Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10792
- Subject:
- XR_001741752.1
- Aligned Length:
- 4248
- Identities:
- 217
- Gaps:
- 4000
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGGGTGGAAGCTGTATCTCCTTTGCTACAACCTTGCTACCTAGAGCTATTTTTTGATAAAAGCAAGCTTTGAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCAAATTTTGCCTCAGGTACAAGGATCTATTGTTCCGCAAGCACAAAAACAATTATATAGCCAGTTCATATAAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CACAGTGAAGTCCTCATTCTCTCTCCTTTCAGGTTTCTGAGCAAGATGCTTGCATGAAAGATTCAATCTAAGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAATGCAAAAATATTGTGAAAGCAGCAGGATCAGCTAGCCTTCCAGTTGGCTTCTTAAATGCTGCATTGAAAGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATGAAACAGAACGGATGTGAACAAGAGTTCCCTGAGAAAGGACAGCTCTTAGAGAGATAGGATAATTACTGGAC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCAAGAAGATACCAAATCATGGTGTGCATTTCTGCGTTGTGTTTGGAAGAGGAACTAGGATTGTTATGAAAAGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAGGATGTGTTCAACTTAGAAGAATTAAACCTCAACCATCTGTCTCTTCCAAATGGCATTCTTGATTCTAAAAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCTTAAGTAGAGTGTAAAGTTATTGTTGGATACTGTAGTAGCCAGGCTAAGCTGAGCTATTCAGTGGAACAGAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AAACCCGAAAATCTCAGTGGCTTAACACAACAAGATTTATTTCTTTTTAGTATCACAATCTGATGTAGATTGGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTGGTCTCCTGCTTGGCTTTCCATCAAGTGACAGCTCAGGGATCCAAGTTGCTTTTATTTGGAAACTGTCATCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TGAGAGCATTTTGTTTCCAGCTGTATGGACAGGAGATCCAGAAGGTGTGGAGAAGTGCATCCTTCCTGGATCAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAATGATACATCACTTTAGCTCACATTCCATTGTTAAGAATTAGTGACATGATCCCACTGGGATTCATGGGGTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TGGGATATGGAACACTTGGATATTTGGCGAGCATGAACAATCTTTGCCATAGAAACATTGCCTCTATAATGTTA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TTCTATATCCCTTATCTTCTCATGGTAGATTTCACATAGGATTAGTATCAGGAAAACGTTTTTCTCTCCTAAAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGTTGGTATTCTTCTTTTTTCCCTCTGGAGTCAGGAACTTTAGATTTAATATTAATGACTATCTAATCTGAGAT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTTTAGTAGCATCATGTATCCTATTTCTCTATTGTGTTTCTGGAATAGTTTTATTATTGTATTTTAACTGACTA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACTGTATTTGATTTTTTAAAAATTGCCATAATCCTTTCTAGTTTTAGCTGTTCATTTAATGAACACTTACCAAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AGCAGATGTGTTGATAAGGATGAAGGATGTTTTTGGCTGCAACAGAAAAACTAATAAGTGGTTTAAGCAATAAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AGTTTAATTATCTGACACAAGAAGTCTGGCAGTTTCAGGATAGGTTAATTCAATGGTGTGATATCATAGAGGAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CATGTATACTCACTTTTTCTGTTTTATAAACTTCAGCGTTTGATGGTGTTCCCCCTTCCTGTCACATACAGGTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AGTAGTTCCAAGTGTTGCTTGTCATGGTAGACCCTAGTCAGGCCTGGGTCTTGTGACGCAGGAGACAAATATGC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TCATAGACTTGTCGTTATGACATGGCTGCAGTGTGGTGCCACCAGGCCTGCATCACGCCTACTCATCATATAAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATTAGATTATATAGTCTGTGGAAAATGTTGCAAAATGATACTGGTGGCAGGGTCAGAAATTGTATTCAGACTTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GATGTTAGATCCAGGCAAATGGCTTGTTGAAAAGAGATTTCTCTTTAGAGAGAAATCATGTTGGTGTACCAGGT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GACATGTTTGGTTGGGGGTGGGGTGGGGGGACTGCTTGGATAGCATGGTAGTGATAGAAGTGTGATAAGCTGGA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGCTGGATATAGTTAGAAGGATTTACTGATCAATTGGATGTGAGGAGTGATATAGAGAGAGATGTTGGGAATGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CTCCAAGTTTTGGCCTGAGTGATGGGAAAAATTGAGTTGCTATTTATCAAGATAGGGAAGACCAATGAGTTTGG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGCTGTCATAAAATAAAATGTATCAGATTTTTAGCAACAACTGGAAGTAAGACATTGCAAGGAGTCTGGGCTGG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GCTGAGATAGAGTTCAGATGGGGAGCTGGAATCAGACTGCTGCCCCAGGTCCTGGGACCCTGCCATGCAGAAAA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GACACCTGGCATGGGCAAGGACTCCAGTATGCCGGAGCCTCTTCCTCCTTTCTCAGGCCAAATTTGTGTCCTTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CAAAATTTGGCTACAAATGTTAAATTTACAAAGACCTCTGATACCCATTATCCCACCCAACTCTCTGGAGAGCC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTTGTAATGTGGTAACTGCTCTTATGCACATAGCCAAAGACTTGAAAACAGTCTCAGAAAAGCTGTAATTTCTA 2368
Query 1 ------------------------------------------------------------------AT------ 2
||
Sbjct 2369 CCTTCATTCATTTAAAGAAAACTTACTAAACACTTATTTATTTATTTTTATTTTATTTATTTATTTATTTTTGA 2442
Query 3 GG---AGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCA 73
|| ||||||..|.|||||||||||||||.|||.||||||..||||||||||||||||||||||||||||.|.
