Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10792
- Subject:
- XR_001746840.1
- Aligned Length:
- 6536
- Identities:
- 216
- Gaps:
- 6289
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGCTGGGATTACAGGCGTGAGCCACTGTGCCCAACCAGGTGTTCTTAAATATAATTTTTTATCTCCTTTCCTAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAAGAGGGGTTTTTAGAACTGTTTGCTTGGCAGGTGAAGAATCTGCACGTTGTGGTTCTTTATTACTGAATGAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAAATACCAGACTTTACCTTAGCTTTATTTGTTCCCCAGTTCAACGGAATTTAACCTTAGAATTTCCTAAAGAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCTTTCTAAAAGTTTTTTATTTCTCTAAGTGTCATAGTACTGCATTTATGAATCCCAAATTGGCTTCCACTGTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TATTTAAACTTGATATAAGATACAGGAAGATTATTTTGTCACCACCCTCTTTCTATTCCAAACACTATTTACAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAAGGAAACTTTAGTAAGAGAAGATATTTTGGAAAAGATTTTGTAACCAACTTACACTTGTGTCTGTTTTTGTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TTTTTTGGTTTAAATTCAAGGGGAGGCCAAGCGTGATGGCTCATGCCTGTAATCCTAACACTTCGGGAGGCCAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CACGGGTGGACCGCTTGAGCTCCGGAGTTCCAGAGGAGCCTGGGCAACATGGTGAAACCCTGTCTCTACCAAAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ATACAAAAACATTGCCCAGATGTGGTGGCATGCACCTGTGGTCCCAGCTATTTGAGAAGCTAAGCAGGTGAAGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCAGGGAGCAAAAAGAGGGAGTTGCCAGATTATTTCTACCTCCACGCCCTCCCTGCCTGTCAAGGACTGAGTCC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAGGAAGATGCCAGCTCCAGTGCTTTCCCGCTCTTGCCGTCTCAGGCCACTCTGGCTGGCCGCTGGGTCCCTCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACATCCCCTGTTGGTTCCTTTAGCCCAGCCTACACCGCTGGAAATAGGCCCTTTATGAGATTCTCTTCTAAATC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTAGAAGAGTGTACCCTCCATTTCCTGAAGAATCCTGACAAGTATGTAAACATTACTTAATAATTGTTAGGTAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAATACTATAAATATTAAATTTATAAGTAAATAAAAATATTTAATTTTACATAAGACAAAGCTAAAAATTTCAG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTTATAATTTTTAAACATAGACAATAAATTTCCCAGAAAGAAATTGCTGACTACCAACCAAATTTTCATTTTTA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTTTTTAAATGTTGGAAAAATTTTGTCAGAAAGATTCTTATCAACCAATCAAATTGTGTTAGCAGTTGTGTTAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TAGTCACAAGGAAAATAATCAGTCATATTAGTTTTCTTACTATTGTTCATATTTTGTCTTTCAAAAATAGGTGT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AATGTACAAATACTTCTTAATTAGATATGCTTAAATAAAACATTTCATATTGTATTGATTTGGGTATATTGTAG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AAAATAAAAAGTTCCTCTTCAAAGCTTCCCTTCTTGTTAAAGAATAAATCATAAGTGTTAGAATTAACAGTTTC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTTTAAAGACTAACTTTATGCTAGACATGCTCACAGACACGTAGTACATTCTATGTCCTCGTACTTTAACCAAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ATATCTGTGCTAGACGTGCACACAGGCATGTCTCAGCTCGCAGCCTATGCCCTTTCCTTATTTGGGAATGTTTA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTCCTTATTTGGAAATGTTATTACTTTTCTAAGTCCTTTCGTAAGCAACTTCATTTTTTTTCCTTTGTTTTTCT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATTGCCTTTACCTGTTTAAAAAAGTTTTAAACTGTTAGCCAATCGGGTTTTAGTTTAGATTGTGAGGTCTGGCT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CCAGCCAATGGAGACAGGACACAGTAGCAGGGACAAACTGGGTAAGGGATAAAAATTGCTTCGCTCCATTGTTC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CGGGGTGCTCTCGCCATTGTTCCAACTGCCATAAACACCCTTTCTGCAGAAAGCAAAAATGGCCTTGCTGAGAG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AATTAAATTTATGTTCGAGTGCTATTTCTTTGTGGCACTGGGGAACAAGCATTCTATTTCTAAATAAACATTTT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TACGTATAACAGTACTGAATATAACCATGGACTGTTTGCAAATTATATTGGAATCATGTAGACACAGCTTTAAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AATGGATAATATAATTATTACTTTTTCTAGCCAAAAATCAGGAGCAGACTATGTATACAAGTCTGGAATGGAGG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ACTTTCCATTCTAGAAGAAAGAGTGGCCATTTTCAACTCTTCTTCCTTTTGAGACCTCACTAAAATTAGAGGAA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