Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10792
- Subject:
- NR_148053.2
- Aligned Length:
- 6950
- Identities:
- 218
- Gaps:
- 6703
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGGAGAGATGCGAAATCAGCGGTAGCAGGTGGCGCAGAAGGGAGAGGGGAGCGACCCTGGGGACCGACTCTGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GACCCTCGCCGAAGAGTCCCAAGGGTTCCAAGGCCAGAGAGAGGTCCTGGTCTTGATTGCTGGCATGTTTACTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTCCAAGTACACTGAGATCAAATGCAAAGACAAACCATCAAAGAAAATAACTCTAAAATCTGGACATGATATAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAAGTGACTGCCTAAAGGAGCTGAAGAGAGGACATAAGTGGATCGCCTCTGCTGTTGCATGTTGGCTTGGAGAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAGAAGATGAGGAGCCAAATAAGCAAGTCCTTCAGCCCCAGGCTTCTAGCACGGGGCTGCATGTAGGCTATGCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTCTGGGGAGTGAGGAGATCATGAATGCTGAAAATAAATGAAGGAATCCAGAAAAGCAAGAGTCAAAGAAGGCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCTGCAGGCCAAATCTCTGATCAACCCCTGACCCACATACACACAAAATACACTCAAAGCAGCTCAGCTAAAGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CAAAGATCTGCACTCAGAGTAGAGCTGCCTCCCCAGAAACAGAGCTCGCAGTTCAGGCCCAGCAAGAAAATTAC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTGCAAAACAAAGGAAAAACAACACTCATCAGAGAAAAAGAACAGAATCTGGAATCTTCACAACCTAGCATTCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TCATATCCAAGATTGAAACCCAAATTATGGGACATATTTAAAAACCAGGAAAATGGAACGTAGTCTTAAGAGAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAGTCAATCAAATCTGACCTGGAGATGAATAATATATTGAAACTTAAAAGGCAAGGGTTTTAATTTTTGTTTTC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTGTTTTTTTTCTGTTTGTTTGTTTGTTTTTGTTTTTGTTTTTTGAGATGGAATCTTGCTCTGTCGCCCAGGCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GGAGTGCAGTGGCGCAATCTTGGCTCACTGCAGCCTCTGCCTCCTGGGTTCAAGGAATTCTCCTGTCTCAGCCT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCCGAGTAGCTGGGACTACAGGCGCACGCCACCACACCCAGCTAATTTTTGTGTTTTTAGTAGAGACAGGGTTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CACCATATTGGTCAGGCTGGTCTTAAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CATTACAGGCATGAGCCACCGCACCCAGCCTTGTTTTCTGGGGTTTTGTTGAGATGAGGTCTCACTCTGTCACA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CAGGCTGGAGTGTAGTGGTGCGATCCCAGCTCACTGCAGCTTTAAACTCCTGGGCTCAAGCAATCCTTTTGCCT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CAGCTAGCATGCTCAGTTAATTTTTAAATATTTTTTGTAGACATGGGGTCTTGCTATGTTGCCTAGGCTGGTCT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TAAACTCCTGGCTTCAAGCAATCCTTCCACCTTGGCCTCCCAAAGTGGTAGGATTATAGGTGTAAGCTCTCCTG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CCCAGCCGGCAAGGGCTTGAAAGTGTTATGTTATTTTATAGTTTTAGGAGGTTTTGTAGCTCTCTATGATGAAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTTAAAAATTAAGAAAAAAAGCTTGTTTTTGATTAATCGAAATCTCAGCACAGAAATGGGACATTTCATCAGAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AAATAGATACAATGAAGAAGAGCCAAATGGAAAGCCCCCTTTTTTGGTTGCTCTTTTTCTGCTTTCAAGGTTTA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TATTAGCTTGACTTAGATGTGCCTTGGAGTGGACTTCGTTATGTCCCTTCTGCTTAGTGTTTGTCTAATATCTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GAATCTGCAAATCTCTGACTTTCATTACAGCTGGGAAGTGTTTGGTTATTATTTCTTTAAATATTTTTTCTACT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGAGTTTCTTCTCTCCCTCTGAGATTTCAATTACATGTATGTTTGTTTGATATCATCTAACAAGTCTCTGAGAT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTTGTTCATTATGTTCTAAGTCTTTTTCCACTCTGTTACTCATTTTGAGTAATTTTGATTGATCTGTCTTAAAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TTTACTCTTTCCTTTAACATGTCCACTTGGCTGTTAACTCCATCTGGTGAATTTTCTACTTAAGAAATTATACT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TTTCAGCTGTAGAATTTACATGAAGAAGTACATTATCAACTGTAAATGGGCCATGAAAAGTTAAGGTTGAATTT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TGTAATTTATAAATCAACTATTAAACAGTGCAGAATAGCTGTAAAGCATCAGGAAAATTAAAATAGAATATATC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TTAAAATATTAAGTAATTTTTAAAGGCGGGAAATAAGAAATGAAGAAACAAATGTCAGAGGAGACAAATAGAAA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ACAAAATAAAACAAAAATGATAGACTCATACCCAACCATTTCAAAAATTACATTGAACATTTATGAGCTAAACA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CTCCAATTAAAAGACAGAGATTAATAATTGTTTTTAAATGGATACAAAAACAATTATAACATCTCACCAAAGAA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GATACACAGATGCCAAAAAATTTGAAAAGCTGTTTAATAGTATATGTTATTAGGTAATTACAAATTAAAACAAC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AATGAGATACCACTACACATCTACTAGAATAGCCAAAATTCAAAATGCTAACAACACCAAATGCTGGTAAGGAT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GTGGAACAACAGAAACTGTCATTCATTGTTGATGGGAATGCAAAATGGTTTGGCCACTTTGAAAGACAGTTTTG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ACAGTTTCTTGCAAAACGAAACATACTTTTACCATATGATTCAACAATCTTACTCCTGGGTATTTACCCAAATG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AGCTGAAAACTTATGTCCACACAAAACCCTGCACATGGATGTTTATAGCAACTTTATTCATAATTGCCAAAAGC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGGAAGCAATCAAGATGTCCTTCAGTAGGCAAATGGATAAACCGTGATATATCCAGACAATGGAATATTATTCA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GTGTTAAAAAGAAATGAGCTGTCAAGCCATGAAGACATGGAGGAATGTTAAATGCATATTACTAACTGAAAAAA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GCCAATTTGAAAGGGCTGTGTACTGGATGGGTCAAACTATACGACATTCTGGAAAAGGCAAAACCATGGAGACA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AAAAGATCAGTAGTTGCCAAGGGTTGGGCAGAGGCAAGGATGAATAGATGAAACATAGAAGATTTTTAAAGGAG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TGTAACTATTCTATATGATACTGTCATGGTGGCTATATGTACATAAATACATTAGACATTTGTCAAAACTCATA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GAATGTATAATACCAAGAGCAAACTCTAATGTAAACTACGGACTTTGGATAATAATGATACATCAGTGTAGGTT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CATTGATTGTAGCAAATGCACCACTCTGGTATGGGATGTTGATAGTGGGGAGGCCATATGTGTAGGGGTAGGGG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GTGTGTGGGAACTGTCTGTACTTTCATCTCAATTTAGCTGTGAATCTAAAACTGCTCTAAAAAAATAAAATCCA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TTTTTTAAAAACCTAAATATAAACTATGTGCAAAGACATACTTTCAATATAAAGACAGAAGGAAACCAAATATA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 