Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
XR_001741752.1
Aligned Length:
4248
Identities:
217
Gaps:
4000

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGGGTGGAAGCTGTATCTCCTTTGCTACAACCTTGCTACCTAGAGCTATTTTTTGATAAAAGCAAGCTTTGAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCAAATTTTGCCTCAGGTACAAGGATCTATTGTTCCGCAAGCACAAAAACAATTATATAGCCAGTTCATATAAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CACAGTGAAGTCCTCATTCTCTCTCCTTTCAGGTTTCTGAGCAAGATGCTTGCATGAAAGATTCAATCTAAGGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CAATGCAAAAATATTGTGAAAGCAGCAGGATCAGCTAGCCTTCCAGTTGGCTTCTTAAATGCTGCATTGAAAGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ATGAAACAGAACGGATGTGAACAAGAGTTCCCTGAGAAAGGACAGCTCTTAGAGAGATAGGATAATTACTGGAC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCAAGAAGATACCAAATCATGGTGTGCATTTCTGCGTTGTGTTTGGAAGAGGAACTAGGATTGTTATGAAAAGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AAGGATGTGTTCAACTTAGAAGAATTAAACCTCAACCATCTGTCTCTTCCAAATGGCATTCTTGATTCTAAAAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TCTTAAGTAGAGTGTAAAGTTATTGTTGGATACTGTAGTAGCCAGGCTAAGCTGAGCTATTCAGTGGAACAGAT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AAACCCGAAAATCTCAGTGGCTTAACACAACAAGATTTATTTCTTTTTAGTATCACAATCTGATGTAGATTGGG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTGGTCTCCTGCTTGGCTTTCCATCAAGTGACAGCTCAGGGATCCAAGTTGCTTTTATTTGGAAACTGTCATCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TGAGAGCATTTTGTTTCCAGCTGTATGGACAGGAGATCCAGAAGGTGTGGAGAAGTGCATCCTTCCTGGATCAC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AAATGATACATCACTTTAGCTCACATTCCATTGTTAAGAATTAGTGACATGATCCCACTGGGATTCATGGGGTC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TGGGATATGGAACACTTGGATATTTGGCGAGCATGAACAATCTTTGCCATAGAAACATTGCCTCTATAATGTTA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TTCTATATCCCTTATCTTCTCATGGTAGATTTCACATAGGATTAGTATCAGGAAAACGTTTTTCTCTCCTAAAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TGTTGGTATTCTTCTTTTTTCCCTCTGGAGTCAGGAACTTTAGATTTAATATTAATGACTATCTAATCTGAGAT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TTTTAGTAGCATCATGTATCCTATTTCTCTATTGTGTTTCTGGAATAGTTTTATTATTGTATTTTAACTGACTA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  ACTGTATTTGATTTTTTAAAAATTGCCATAATCCTTTCTAGTTTTAGCTGTTCATTTAATGAACACTTACCAAT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AGCAGATGTGTTGATAAGGATGAAGGATGTTTTTGGCTGCAACAGAAAAACTAATAAGTGGTTTAAGCAATAAG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AGTTTAATTATCTGACACAAGAAGTCTGGCAGTTTCAGGATAGGTTAATTCAATGGTGTGATATCATAGAGGAT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CATGTATACTCACTTTTTCTGTTTTATAAACTTCAGCGTTTGATGGTGTTCCCCCTTCCTGTCACATACAGGTT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AGTAGTTCCAAGTGTTGCTTGTCATGGTAGACCCTAGTCAGGCCTGGGTCTTGTGACGCAGGAGACAAATATGC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TCATAGACTTGTCGTTATGACATGGCTGCAGTGTGGTGCCACCAGGCCTGCATCACGCCTACTCATCATATAAT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATTAGATTATATAGTCTGTGGAAAATGTTGCAAAATGATACTGGTGGCAGGGTCAGAAATTGTATTCAGACTTT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GATGTTAGATCCAGGCAAATGGCTTGTTGAAAAGAGATTTCTCTTTAGAGAGAAATCATGTTGGTGTACCAGGT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GACATGTTTGGTTGGGGGTGGGGTGGGGGGACTGCTTGGATAGCATGGTAGTGATAGAAGTGTGATAAGCTGGA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TGCTGGATATAGTTAGAAGGATTTACTGATCAATTGGATGTGAGGAGTGATATAGAGAGAGATGTTGGGAATGA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CTCCAAGTTTTGGCCTGAGTGATGGGAAAAATTGAGTTGCTATTTATCAAGATAGGGAAGACCAATGAGTTTGG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TGCTGTCATAAAATAAAATGTATCAGATTTTTAGCAACAACTGGAAGTAAGACATTGCAAGGAGTCTGGGCTGG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GCTGAGATAGAGTTCAGATGGGGAGCTGGAATCAGACTGCTGCCCCAGGTCCTGGGACCCTGCCATGCAGAAAA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GACACCTGGCATGGGCAAGGACTCCAGTATGCCGGAGCCTCTTCCTCCTTTCTCAGGCCAAATTTGTGTCCTTG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CAAAATTTGGCTACAAATGTTAAATTTACAAAGACCTCTGATACCCATTATCCCACCCAACTCTCTGGAGAGCC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TTTGTAATGTGGTAACTGCTCTTATGCACATAGCCAAAGACTTGAAAACAGTCTCAGAAAAGCTGTAATTTCTA  2368

