Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10792
- Subject:
- NR_108047.1
- Aligned Length:
- 5659
- Identities:
- 215
- Gaps:
- 5411
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTTTCCGGCGTTGGAGTTGCAGCTTCACCCTCGCAGATTCGGCTTAGCGAGCGAGTCGGTGCTTCCGCGGATCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAATTATTAGCCGTTTTATTAGAGCCCATTAAACGTTGCATAAACATGGTTCAGAGCTGCCTGGGAGAAGAAAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCAAAGGATGCCACCCTCTCGATTTATCCCACCCTCGGGAGTCTGAAAGCCGACGCCAGGAGAAATCCCGCGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGGCCGCCCGGGATCCTGGTAGAGGCGACGCTGTGTGCGTTTATGGAGCGCTTGCGGTGCGTGGCACTAGGCTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGTGTGGTGGGTGCTGCCGAAAAAAGGGTTCCTCCCATCCATTTGCACGTCACCCTTCCCACCTCCTGCCCAGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGGACAGAAGTGAGGACATTCATCGGCCGCATTTTACTAATGGCAAGGAGATAGCGACTGAAGGGCAAGAACCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGGGTTTCCTGTCTTTGATATTTCTCATCTTTGAGAGAAGCCAGTATTTGGAGATGTTTACCCTGCTGTTTTGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAGTTGTCCACTTTACTTGATATTGGGACATATCAAGAGACCACTATATGGTCTTGAGTGTAAACTACAGGTAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ATTCCTTCCTGCCATCATCGTGTAGCAATAACGCTATTTCCTCCTGATGATTGGATTCATTTACCCCAACTAAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATGGTGACTCTTCCTTGCCTGCTGGTCTCCTAGCACAAGGACCTTGAACCGGGAAACCTCAGCAAGTTAAAGTT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TAAAGGATCTATTATTGTGTCTCTTGATGAAAAGGTTCCTCTCTTGGGAATCAGGACTTCTAATTCACAAAGTT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCGGGGATGAGAAGTCCAAACTCCCCACTTGGGTCACTGGGAGTGAGAGTATGTGGTTATATTAATTTCCTATC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ACTGCTATGACACTACGAACTTAGTGGTTTCAAACAACACAAATTTATTTTCTTACAGTTCTGGAAGCCTAAAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCAAGATATCAACTGGACTGTTTTTCCTGAAGTCTTCAAGAAAAAGTCTGTTTCCTTGCCTTTTTCAATTTCTA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GAGGCTACCTACATTTCTTGGCTCATGGCCCCTTACTCATATCACCCCATCCTCCTGCTTAAGTCATTGCATCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ACTAGGCAAATCTGCCTCTCTCTTGTAAGAATCTTTATGATTATATTGGGCCTATTGGATAGTCCAGGATAATC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCTGTATCTTGAGATCATTAACTTAGTCATATCCACAAAGTCTCTTTTATCTTGAAGGTAAAATATTCATAGAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TCCAGGATTAGGATCTGAACATATTTGGGGGCCATTATTCAGCCTACTACACAGTAGGAATTCTATTTATATCC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTTCATTCCCAAACATGCATGTTATGTATATATGAGACACAGCACCATAAAATGAGTGTTGATTTAGAGTATAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ACTGTACCCTGGTGGACAAGGTCATTCCATTTTCACAGGCTATTATCTTCAAGCTTTTGCTTCAGTTTCACCTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CAAAAGGGTTTTTCATCATTCCATCAGACCCGCATTTTCTCGGTTATATAGTATGTGATAGGACTAGTGGATCT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CATGGTTATGTACCTGCTGATACACCTCCTTTGCTGTAAAGTGCATCCCTAAATCAAAGGCAATATTACACAGG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATACATGTTGATGGATCAAATACCTGTAAACCTGTGAGTAGTAGAGCTGGCCAACAACTTATAGGCAAGGAAGT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CAAACTCATACATGCAGATGGGCAGTTTCTAGTCAAGGAGAATCACTGCCCATTCTAGGATGGAAGGAATCCAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CATAAATCAATTTGCTGCCCAAGTAGCTGTTTGGTATCCTTGAGGGTTGGTGCTGTATCAGGAACTTGGTGTTT 1850
Query 1 ---------------------------------------------------------ATGGAGTCTCGCTCTGT 17
|.|||||.||.|| .||
Sbjct 1851 AACACTGGGGAGTGGCTATTTTGTTGTTGTTGTTGTTGTTGTTTTGTTTTGTTTGAGACGGAGTTTCACT-GGT 1923
Query 18 TGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCT 91
|||||||||||||||||.|||||...||||||||||||||||||||||||||||..||||||||.||||||.||
