Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
XR_001736989.1
Aligned Length:
4538
Identities:
205
Gaps:
4306

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGCGGGGCCGGGAGCTGCGAGGAGCCCCCCAGACGTCGCCGAGCGCGAGGGCGGGCGTGCTCGGAGTGGTCGCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGTCAGCCGCCGCCCCTCAGTCTCCGCACTTGCAGGTCCCCTCCCTCTCCGCCGGGACGCGGGAGAGCCCGGCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGCGGCGGGGGCGGCCAATGCGAAACTGGCTGGTGCTGCTGTGCCCGTGTGTGCTCGGGGCCGCGCTGCACCTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGGCTGCGGCTGCGCTCCCCGCCGCCCGCCTGCGCCTCCGGGGCCGGCCCTGCAGGTGGAGTCTCACTCTTGTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCCCAGGCTGGAGTGCAATGGCGCGGTCTCGGCTCACCCCAACCTCCACCTCCCGGGTTCAAGAGATTCTCCTG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCTCAGCCTCCCAAGTAGCTGGGATAACAGATCAGTTGGCCTTATTTCCTCAGTGGAAATCTACTCACTATGAT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GTGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTCGAAACGTGATAAGAAGCACCTGGATGAGACA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TTTGCTACAGCATCCCACATTAAGTCAACGTGTGCTTGTGAAGTTCATAATAGGTGCTCATGGCTGTGAAGTGC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CTGTGGAAGACAGGGAGGATCCTTATTCCTGTAAACTACTCAACATCACAAATCCAGTTTTGAATCAGGAAATT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GAAGCGTTCAGTCTGTCCGAAGACACTTCATCGGGGCTGCCTGAGGATCGAGTTGTCAGCGTGAGTTTCCGAGT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TCTCTACCCCATCGTTATTACCAGTCTTGGAGTGTTCTACGATGCCAATGATGTGGGTTTCCAGAGGAACATCA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CTGTCAAACTTTATCAGGCAGAACAAGAGGAGGCCCTCTTCATTGCTCGCTTCAGTCCTCCAAGCTGTGGTGTG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CAGGTGAACAAGCTGTGGTACAAGCCCGTGGAACAATTCATCTTACCAGAGAGCTTTGAAGGTACAATCGTGTG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGAGAGCCAAGACCTCCACGGCCTTGTGTCAAGAAATCTCCACAAAGTGACAGTGAATGATGGAGGGGGAGTTC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TCAGAGTCATTACAGACTGTGGAAACAACGAGCTTCAATTTGTTGCTGAAGACAGATGATGACTGTTACATAGA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CCTCGAAGCTGTATTTAATAGGATTGTCCAAAAGAATCTGGATGGGCCTAATTTTTGGTGGGGAAATTTCAGAC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TGAATTGGGCAGTTGACCGAACCGGAAAGTGGCAGGAGTTGGAGTACCCGAGCCCCGCTTACCCTGCCTTTGCA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TGTGGGTCAGGATATGTGATCTCCAAGGACATCGTCAAGTGGCTGGCAAGCAACTCGGGGAGGTTAAAGACCTA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TCAGGGTGAAGATGTAAGCATGGGCATCTGGATGGCTGCCATAGGACCTAAAAGATACCAGGACAGTCTGTGGC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TGTGTGAGAAGACCTGTGAGACAGGAATGCTGTCTTCTCCTCAGTATTCTCCGTGGGAACTGACGGAACTGTGG  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AAACTGAAGGAACGGTGCGGTGATCCTTGTCGATGTCAAGCAAGATAACAGGGACTTGAATTAGCAGAGTCTAA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AATCAGGGCAGGCAAACGATAATCTGAGTGCAAGTCTGAGGAGTCCCAGGGTTTAGCAGTAGACTGTATGGTCT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TTCAAGAGAGTTCCAGACTGGCACTTTCACCCAGAACCAATGCGGTGTTTCTTAATGTTTGCACAAATTTCCTT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AAAAATCAACTTGTACTGTAGCATAAGAAAAGTTTTTATTTATCTATTGGAAGATTATCAGAAAAATACCAAGT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TATTTTATAAAAGAAAAAATATTTCTAAATCCTGATGCATTGTGGCTAATTAGTAATTCACCATTACCTATAGT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TTTTGGTTAAAACTTGGCCTAGTTCAGAAATCTGTAGTAGTAACTGAGAGTTTGAATTTCAACCTGGATTGCAG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GATAGCTCTGTAGAGCTAATTAGGATAATTATCAGACAAAAAGGAACTCACAGGAATGCTGTGTGATCATGTGA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TCACATATTTGAGCAGTGGTCACTTATACCAAAGTTTGGGGTTTCTGGAAATAATGTCAGATTTTGTGGATCTC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TGAAGTGGGCAACTTGAACTAACTTGAAGAGGAACCAATATGATTCTCAGTTCTGAACCTTGGTTTTAAAGAAG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TTCATTTATATGGTAGACTAATACCCAAATTTTCTTTCTGCCATCTAACATAAATCCTGAAGGTCACAGTTTAG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  TACTCATAGTTTTTAAATGCTAAAGTTGTGTGAGTATGAATAAAAGCAAATACCTCTCAGGGTTTTAGTGCCAT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CGGGAAGGATATTTCTAAATTTTGTTGACATTTTGAAAGAATTAGTTTTGCTTTCCTCCTATCATTGCCTAATG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TTTACCTAATATGAGTACATTTCAATCAAAGCTGGTTATCACAGAAGAAGATATACTCAGCTTAGGTATAATTG  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TAGGGAAAAGCATGTGATTAATTTAAGTACTCTTAGAAATAGTGCAACTGAGAAGACAGATAATAGCATATTGT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TATACATAGTAGAGGATGTCTCCCCAAGTTTAAGGGACATTTCCCAAAATGACCAACCAAATCATTTCTAGTAA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  CCCTTTAAAATAGTAGTTTCAATAGAGAATTCCATTAAAACTAGTCTTATGACAGATATTAACTGTGTTCAGAT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TTTATTAGGCTAGCTAGTTTCTTTCTATTTAATATTTAAATCTTATCATGAAATGCAGTGATGAGCTGTAAAAA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TAAATATGAAATAAGATCAGAAAATCATTAGTAGGTTCAAAGCCTTTATTATTGCTATTATGTATAAGCCTAGA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  AATGGTCACTTCCCAACAAAAAATACATCCCTTGTTATACTTAGGACAAGTTGTAAACCCCCTTTGTTTTGACA  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GTAGAATTGTTCCAGTGAATCATTTATTTCCGGTGAACCCCAGACACGATAAGCAGTGTGGTCTTTAAATTTTA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TTAGTTGGTTGTCACCATCGCACTAATAGACAATCTCCATTTTCCACAGAATAAAACTGTAATGACTTTAGGTC  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  ATTTTCCAGCTCGATTTCTCTGCCCGGCTTCTAAAATTAGAACGAAGGTGGGGAAGGATGTGATTAAGACAGAT  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  CCGATAAAGCATGCTACACATACTCTTCCCCCACCCCGTCCCCAGGCAGTAGCTTACCCTTAAAATCAAACAAA  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  CAGACCCATGGTCTCCATTTAGAATCAAACTGTTGCTATCTAGAGACAGTTTAATGTCATAATACGAGGACTAA  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  GCTTGACTTTGACTTTGTATTTTGCTGGGCAACTTACTTTGGGACTTTCATAGGACAACAGAAGGTCTGACACA  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  GGAACTTTGAGAAGACGTGACAGCAATCCCTTCACCTTTTGAATTGTCATGGAGCCTATCAAAAGACAAGAAAA  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  GTCCATTCGTTCTCTCAAATGACAGTTACCTGTAAAACTAGCTCATGTGATGAGACCACAGTATCATTGCAATG  3478

