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5032  AATAAGAAAAATAAAACATTCTGGGCTAGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAG  5105

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5106  GTAGGTGGATGACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGCGAAACCCCGTCTCTACTAAAAA  5179

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5180  TACAAAAATTAGCAGGGAGTGGTGGTGCTCACCTGTAGTCCCAGCTATTCAGGAGGCTAAGGCAGGAGAATTGC  5253

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5254  TTGAACCCAGGAGGCAGAGGTTGCAGTGAGATTGTGCCAATGCACTCCAGCCTGGGCAACAGAGCAAGACTCCA  5327

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5328  TCTCAAAACAAACAAAAAATAAAACATTCTGTCAAAACTGACTCAGAAATTACAGATGATGAAGATTATTAGAC  5401

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5402  AAGGACATTAAAACAGTTATTATAATTATATTCCATGTATTCAAGAAACCAGAGGAAAGACTGAAGATATTACA  5475

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5476  GACAATGAAGGTATAAAAAGACCCGTATCAAACTTCTAGAGATGAAAACTCCAATGTCTGAGATGAAAAATATG  5549

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5550  TTAGATGAGATTAATGGCAGATTAGATATTGCAGAAAGAAAGATCAGTGAACTTGAAGATGCAGCAGTAGAACC  5623

Query  250  -----------------------------------  249
                                               
Sbjct 5624  TCCCTGAAACAGAGAGAAAAAAAAAAAAAAAAAAA  5658

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