Sbjct 1924 TGCCCAGGCTGGAGTGCCGTGGCGCCATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGGGATTCTCCT 1997
Query 92 GCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCACCACCACGCCCGGCTAATTTTGTATTTTTGGTCGAG 165
|||||||||||..||||||||||||.||.||.|||||.||||||||.||.|||||||||||||||||.||.|||
Sbjct 1998 GCCTCAGCCTCGTGAGTAGCTGGGATTACAGGCATGCGCCACCACGGCCAGCTAATTTTGTATTTTTAGTAGAG 2071
Query 166 ACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCC-ACCACCTCGGCCTCCCA 238
|||||||||..|||||||.|||||||||||||..||||||.|||||||.||||||| .|||||||.||||||||
Sbjct 2072 ACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCAGACCTCAGGTGATCCGCCCACCTCAGCCTCCCA 2145
Query 239 AAGTGTTGAGA--------------------------------------------------------------- 249
|||||.||.||
Sbjct 2146 AAGTGCTGGGATTACAGACAGGAGCCACCGCGCCCAGCCTGGGGAGTGGCTATTGGATAAGTGGAGGCTATCTA 2219
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2220 TTGGCTTCTTGCTCACTTGCATTCCTGCAAGATGACTACTTTGTCATAAGCCCCCTGTGCCATTCCTGGGGGCG 2293
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2294 GAGGGAGGGGGCGGTGGAGCCGATGGTTGTAGCTGCTGAAGTTTACTGGCTAAATCTGTCTACTTGGTTATTTA 2367
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2368 ATGCTGCTTACATGTTGGATTGTCTCTGGCAGATAAAGATTGTGTTATACAATACAAAAAGCCCTCCTTATGTG 2441
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2442 CCATATCTGATATATTTCTCCTCTGCTTCTCCAGACTTCTTGTCCCTGATATACCAGTCTTATTCCAGACCCCT 2515
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2516 GATCAACTAGCCAACTTATTTGCCATGAAAATATGTTCTTAGTTCAAGACACTTTCTTTCCACACACAGTTGAT 2589
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2590 GACCAGGAATACTGCCCCACATTATGCCTTTTGGGAGGGTTCTCCTTACTGCTGTCTTTTAAGGCCAGTCCTGT 2663
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2664 GTGGGGCTGTAGGGCAGTAGCAGTCCATTTTTGTTTTGAACCTATATTCCAAGAAACCTCAGTGAATTCAGCTC 2737
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2738 AGGCTTTTTTGTCCTCCATAAGCTAGACATGAGAGCCTCCCAAGTGGCCATAATTGTGAGCTGAGGAAGGGACA 2811
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2812 TTGGTAAAGAATCAGATATGACATGGGAGCCTGACCACCTGCCTTTGCCCAGCTCATGATGGGCCTCTCTGGCT 2885
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2886 ACATGGTCACTTGATGTCCATAATCAGTTCTTACCAAGGCACATTAGCATGGATAGAGTTGTTTTTGGGATTTT 2959
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2960 GCACTGCAGATGGCCCAGCCTTGCCACAGAATGCCAGGAGTCGACCTTGTGATTCTCCCATTGGAGCTTGCCTT 3033
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3034 CAACTTTCATGGCTTCTTATCACATTTACTCTTGTCCCATAGAATATCCTGAATTGGTCCATGCAACAGGGCTA 3107
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3108 AATACACCATACCTGCTAGAGAACTTTTACATGCTATGGATCCCACTGAAAACTGGCAGATTTCTATCTCACCC 3181
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3182 AGTTTACGAGTCAGAACAGTACTGCCAACTTCTGAATTCCCACAGAAGCCTACACAGCTTGGTGTGCTTCCCTG 3255
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3256 GTGGCAGAATAATTTTGGTGAAATGAGTGGGTGAGATGCAATAATTTGTCCTTTACTGTGAAGGGGATATCTTG 3329
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3330 GCATTCAAGCAGCCTACTGGGCCCTAAAAGTTTCACTGAGGTAACAGCTTGCTGGGTCTTAAGGATTATTTCCC 3403
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3404 ATCCTCCAGTGTACAGTATGCTAGCTGCTTATTATTCACCTTATCCAGCTAGCATGATGTCATCAATGTGGTAG 3477
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3478 GTCATTGTGACATTATGTGGGATGTTTAGATGGTCTAGATCTCTTCGGATTATGACGCAGTGTGGAAGAGTTAA 3551
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3552 CATAACCCTAAGCCAATACTATAAATGGGTACTGCTGTCCTATATAAACACAAACTTAATTCTTGTCCAGCACT 3625
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3626 CTCAGGACCCAGTTCCATACACATGCTCATGGTTCCTGTTGGTACATGTTGGTTAGATCCTGCATCTCTTTGGT 3699
