Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10792
- Subject:
- NR_148047.2
- Aligned Length:
- 6908
- Identities:
- 218
- Gaps:
- 6661
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGGAGAGATGCGAAATCAGCGGTAGCAGGTGGCGCAGAAGGGAGAGGGGAGCGACCCTGGGGACCGACTCTGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GACCCTCGCCGAAGAGGTAGGAAACGGGGGACTGCACGTTCCTGAGGCCACTTCACACTTATTGAGCAAAACGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAAAATAACTCTAAAATCTGGACATGATATACAAAGTGACTGCCTAAAGGAGCTGAAGAGAGGACATAAGTGGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCGCCTCTGCTGTTGCATGTTGGCTTGGAGAACAGAAGATGAGGAGCCAAATAAGCAAGTCCTTCAGCCCCAGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTTCTAGCACGGGGCTGCATGTAGGCTATGCATTCTGGGGAGTGAGGAGATCATGAATGCTGAAAATAAATGAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGAATCCAGAAAAGCAAGAGTCAAAGAAGGCATCTGCAGGCCAAATCTCTGATCAACCCCTGACCCACATACAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACAAAATACACTCAAAGCAGCTCAGCTAAAGACAAAGATCTGCACTCAGAGTAGAGCTGCCTCCCCAGAAACAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGCTCGCAGTTCAGGCCCAGCAAGAAAATTACCTGCAAAACAAAGGAAAAACAACACTCATCAGAGAAAAAGAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CAGAATCTGGAATCTTCACAACCTAGCATTCATCATATCCAAGATTGAAACCCAAATTATGGGACATATTTAAA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AACCAGGAAAATGGAACGTAGTCTTAAGAGAAAAGTCAATCAAATCTGACCTGGAGATGAATAATATATTGAAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTAAAAGGCAAGGGTTTTAATTTTTGTTTTCTTGTTTTTTTTCTGTTTGTTTGTTTGTTTTTGTTTTTGTTTT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTGAGATGGAATCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAGCCTCTGCCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCTGGGTTCAAGGAATTCTCCTGTCTCAGCCTTCCGAGTAGCTGGGACTACAGGCGCACGCCACCACACCCAGC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TAATTTTTGTGTTTTTAGTAGAGACAGGGTTTCACCATATTGGTCAGGCTGGTCTTAAACTCCTGACCTCAGGT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GATCCACCTGCCTCGGCCTCCCAAAGTGCTGGCATTACAGGCATGAGCCACCGCACCCAGCCTTGTTTTCTGGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GTTTTGTTGAGATGAGGTCTCACTCTGTCACACAGGCTGGAGTGTAGTGGTGCGATCCCAGCTCACTGCAGCTT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TAAACTCCTGGGCTCAAGCAATCCTTTTGCCTCAGCTAGCATGCTCAGTTAATTTTTAAATATTTTTTGTAGAC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATGGGGTCTTGCTATGTTGCCTAGGCTGGTCTTAAACTCCTGGCTTCAAGCAATCCTTCCACCTTGGCCTCCCA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AAGTGGTAGGATTATAGGTGTAAGCTCTCCTGCCCAGCCGGCAAGGGCTTGAAAGTGTTATGTTATTTTATAGT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTTAGGAGGTTTTGTAGCTCTCTATGATGAAGTTTAAAAATTAAGAAAAAAAGCTTGTTTTTGATTAATCGAAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TCTCAGCACAGAAATGGGACATTTCATCAGAGAAATAGATACAATGAAGAAGAGCCAAATGGAAAGCCCCCTTT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTTGGTTGCTCTTTTTCTGCTTTCAAGGTTTATATTAGCTTGACTTAGATGTGCCTTGGAGTGGACTTCGTTAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GTCCCTTCTGCTTAGTGTTTGTCTAATATCTTGAATCTGCAAATCTCTGACTTTCATTACAGCTGGGAAGTGTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TGGTTATTATTTCTTTAAATATTTTTTCTACTTGAGTTTCTTCTCTCCCTCTGAGATTTCAATTACATGTATGT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTGTTTGATATCATCTAACAAGTCTCTGAGATTTTGTTCATTATGTTCTAAGTCTTTTTCCACTCTGTTACTCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTTTGAGTAATTTTGATTGATCTGTCTTAAAATTTACTCTTTCCTTTAACATGTCCACTTGGCTGTTAACTCCA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TCTGGTGAATTTTCTACTTAAGAAATTATACTTTTCAGCTGTAGAATTTACATGAAGAAGTACATTATCAACTG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TAAATGGGCCATGAAAAGTTAAGGTTGAATTTTGTAATTTATAAATCAACTATTAAACAGTGCAGAATAGCTGT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AAAGCATCAGGAAAATTAAAATAGAATATATCTTAAAATATTAAGTAATTTTTAAAGGCGGGAAATAAGAAATG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AAGAAACAAATGTCAGAGGAGACAAATAGAAAACAAAATAAAACAAAAATGATAGACTCATACCCAACCATTTC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AAAAATTACATTGAACATTTATGAGCTAAACACTCCAATTAAAAGACAGAGATTAATAATTGTTTTTAAATGGA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TACAAAAACAATTATAACATCTCACCAAAGAAGATACACAGATGCCAAAAAATTTGAAAAGCTGTTTAATAGTA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TATGTTATTAGGTAATTACAAATTAAAACAACAATGAGATACCACTACACATCTACTAGAATAGCCAAAATTCA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AAATGCTAACAACACCAAATGCTGGTAAGGATGTGGAACAACAGAAACTGTCATTCATTGTTGATGGGAATGCA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AAATGGTTTGGCCACTTTGAAAGACAGTTTTGACAGTTTCTTGCAAAACGAAACATACTTTTACCATATGATTC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AACAATCTTACTCCTGGGTATTTACCCAAATGAGCTGAAAACTTATGTCCACACAAAACCCTGCACATGGATGT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTATAGCAACTTTATTCATAATTGCCAAAAGCTGGAAGCAATCAAGATGTCCTTCAGTAGGCAAATGGATAAAC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CGTGATATATCCAGACAATGGAATATTATTCAGTGTTAAAAAGAAATGAGCTGTCAAGCCATGAAGACATGGAG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GAATGTTAAATGCATATTACTAACTGAAAAAAGCCAATTTGAAAGGGCTGTGTACTGGATGGGTCAAACTATAC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GACATTCTGGAAAAGGCAAAACCATGGAGACAAAAAGATCAGTAGTTGCCAAGGGTTGGGCAGAGGCAAGGATG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AATAGATGAAACATAGAAGATTTTTAAAGGAGTGTAACTATTCTATATGATACTGTCATGGTGGCTATATGTAC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 ATAAATACATTAGACATTTGTCAAAACTCATAGAATGTATAATACCAAGAGCAAACTCTAATGTAAACTACGGA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CTTTGGATAATAATGATACATCAGTGTAGGTTCATTGATTGTAGCAAATGCACCACTCTGGTATGGGATGTTGA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TAGTGGGGAGGCCATATGTGTAGGGGTAGGGGGTGTGTGGGAACTGTCTGTACTTTCATCTCAATTTAGCTGTG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 AATCTAAAACTGCTCTAAAAAAATAAAATCCATTTTTTAAAAACCTAAATATAAACTATGTGCAAAGACATACT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TTCAATATAAAGACAGAAGGAAACCAAATATAGATGGATAGAAAAAGATATATCATGTAAATAGTAAGCACAAG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AAAGCTGGAGTGGCTACATTAGTATCAAATAAAAATAGATTTCTAAAAAAAAGTATCATAAAAGATAAAGAAGG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 GCACTTTAGAAGAAGAAAAGGAATAATTGATCAAGATGACATAAAATTTACAAATTTATTTGTGCCTAATAATA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GTCTCAAATTACATAAGGCAAAAACTGATAGAATGAAAGGAAGAAATAGGCAATTATAATTGGAAATTTTAATG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TCTCTCAGAAGTTGATAGAGTAACCAACAAAAAATCAGCAGACAGAAAACCTGAACAACATTATCAGTCACTTT 