Query    1  ------------------------------------------------------------------AT------  2
                                                                              ||      
Sbjct 2369  CCTTCATTCATTTAAAGAAAACTTACTAAACACTTATTTATTTATTTTTATTTTATTTATTTATTTATTTTTGA  2442

Query    3  GG---AGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCA  73
            ||   ||||||..|.|||||||||||||||.|||.||||||..||||||||||||||||||||||||||||.|.
Sbjct 2443  GGCACAGTCTCAGTTTGTTGCCCAGGCTGGGGTGAAGTGGCACGATCTCGGCTCACTGCAACCTCTGCCTCTCG  2516

Query   74  GGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCACCACCACGCCCGGCTAA-  146
            |||||||||||||||.||||||||||||||..||||||||||||||.||.|||||||||||||.||||.|.|| 
Sbjct 2517  GGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGTCATGCACCACCACCCCCGACAAAT  2590

Query  147  TTTTGTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATC  220
            |||||||.|||||||.|||||.||||||..|||||||.|.|||||||||||.|||||||||||||||||.|| |
Sbjct 2591  TTTTGTACTTTTGGTGGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGGGA-C  2663

Query  221  C--ACCACCTCGGCCTCCCAAAGTGTTGAGA-------------------------------------------  249
            |  ||..||||.|||||||||||||.||.||                                           
Sbjct 2664  CTGACTGCCTCTGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCTGGTCCCAAACATCTATTAG  2737

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2738  GTACTTGCTGTATGTGGTGAAATAAACCCCAGCTCTCCTGATTCAAGGTTAGTGTTCTTTTCACAAATCTACTT  2811

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2812  CAATACATCAAATCCTACTTCTCTTTCTTTCTATATTTAACTCATAAATATTCCTCTTCTGTCATTTGTGGTTT  2885

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2886  TGAAATGTCTGCAAACTCATGGATACTATTCACTTCTAATGAATAGAATAAAGCAGAAGTGATGGAATATAACT  2959

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2960  TCAGAGGCCATTTCATGAAAGCCACTGTGGCTTCCTACTTGTTCTCTTGCTCTCTCTCTTAGAACACTTGCTCT  3033

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3034  GGGGAAAGCCAGCTGCCATATTGTGAGCAGACCTATGAAAAGGCCCACTTGGTGAAGAACTGAGGCCTCTGGCT  3107

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3108  GATGGACACATGGGTGACCTTGCAATCAAGTCTTCTGGCTTCAACCAAGCCTTCAGCTGAGACTGCAGCCTCAT  3181

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3182  GAAAGATCCTGAGCTAGAAGCATCCTGCCATCCTAATAAGCCACTCTTGAATTTCTGACCCTTAAAAATTGTGA  3255

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3256  GATAAGCACCTGTGCTTTTTTTAAGTGTTAGATTTAAAAAACCCTGAAAAAATAAAGAAGAAAAAAGACAACTC  3329

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3330  ATAATCTCACCACATTAAAAAGAATAGCTATAGAAAAATTCCAGTAGTATAAAAAGGAAAAATGGAAATAACTT  3403

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3404  CCCACCATCCCTGATCTTTAGTTCTTTTTCCCACAGTGACATTTTCTTTCCCAAGAAATGTTCATGCATATGCA  3477

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3478  ATATATGTGTAAACCCTTTAAGATGTTCACAAAAGGATCATGTTACACTCATTCGAAAAACTTAATATTATATC  3551

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3552  TTGAAGGTGTCTTCATATCAGTATATATATATCTATCTTAGTTTGTTAATAGATTTCCCATAATTTAAATGTAC  3625

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3626  CATATTTCTTTTACCAGTCCCCATATATGGACATTTAGGATATTTCCAGTATTCTTTTCTGTTATAAAAATATG  3699

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3700  GTGATAAACATTTTCATGCTTTTTTGAGTATCTTCAAGTAAAGTCCTATGGGTAGCATTCTGGCATCACGTTGT  3773

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3774  ATATGCATTTAAAGTTGATGCTATTCACTTGTTCCACAATCTTTGCTCCGAGTTTACACTGATGAAGCATGAGA  3847

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3848  ATGCTATATCCCCACAAACCTGTGCATATTGTTGATAGTAAGCATTGTTTGCTATTTTCTGACTATTCATTTTT  3921

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3922  CTTCTTTTGAGAATTGCCATGCCTAGAAGAGTGCCTGTCTTGTAATATATAAGATAATAACTTGATAGCTAGCA  3995

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3996  TTTCTGAGGCTTCTTGTGCCTTTAACGTATATTTACTGTTTTGATACTTACAAAGACCCTATGAAGTACGTACT  4069

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4070  ATTATTATCTGCTTATGGCTGGTGGGAAAACTGAGCTGTACAGAATTTAAACAAACTGTCCCAGGTCACACAAC  4143

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4144  TAGGAAGGGTGGAGCCAGGATGCAAATGATACGGAATTTTAAAAAATGGGTAGTTGAGTGAATGAATAAATGGA  4217

Query  250  ------------------------------  249
                                          
Sbjct 4218  TGACCTGTTTACATCCTTTCTCATTTTTAA  4247

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