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3700 CATATAAGCCCATTTGGAATTGAAAGTAGACACACAGAATGAGGGCAAAACACCTGCAGAACAGCTGCTTCATC 3773
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3774 ATGGTGGGCTTTTTTCATATTAGGTTTTGTTACCTTTGAGTTTTTAAATTATGTGTAAAGCTTCGATTAAAAAA 3847
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3848 ATAAAAATTATTAAAAAGAAACTGAGACAGTCTATCCACCTATCTCTATTTACCCAGTGCTGTTGTTGTGTTAC 3921
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3922 ATAAAATTCAATTTTAGCTTCATGTTCATGCAATATTTTCGTTTACCCTTGATTCAACCTTGACCTTTAAAAAG 3995
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3996 CCAAAAAGACAAATACCTATTTTGACACTGGTTCTGATCTCTCTGAAATTCTGTGTGACCAATGGTCAAGTAAC 4069
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4070 CTTGCAGGTTATTTATCATGTCTAATCTGAAAAAAGTCATTGTATTTACTAATATTTTAATATTCACCTTATAG 4143
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4144 GTAAGCATTCTAAACATGATTGTGGCAAGAAATTCTTATATGCTTTACATGTTGAAATTCTGTGTCAAATGAAG 4217
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4218 TACATATGTATATTATTGCAAGAGTGAATTTCTTCAGTAATGATTGTGACAGCTAGTAAATTTAAGTAGAAAGT 4291
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4292 AATTATAAACTTCCAAATACTTTTTTTAAATGGGCAAAATATATGAAACAATGGCCCTGAAGGCATTGGACATA 4365
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4366 GGCAGTGAAGGATAGTAATCCATGAGAGATGGAATGCAAACAAGGTGAGCAATACAATTGCTCCAACTTGCTGC 4439
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4440 CTGAAGAAAGGCTTTGGCATGGGGAGAGGGAACCCAGAAGACTCTGTGAGGTGAGGAGATATAAGTGGGAGTCC 4513
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4514 TGAGAGCCCAAGGCAACTAGAGTTCACAGGGTAGAATACTAGAGAGGACAGAGTGACACAGAGAGAACTCCAGA 4587
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4588 GATCTGCTGACCATTCTCCTGAAGTATTAAGCTAAATAATGATTAGTACATGCATGAGAGGAAATAACCAAAGG 4661
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4662 CTTGGCAAAGAACCATCAGAAAGGATTAAAGAAAACAATACTCAAAGCTCACACAGGATGGTGAATGATTCCTG 4735
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4736 ATCCCGTCAGCAAGAGTGGAAAAGATCCTAATTCACAAGGCACCAGTTAGAGTACTAAGAAAGGTCTTGCTTCA 4809
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4810 ATAGCGGGAAAAATTAACCCTCGACTAAATGCTCTAGAATAACCTAACAAAGCTTAAAAGAGAGACCCAAAAAC 4883
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4884 ATTCAAACTGTGTCCAAATAACTTAATCATACTCCAGAAGAAAGTTCAAACTGTTTTAGGGATATGAAAATAAT 4957
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4958 CTACAAAGTAAAATTCACAATGGCTGGCATCCAATCAAAAATTACCAGGCATGCAACAGAAAAATACAACCCAT 5031
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5032 AATAAGAAAAATAAAACATTCTGGGCTAGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAG 5105
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5106 GTAGGTGGATGACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGCGAAACCCCGTCTCTACTAAAAA 5179
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5180 TACAAAAATTAGCAGGGAGTGGTGGTGCTCACCTGTAGTCCCAGCTATTCAGGAGGCTAAGGCAGGAGAATTGC 5253
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5254 TTGAACCCAGGAGGCAGAGGTTGCAGTGAGATTGTGCCAATGCACTCCAGCCTGGGCAACAGAGCAAGACTCCA 5327
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5328 TCTCAAAACAAACAAAAAATAAAACATTCTGTCAAAACTGACTCAGAAATTACAGATGATGAAGATTATTAGAC 5401
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5402 AAGGACATTAAAACAGTTATTATAATTATATTCCATGTATTCAAGAAACCAGAGGAAAGACTGAAGATATTACA 5475
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5476 GACAATGAAGGTATAAAAAGACCCGTATCAAACTTCTAGAGATGAAAACTCCAATGTCTGAGATGAAAAATATG 5549
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5550 TTAGATGAGATTAATGGCAGATTAGATATTGCAGAAAGAAAGATCAGTGAACTTGAAGATGCAGCAGTAGAACC 5623
Query 250 ----------------------------------- 249
Sbjct 5624 TCCCTGAAACAGAGAGAAAAAAAAAAAAAAAAAAA 5658