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 GACCTAATTAATATTTTTAGAACATTTCACTCAGCAATAGCAAAATGCACATTCTTTTCAAGTGCACATGGAAT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 GCTTACCAAGATAGACCACATTCTGGACCATAAAAAAGTTTTAATAAATATTAAAAAGGTTGAAATCAAATAGT 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 TTGTTCTCTGACCACAATGAAATTAAATTGGAAACCAAAAACAATAAGATAACTAGGAAAACCCCAAGCATTTG 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 GAAACTAAGCAACACACTTCTAAATATTTATTGGGCTAAAGACTAAATCACAAGAGAGATTGAAAATATTTTGC 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 CCTGATGATAATATAAATACACATTTCAAAATTTGTGCAATGTAGCTAACATAGCACTTTGAGGGAAATTTACA 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 GTTTTGAAAGCCTATACGAAGTGGGGAAAGTTCTTAAATCAATGATCTTAATTTTCACTGTTAAAAAATAGAAA 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 AAAAAGAGTAAATTGAACTCAAAGCAAGCAGAGGAAGAAAATAATAAAGATAATGACAGACATCAATGAATTAG 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 AGAACGAAAAAAAGAGATAAAAAAATCATTAAAAGCAAAAAGCAGTCCTTTGAAAAAACTAATAAAATTGATAA 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 ATCTCAAGACTGACTGGCAAAGAAAAAAAAATGAACAATATCAAGAATGAGAGAAGGGACATTATTACTTTGGA 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 TATTAAAAGAATAACAATTCTCTATTGTTATGAACAACTTTATGACATTAAATGTGTCACAGATGAAATGAACA 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 CATTCTGGGAAATACATAAATTATAAATCTAATCAAAGATGAAATAGAAAGCTTGAACAGCCCTGTATCAATTA 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 AAGATATTGAATTTGTAATTAAAAACTTACTGAGAGAATTCTGGGTTTAGATGCTTCATTGATGAATTCTGACA 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 AACATTTATGAAAAAATAATACCAATCCTACAAAAACTGTTTAAGAAAATAAAGGAGGAGGCATGATTTTATGA 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 TGCAGTATTATTCTAATTCTACAGCCAGATGAAGACATCTTAAGAAAAAAACTACAGTCCAATATCCCTCATGA 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 ATATAAATGCAAAAATCCTCAACAAAATATTAGCAAGCCAAATCCAGCAGCATAAAAAAGGTTATACACTATGA 4810
Query 1 ---------------------------------------------------------ATGGAGTCTCGCTCTGT 17
||||||||||..|||||
Sbjct 4811 TCAAGGGGCAATGCAAAGTTTTTTTTTGTTTGTTTTGTTTTTTGGGTTTTTTTTGAGATGGAGTCTCAGTCTGT 4884
Query 18 TGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCT 91
.|||||||||||||||||||||..|||||||.||||||||.||||||||||||||||||||||||||||||.||
Sbjct 4885 CGCCCAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGTAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCT 4958
Query 92 GCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCACCACCACGCCCGGCTAA-TTTTGTATTTTTGGTCGA 164
||||||||||||.||||||||||||.||.||.||.||||.||||||||.|||||| ||||||||||||.||.||
Sbjct 4959 GCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCACAACCACGCCTGGCTAATTTTTGTATTTTTAGTAGA 5032
Query 165 GACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCA-CCACCTCGGCCTCCC 237
|||.||||||..|||||||.||||.||||||||.||||.|||||||||| ||||||| |||||||.|.|||||
Sbjct 5033 GACAGGGTTTCACCATGTTGGTCAAGCTGGTCTCGAACGCCTGACCTCA--TGATCCACCCACCTCAGTCTCCC 5104
Query 238 AAAGTGTTGAGA-------------------------------------------------------------- 249
|.||||.||.||
Sbjct 5105 ATAGTGCTGGGATTACAGGTGTAAGCCACCGCGCCTGGCCAATGCAAAGTTGTTTTAACAGCTGACAGTTAATC 5178