CAGAATTTAAAAATACATTACATCTCCATGATAAAGAGAACAGGAAAGGAAATATCAACAGACAAGGGGATTTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ACAGATATTTTTGGAGGGAAGAAACGGTGGAGCAGAGGTAATTAAGCCGATTGGAGAGAGGCTGTCCTGCAGAC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CGAGTGAGACAAGGTCCTGGCACTGGAGAGGCTGCTGCCTGGATCCCTCCCCCAACACAAGAAATCAGGAAATC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACCACTCCTCTTGCCCCAGGCCAGAGACTAGGTTTCTGTAGACATGGAAGGTAGAGGCTGCGGACCTGGACCCC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AGACACAGGTGAGAGGAGAGGCTTTGCGCTAAAGAGAGAGAGAGAGAGAAAAGGAGGTGGGGAAGAAGAAAGGA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AAGAAAGGAGGAAGAGAGAAGGCCAGGCGCGGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCGAGGCG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAACACAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AAAATTAGCCGGGCGTGGTCGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAACGGCGTGA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 ACCCGGGAGGCAGAGCTTGCAGTGAGCCAAGATCGGGCCACTGCACTCCACCCTGGGTGACAGAGCGAAACAAC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GTCTCAGAAAAAAAGAAAGAAAGAAAGGAGGAAGAGAGAAAAGGAGCGTGGAAAGAAAAGAAAATTTCAGGAGC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TTCTACATTGGTTATGCCAGCAGAAACAGTTAAGCCATGGAAACTGAGTCACATACACGCTGTTTTTCTTCTCT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 GGTGCATGACCTTTGCTTCTGACCTTTGTGTTGAGATGTTATGAATTAACCACCCTTCCTATTCTTCATTCAAA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CCTCAACTAAATGACATTGGAGATAGAGACCCTTACCTCTTTACGATGGATGTTAAGTAACTCCCATAGAGTAT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AGTCAATGGTGGCCAGCCAACTTGTGTGTGTGTGTTTTATATCTTATATTTAAAAAATGAAAAAAATGTTGTAA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TTCTGGCCAGATACGTGGCTCACAACTGCAATCCCAGCACTTTGGGAGGCCAAGGTAGGCGGATCACTTGAGGC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CAGAAGTTCGAGACCAGCCTGGCCAACAGGGTAAAACTCTGTGTCTACTAAAAATACAAAAAATTAGCCAGGCG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GGCATGGTGGCGCACGCCTGTTATCCCAGCTGCTCGGATGACTGAGGCTTGAGAATCCCTTGAACCTGGGAGGT 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 GGAGTTTGCAGTGAGCCAAGATCATGCCACTGCCCTCCAGCCTGAGCAACAAAGCAAGACTTTGTCTCCGAAAA 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 AAAAAGAGCATGTTGTAATTCTGTTCAGCACCCCTGTTTTTTGCTTATATGAATGATCTTCACCTTTCCCCGCA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CTGAGGAGTGATGATCACCATTCTTTGGTGTCTGCTACCCTAACACTTGGCGCTTGAATAAACTCTTTTAAGTG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 GAGCCTGAGCCTTTTGATTATTTTAGGTTGACAGGAGGAAGGGAGGAAGGGTGGGTTAAAATTAAATCTGCATA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 CTAAGCAATAATATCCTTGCTGCTCTTCTTCAACTGTTTGTAGGTTATTTCTGCTCTCAGGCTTCTGTTCTACC 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 CCTAACTCTCCTGGCTACCCAAAGGCCGGAGGTTATCTACTGGGGAAATCTCAAAAGACTGTAGAAAAAATGTC 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 TCAAATTCTGGTTTTGGGAGTCTTCCAAAAAAAAATTTTTTTTAATTTGGCTTGCCTCTTGAATATCCTATAGA 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 GAAGTCCCAAACTGACAAACCTGGGCTGTCCTCCCAGATGCTCTACTGAGCTGTCAGTCTCTCCCTCTGGAATG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 GGAATAGAGCACCAAGCATAACCTGTTATTTGAAGAAAGGCTGCTACACTACACACGGACCCAAATGAACAAAT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 ATCAGGAGAACAGAAGTTAGGGGAAACAGAAGTGATGAAGAGAACAGAATAAAAGTTTTATTTTAAAATTATTA 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 TTATTATTATTATTATTATTATTATTTGAGACCAAGTCTCACTGTGTCGCCCAGGCTGGAGTGCAATGGCATGA 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 TCTTGGCTCACTGCAAACTCTGCCTTCTGGGTTCAAGCAATTCTTGTGCCTCAGCCTCCCAAGTAGCTGGGATT 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 ACAGTTACCCGCCACCAAGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGAC 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 TGGTCTCAAACTCCTGACCTCAAGTAATCCACCTGCCTCAGCATCCCAAAGCACTAGGATTACAGGCATGAGCC 4440