GATGGATAGAAAAAGATATATCATGTAAATAGTAAGCACAAGAAAGCTGGAGTGGCTACATTAGTATCAAATAA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 AAATAGATTTCTAAAAAAAAGTATCATAAAAGATAAAGAAGGGCACTTTAGAAGAAGAAAAGGAATAATTGATC 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 AAGATGACATAAAATTTACAAATTTATTTGTGCCTAATAATAGTCTCAAATTACATAAGGCAAAAACTGATAGA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 ATGAAAGGAAGAAATAGGCAATTATAATTGGAAATTTTAATGTCTCTCAGAAGTTGATAGAGTAACCAACAAAA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 AATCAGCAGACAGAAAACCTGAACAACATTATCAGTCACTTTGACCTAATTAATATTTTTAGAACATTTCACTC 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 AGCAATAGCAAAATGCACATTCTTTTCAAGTGCACATGGAATGCTTACCAAGATAGACCACATTCTGGACCATA 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 AAAAAGTTTTAATAAATATTAAAAAGGTTGAAATCAAATAGTTTGTTCTCTGACCACAATGAAATTAAATTGGA 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 AACCAAAAACAATAAGATAACTAGGAAAACCCCAAGCATTTGGAAACTAAGCAACACACTTCTAAATATTTATT 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 GGGCTAAAGACTAAATCACAAGAGAGATTGAAAATATTTTGCCCTGATGATAATATAAATACACATTTCAAAAT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 TTGTGCAATGTAGCTAACATAGCACTTTGAGGGAAATTTACAGTTTTGAAAGCCTATACGAAGTGGGGAAAGTT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 CTTAAATCAATGATCTTAATTTTCACTGTTAAAAAATAGAAAAAAAAGAGTAAATTGAACTCAAAGCAAGCAGA 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 GGAAGAAAATAATAAAGATAATGACAGACATCAATGAATTAGAGAACGAAAAAAAGAGATAAAAAAATCATTAA 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 AAGCAAAAAGCAGTCCTTTGAAAAAACTAATAAAATTGATAAATCTCAAGACTGACTGGCAAAGAAAAAAAAAT 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 GAACAATATCAAGAATGAGAGAAGGGACATTATTACTTTGGATATTAAAAGAATAACAATTCTCTATTGTTATG 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 AACAACTTTATGACATTAAATGTGTCACAGATGAAATGAACACATTCTGGGAAATACATAAATTATAAATCTAA 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TCAAAGATGAAATAGAAAGCTTGAACAGCCCTGTATCAATTAAAGATATTGAATTTGTAATTAAAAACTTACTG 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 AGAGAATTCTGGGTTTAGATGCTTCATTGATGAATTCTGACAAACATTTATGAAAAAATAATACCAATCCTACA 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 AAAACTGTTTAAGAAAATAAAGGAGGAGGCATGATTTTATGATGCAGTATTATTCTAATTCTACAGCCAGATGA 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 AGACATCTTAAGAAAAAAACTACAGTCCAATATCCCTCATGAATATAAATGCAAAAATCCTCAACAAAATATTA 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 GCAAGCCAAATCCAGCAGCATAAAAAAGGTTATACACTATGATCAAGGGGCAATGCAAAGTTTTTTTTTGTTTG 4884
Query 1 -------------------------ATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCG 49
||||||||||..|||||.|||||||||||||||||||||..|||||||.
Sbjct 4885 TTTTGTTTTTTGGGTTTTTTTTGAGATGGAGTCTCAGTCTGTCGCCCAGGCTGGAGTGCAGTGGTGTGATCTCA 4958
Query 50 GCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGA 123
||||||||.||||||||||||||||||||||||||||||.||||||||||||||.||||||||||||.||.||.