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5179 AATGTAATTCAACAAATTAATAGAATAAAGACAAAAACACAGACACAGTGGTGCAATGTAGCTAACATAGTACT 5252
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5253 TAGAGGGAAATTTATCATTTTGAAAGCCTATAAGAAGGGGGTAAAAGGTCTTTTAGTCCTAGCCACTCAGGAGA 5326
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5327 CTGAGGCAGGAGGTTTGTTGGAGACCAGGAGTTCAAGGCTATAGTGCACTATCATTGCACCTGTGAATAGCCAC 5400
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5401 TGCATTCCAGCCTGGGCAACATAGCAAGATCCTGTCTCTTAAAGAAAAAAAGGAAGAAGGTGAAAACAATATGA 5474
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5475 TCAGTTCAATAGGTGCAGCAATAGCATTTGTCAAAATTCAACTCCTTTTTATCATTAAAAAATCTTTCAGCAAA 5548
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5549 TTAAGAATAAATTAAAACTTCCTCAACCTGATTAAGGGCATCTACAAAATCTGTCAGCTAACATCCTACTACAA 5622
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5623 TGTGAAAAATCAATGCTTTCTACCTAAGACGAGGTAGAGGGCAAGGATGTTGGCTCTCATCATTTTTATTTAAC 5696
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5697 TTAAATTGTATAGGAGTGCCTAGTCAGTGCAACAAAGCAAGGGAAAAATAAGGCATACATGCTAGAAAGAAATA 5770
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5771 AGTAAAATTGTCCTTATCTACAAGTGACATTGTATAGAAAACCCTAAGAAACCCACAATAAAAGCTATTAGAGG 5844
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5845 TACAAGGTTGCAGGATAAAATATACAAAAATCAATTCAAGGTTGCAGGATAAAATATACAAAAATCAATTCTGT 5918
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5919 CTCACATACTAGCAACTAACATTTAGAAAGTTAAGTTATAAGACACTTTGTTTACAATAGCATAAAATACTTAG 5992
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5993 CAAAAGACATGTATGACCTGTAGGCTGAAAACAATAAAACATGACAGGAAGATCTGCATAAATGAACAGCTATA 6066
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6067 CCGTGTTCATGGATTCAAAGTCTCAATATTGTTAAGCTGGCAATCCTTTTTGAATTATTCAATAAATTCAATGC 6140
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6141 AATTCCCACGAAAATCGTAACTTTTTTTTTGAAAAAAATTTGCAAGAGTATTTTAAATTTTATATGGGAAGTCA 6214
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6215 AAGGACCTAGTATAGCCACATCGTTTTGAAAGAGGAGAACAATATTGGAACACTTCAGCTACCTGATTTCAAGA 6288
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6289 ACAATATGTGGCTCTGAAGGAATGAACCAATTTTATTCTTTGATCTATAAATTGGCATTTAAATAATTTCCAAA 6362
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6363 TGAGGAGAGATGGGTAGCTCTGAGATAAGCATGTGACTTCCCAAGGTGGCCAATTTGAAGGGTAATTCTCCTTT 6436
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6437 GGGATGATTGCTAAGGGAAAAAAAAAATCCATGTTGAACATAAGGTTTGTAATCAAGACAACTGGATTTAAATA 6510
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6511 TTGGATGCACCATTCAGCTCTCTAAAACTGAGTATCTTCATCTTAAAATGGGATGTGCAGTGTAAGGATTAAGG 6584
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6585 CAGTAAAGTATAGAGGCTAAGCCGTGTGCTATAGCACTGGAGCTATCTTACCCAGGTTTGAATCTAGCTTGGCC 6658
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6659 ATTTTCTAGCTATGTGGCCTTGGGTATGTTTAACCTTACTTTGCTTCATCTTGCTCATTTGTACAAGCACTGCT 6732
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6733 CGTTTTATTGCATTTCACTTTATTGCACTTCACATATATTGCATTTCTTACAAATTGAAAGTTTTTGGCAACCT 6806
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6807 TGTGTGGGATAAGTCTATTGGTGCCATTTTTCTAACAGCATGTACTCACTTCATGTCTCTGTGTCAGCATTTTT 6880
Query 250 -------------------------- 249
Sbjct 6881 TAGCAATAAAGTATTTTTTAAATCAA 6906