Sbjct 2443 GGCACAGTCTCAGTTTGTTGCCCAGGCTGGGGTGAAGTGGCACGATCTCGGCTCACTGCAACCTCTGCCTCTCG 2516
Query 74 GGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCACCACCACGCCCGGCTAA- 146
|||||||||||||||.||||||||||||||..||||||||||||||.||.|||||||||||||.||||.|.||
Sbjct 2517 GGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGTCATGCACCACCACCCCCGACAAAT 2590
Query 147 TTTTGTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATC 220
|||||||.|||||||.|||||.||||||..|||||||.|.|||||||||||.|||||||||||||||||.|| |
Sbjct 2591 TTTTGTACTTTTGGTGGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGGGA-C 2663
Query 221 C--ACCACCTCGGCCTCCCAAAGTGTTGAGA------------------------------------------- 249
| ||..||||.|||||||||||||.||.||
Sbjct 2664 CTGACTGCCTCTGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCTGGTCCCAAACATCTATTAG 2737
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2738 GTACTTGCTGTATGTGGTGAAATAAACCCCAGCTCTCCTGATTCAAGGTTAGTGTTCTTTTCACAAATCTACTT 2811
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2812 CAATACATCAAATCCTACTTCTCTTTCTTTCTATATTTAACTCATAAATATTCCTCTTCTGTCATTTGTGGTTT 2885
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2886 TGAAATGTCTGCAAACTCATGGATACTATTCACTTCTAATGAATAGAATAAAGCAGAAGTGATGGAATATAACT 2959
Query 250 -------------------------------------------------------------------------- 249
Sbjct 2960 TCAGAGGCCATTTCATGAAAGCCACTGTGGCTTCCTACTTGTTCTCTTGCTCTCTCTCTTAGAACACTTGCTCT 3033
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3034 GGGGAAAGCCAGCTGCCATATTGTGAGCAGACCTATGAAAAGGCCCACTTGGTGAAGAACTGAGGCCTCTGGCT 3107
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3108 GATGGACACATGGGTGACCTTGCAATCAAGTCTTCTGGCTTCAACCAAGCCTTCAGCTGAGACTGCAGCCTCAT 3181
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3182 GAAAGATCCTGAGCTAGAAGCATCCTGCCATCCTAATAAGCCACTCTTGAATTTCTGACCCTTAAAAATTGTGA 3255
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3256 GATAAGCACCTGTGCTTTTTTTAAGTGTTAGATTTAAAAAACCCTGAAAAAATAAAGAAGAAAAAAGACAACTC 3329
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3330 ATAATCTCACCACATTAAAAAGAATAGCTATAGAAAAATTCCAGTAGTATAAAAAGGAAAAATGGAAATAACTT 3403
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3404 CCCACCATCCCTGATCTTTAGTTCTTTTTCCCACAGTGACATTTTCTTTCCCAAGAAATGTTCATGCATATGCA 3477
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3478 ATATATGTGTAAACCCTTTAAGATGTTCACAAAAGGATCATGTTACACTCATTCGAAAAACTTAATATTATATC 3551
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3552 TTGAAGGTGTCTTCATATCAGTATATATATATCTATCTTAGTTTGTTAATAGATTTCCCATAATTTAAATGTAC 3625
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3626 CATATTTCTTTTACCAGTCCCCATATATGGACATTTAGGATATTTCCAGTATTCTTTTCTGTTATAAAAATATG 3699
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3700 GTGATAAACATTTTCATGCTTTTTTGAGTATCTTCAAGTAAAGTCCTATGGGTAGCATTCTGGCATCACGTTGT 3773
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3774 ATATGCATTTAAAGTTGATGCTATTCACTTGTTCCACAATCTTTGCTCCGAGTTTACACTGATGAAGCATGAGA 3847
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3848 ATGCTATATCCCCACAAACCTGTGCATATTGTTGATAGTAAGCATTGTTTGCTATTTTCTGACTATTCATTTTT 3921
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3922 CTTCTTTTGAGAATTGCCATGCCTAGAAGAGTGCCTGTCTTGTAATATATAAGATAATAACTTGATAGCTAGCA 3995
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3996 TTTCTGAGGCTTCTTGTGCCTTTAACGTATATTTACTGTTTTGATACTTACAAAGACCCTATGAAGTACGTACT 4069
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4070 ATTATTATCTGCTTATGGCTGGTGGGAAAACTGAGCTGTACAGAATTTAAACAAACTGTCCCAGGTCACACAAC 4143
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4144 TAGGAAGGGTGGAGCCAGGATGCAAATGATACGGAATTTTAAAAAATGGGTAGTTGAGTGAATGAATAAATGGA 4217
Query 250 ------------------------------ 249
Sbjct 4218 TGACCTGTTTACATCCTTTCTCATTTTTAA 4247