Sbjct 4959 GCTCACTGTAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGG 5032
Query 124 CATGCACCACCACGCCCGGCTAA-TTTTGTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTC 196
||.||||.||||||||.|||||| ||||||||||||.||.|||||.||||||..|||||||.||||.|||||||
Sbjct 5033 CACGCACAACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGTCAAGCTGGTC 5106
Query 197 TTGAACTCCTGACCTCAAGTGATCCA-CCACCTCGGCCTCCCAAAGTGTTGAGA-------------------- 249
|.||||.|||||||||| ||||||| |||||||.|.||||||.||||.||.||
Sbjct 5107 TCGAACGCCTGACCTCA--TGATCCACCCACCTCAGTCTCCCATAGTGCTGGGATTACAGGTGTAAGCCACCGC 5178
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5179 GCCTGGCCAATGCAAAGTTGTTTTAACAGCTGACAGTTAATCAATGTAATTCAACAAATTAATAGAATAAAGAC 5252
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5253 AAAAACACAGACACAGTGGTGCAATGTAGCTAACATAGTACTTAGAGGGAAATTTATCATTTTGAAAGCCTATA 5326
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5327 AGAAGGGGGTAAAAGGTCTTTTAGTCCTAGCCACTCAGGAGACTGAGGCAGGAGGTTTGTTGGAGACCAGGAGT 5400
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5401 TCAAGGCTATAGTGCACTATCATTGCACCTGTGAATAGCCACTGCATTCCAGCCTGGGCAACATAGCAAGATCC 5474
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5475 TGTCTCTTAAAGAAAAAAAGGAAGAAGGTGAAAACAATATGATCAGTTCAATAGGTGCAGCAATAGCATTTGTC 5548
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5549 AAAATTCAACTCCTTTTTATCATTAAAAAATCTTTCAGCAAATTAAGAATAAATTAAAACTTCCTCAACCTGAT 5622
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5623 TAAGGGCATCTACAAAATCTGTCAGCTAACATCCTACTACAATGTGAAAAATCAATGCTTTCTACCTAAGACGA 5696
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5697 GGTAGAGGGCAAGGATGTTGGCTCTCATCATTTTTATTTAACTTAAATTGTATAGGAGTGCCTAGTCAGTGCAA 5770
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5771 CAAAGCAAGGGAAAAATAAGGCATACATGCTAGAAAGAAATAAGTAAAATTGTCCTTATCTACAAGTGACATTG 5844
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5845 TATAGAAAACCCTAAGAAACCCACAATAAAAGCTATTAGAGGTACAAGGTTGCAGGATAAAATATACAAAAATC 5918
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5919 AATTCAAGGTTGCAGGATAAAATATACAAAAATCAATTCTGTCTCACATACTAGCAACTAACATTTAGAAAGTT 5992
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5993 AAGTTATAAGACACTTTGTTTACAATAGCATAAAATACTTAGCAAAAGACATGTATGACCTGTAGGCTGAAAAC 6066
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6067 AATAAAACATGACAGGAAGATCTGCATAAATGAACAGCTATACCGTGTTCATGGATTCAAAGTCTCAATATTGT 6140
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6141 TAAGCTGGCAATCCTTTTTGAATTATTCAATAAATTCAATGCAATTCCCACGAAAATCGTAACTTTTTTTTTGA 6214
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6215 AAAAAATTTGCAAGAGTATTTTAAATTTTATATGGGAAGTCAAAGGACCTAGTATAGCCACATCGTTTTGAAAG 6288
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6289 AGGAGAACAATATTGGAACACTTCAGCTACCTGATTTCAAGAACAATATGTGGCTCTGAAGGAATGAACCAATT 6362
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6363 TTATTCTTTGATCTATAAATTGGCATTTAAATAATTTCCAAATGAGGAGAGATGGGTAGCTCTGAGATAAGCAT 6436
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6437 GTGACTTCCCAAGGTGGCCAATTTGAAGGGTAATTCTCCTTTGGGATGATTGCTAAGGGAAAAAAAAAATCCAT 6510
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6511 GTTGAACATAAGGTTTGTAATCAAGACAACTGGATTTAAATATTGGATGCACCATTCAGCTCTCTAAAACTGAG 6584
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6585 TATCTTCATCTTAAAATGGGATGTGCAGTGTAAGGATTAAGGCAGTAAAGTATAGAGGCTAAGCCGTGTGCTAT 6658
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6659 AGCACTGGAGCTATCTTACCCAGGTTTGAATCTAGCTTGGCCATTTTCTAGCTATGTGGCCTTGGGTATGTTTA 6732
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6733 ACCTTACTTTGCTTCATCTTGCTCATTTGTACAAGCACTGCTCGTTTTATTGCATTTCACTTTATTGCACTTCA 6806
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6807 CATATATTGCATTTCTTACAAATTGAAAGTTTTTGGCAACCTTGTGTGGGATAAGTCTATTGGTGCCATTTTTC 6880
Query 250 -------------------------------------------------------------------- 249
Sbjct 6881 TAACAGCATGTACTCACTTCATGTCTCTGTGTCAGCATTTTTTAGCAATAAAGTATTTTTTAAATCAA 6948
