Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
XR_001737529.2
Aligned Length:
4592
Identities:
216
Gaps:
4343

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGGAAGGAAGAGGAAGAGGGTCTGGGCGATGGTGCATCCGGGACGAGCCTCCAGAGACCAAGCGGGATAGGTA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AACCCGCCGCGCAGCTGGCGGGACGCTGGGCCAACGAGGTCTGGGGTCTTGGCGCGGAGTTCATGGGCCGCCGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCAGGCTTGTGCCAGTGGCTTTGGATCCCTGGCCTGCTTCCCCCAACCCAGCCTCCAGACCAGCGCTGGCCTGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCCACACACTCCGCAGCACCGTCCCGGGAACCGAGCGTCGGCGGGGAGGCCGCCTCTCCGCAATACCCCATGTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCCCCATCACTCGAGGAGTCTGGGCAGAGACTGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GACATATTTCTAGTTGTATGAGGTGGCCTGGACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCAT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TTTTCACTAAATTGGAGACCACCCTGTTTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CAACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AACGAAGAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATGCG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCAAATACGCATCTGTTGTATAATCCAAGGCGAGGTGATAT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TAAGCTGACGCAATTGGCAATGCTACTGGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTGCC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAAATTG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AATTATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAGTG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTTTCCTGA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACTCTGCAG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAGACTG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TCACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCATCTGCC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTATTGT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAGCGGTTA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAATATTTT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTAGTAAAA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATTTTGGCA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  AGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGCTTGATT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTATCCAAC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCATCTT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  ATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCATAACG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATACCTT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTGCC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCCTGCC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  TCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGAGACA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCAAAGT  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGTTTAG  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  GGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAACAAAGT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAGATATTA  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  ACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGTTTTC  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAATAAATC  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  CTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAGGAACAA  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  GGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTATTAAT  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  AGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTATAAT  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  TATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAAATTG  3404

Query    1  ----------------------------------------------------------------ATGGAGTCTC  10
                                                                            ||||.|||||
Sbjct 3405  TAATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTGTCTC  3478

Query   11  GCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGA  84
            .|.||.|.||||||||||||||||||||||..||.|||||||||||||||||||.||||||..|||||||||.|
Sbjct 3479  ACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAA  3552

Query   85  TTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCACCACCACGCCCGGCTAA-TTTTGTATTTT  157
            ||||.||.|||||||||||..|||||||||||.||.||.||||||||||||.||||.||||| |||||||||||
Sbjct 3553  TTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTATTTT  3626

Query  158  TGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCA--AGTGATCCA-CCACCT  228
            |.||.||||.||..||||||||||||.|.|||||||||||||||||||||||||||  .|||||||| ||.|||
Sbjct 3627  TAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCCGCCT  3700

Query  229  CGGCCTCCCAAAGTGTTGAGA-----------------------------------------------------  249
            |||.|||||||||||.||.||                                                     
Sbjct 3701  CGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACAGTAT  3774

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3775  TAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAGCAGATA  3848

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3849  TAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAATTCATT  3922

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3923  AGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTAACAAAC  3996

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3997  AAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGGCCCATT  4070

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4071  TTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAGTATTAT  4144

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4145  TTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAATTATCC  4218

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4219  ACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAACAATT  4292

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4293  AAATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTTTAAATGGAAAGGTA  4366

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4367  AACTGTGGAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTCATGTTTGAAATCTTGT  4440

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4441  CTTTATTTGGAATTTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGAGATCCAGAGAGTTC  4514

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4515  AAGGGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAATAAACTATTATACT  4588

Query  250  ----  249
                
Sbjct 4589  CGTA  4592

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