Query    1  --------------------------------------------------------------ATGGAGTCTCGC  12
                                                                          |   |||||.||
Sbjct 3479  ATAGCTGTATCTGTCTTTTTTTTTTTTTTTTTTTTGAGACTGACTTACTTACTTACTTAAGTA---AGTCTTGC  3549

Query   13  TCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATT  86
            |||||.|||||||||||||||||.|||..|.|||||||||||||||||||||.||.||||.|||||||.|.|||
Sbjct 3550  TCTGTCGCCCAGGCTGGAGTGCAATGGTGTAATCTCGGCTCACTGCAACCTCCGCTTCCCGGGTTCAAACAATT  3623

Query   87  CTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATG--CACCACCACGCCCGGCTAA-TTTTGTATTTT  157
            ||.||||||||||||||.||||||||||           ||  ||.||||||.|||.||||| |||||||||||
Sbjct 3624  CTCCTGCCTCAGCCTCCTGAGTAGCTGG-----------TGCCCATCACCACACCCAGCTAACTTTTGTATTTT  3686

Query  158  TGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACC--ACCTC  229
            |.||.||||||||||||..|||||||.|.||||||||||||||||||||||||||  |||||||.||  .||| 
Sbjct 3687  TAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTC--GTGATCCGCCCGCCCT-  3757

Query  230  GGCCTCCCAAAGTGTTGAGA------------------------------------------------------  249
            ||||.|||||||||.||.||                                                      
Sbjct 3758  GGCCCCCCAAAGTGCTGGGATTACAAGCATGAGCCCAGCGCCTGGCTGTATCTTTCATTTTACCCAAGTCACTT  3831

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3832  TACCCAAGTAAGTAATTAGGGGAAAGCCTGAGTCTTGTACCACCTGTTCATTTGGGGAACTGTGGGAAACGGAG  3905

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3906  CCAACGGACCTAAGTGCCCTTTGACAGTGAGTTTCATACCATTTCAGTAGTGTATTTCTTTCTTAATCTGAATA  3979

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3980  AACCAGAATGATACTCTCAGCACAGAAGAATAAAGGGAGCGAGTCATTAACGTTTTCTTTTTAAACCTTTATGA  4053

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4054  TGACTTCCTTATGAATTACTGAACGAACACTGGAATGGGACTCAGGTATCCTGAGGACATCTCTCAACTCTGGC  4127

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4128  CTTAGTTCCCCCTCTGTAAAATTAGGGTGCCAACTAAATGATCTACAAGGTCCCTTCCAGCGCCGCCATTCTGT  4201

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4202  AATTACATCATGTGTAACTGTATTAAACATACACAAGTGACTGCCAGGCATGGGAATGTAACTTCCGAGTAAAT  4275

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4276  GCTTTGGTTTGTTCAGAATACACTATGAACTTCTTTCCAAAGACGGGTTGTGGTAAATAGTGGATATTTTGATT  4349

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4350  ATAAGAAATAGAGTTTCCTTGAAGCTTTAGCTGGAGATACAGCAATAGTGTGGTGTTCCTACAAATATCACAGT  4423

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4424  GTATTCAAACATATTTTTCTATCAAAAATCATTTTTGTAAAAGCTGTGTGTTTTTATCCAACTTGTGATAATAA  4497

Query  250  ------------------------  249
                                    
Sbjct 4498  ATGTTCTTTATTTTAGAATAAAAA  4521

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