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4441 ACCGCACCTGGCCAGAATAAAACTTTTAATATCTTTTATTAACACCGCACCCAGCCAGAATAAAACTTCTAAAA 4514
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4515 TCTTTTATTACTATCATCAGATAAAATAAGACATTACATTCATGAAACAGAACAGGTATTAGAATATAAGAGAG 4588
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4589 AAGAAAATCCTCAAACAAAATTGTGGCAGCTGAACTAAAAACATCAAATAAGGATTGGAGTGTAATATTAAAGA 4662
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4663 AATTTCCCAGGAAGCAGAACAAAAAGAAAGTAAAATAGAAAAGGATAATAGAGCAAGTGCAATTAATTCAGAGA 4736
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4737 ATCAATCCAGAAGGCCCTGATACCTGACTGAATAGGGTTCCAGAAAGAGGAACAGAGAAAAAGGATGTGAAGAG 4810
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4811 TTGCATTGATAATAGTACTACTAACACTATTTTTTGTTCTTTGTCTTCAAGAAAACCTCTCAGAGTTGCAGTGT 4884
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4885 ATGAGTCTCTGGATTGAAAGGGCTCAATAGATGCCCAGCATAACGATGAAGAGGACCCACATCTAGACATATAT 4958
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4959 TGGCCTGAAATTTTCATGTATTTGGGATCAAGAGAAAATCCTGAAAGCTTGTAAATTAATGCTGTTCAATATGG 5032
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5033 TGGTCATTAGCCACGGCTGACTGTTCAGCACTGGAGATGTGGCCACTCTGAATGGAGATGTGCTGTAAGTGTAA 5106
Query 1 -------------------------------------------------------------------------- 0
Sbjct 5107 AATAGACACTGAATTTTGGTGGGCTCAGTAGAAAAAAAAAGAGTAAAATGTCTCATTAATATTTTTCATTTTGA 5180
Query 1 -------------------------------------------------------------ATGGAGTCTCGCT 13
||||||||||.||
Sbjct 5181 AAACATGTTGAAATGATTTTGTATATATATATTTTTTTTAATTAATTTTTTTTTTTTTGAGATGGAGTCTCACT 5254
Query 14 CTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTC 87
||.|.|||||||||||||||||||.||...||||.||||||||||||||||..||||||.|||||||||.||||
Sbjct 5255 CTATGGCCCAGGCTGGAGTGCAGTAGCGCAATCTTGGCTCACTGCAACCTCCACCTCCCTGGTTCAAGCAATTC 5328
Query 88 TTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCACCACCACGCCCGGCTAA-TTTTGTATTTTTGG 160
|.||||||||||||||.||||||||||||||..||.|||||.||||.|.||||.||||| ||||||||||||.|
Sbjct 5329 TCCTGCCTCAGCCTCCTGAGTAGCTGGGACTGCAGGCATGCGCCACTATGCCCTGCTAATTTTTGTATTTTTAG 5402
Query 161 TCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCA-CCACCTCGGCC 233
|.|||||||.||||..||||.||.|||||||||||||||||||||||||||| ||||||.| |||||||||||
Sbjct 5403 TAGAGACGGAGTTTCACCATATTGGTCAGGCTGGTCTTGAACTCCTGACCTC--GTGATCTACCCACCTCGGCC 5474
Query 234 TCCCAAAGTGTTGAGA---------------------------------------------------------- 249
||||||||||.||.||
Sbjct 5475 TCCCAAAGTGCTGGGATTACAGGCCTGAGCCACCACGCCTGGCCGAAATAATATATTTTTTAAACATTGGGCTA 5548
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5549 AATATAACATATTATTACAACTACTTCCAGTTGTTTCTTTTTATTTTAAGGTGGCTCCTGGAAAATTTTAGATG 5622
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5623 ACATAGACGGTTTCTGTTCTGTGTCTGTTAGACGGTGCTCTGCAGAGAAGCAGACAGGTCATGCATAAGGACAC 5696
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5697 TGAGGCCAGAATGATATCTGACCTTCAGCAGCAGCTCTAGGAAACTGAAGAAAAATGATCCCCCTATTCAGAGA 5770
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5771 GAAATAGTTTTCAACCTTAGTAGTCTACATTCTGGCAAACTTTCAGTCAACTGAAAGACAGTTAGAGACATGCA 5844
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5845 AGCACACAAAAGTTTACCTTCTTTGCTGTCTCCTTGAACGTTCCTGAAGGAAGTACCCCAGGAAATAAACTTGT 5918
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5919 AAACCAATGGCATGGAAGGCATGGGATTTAAAAGCAGGATGTCCAGTATAGGACTCGGAGCAAGTTGTGCAGCA 5992
Query 250 -------------------------------------------------------------------------- 249
Sbjct 5993 GGTCCAGGAAGCAGACAAGCCCGTGCAGAACAGGAAGTCAGGGGGCTCAGTGGGAAGTCATGGCACCAGTGGAT 6066
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6067 TTGCTGACATAGGGAGTCTTCTGGCTCATTGGAAGACACGTATGTAGACAACAAAGTTATTTTTTGAGAGGTGA 6140
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6141 TAATTTAAGAAAAAAGTTGTACTCTTCCTGGCTCATGTGAACAGTATCTATATGACACAAATAATAATGTGAAC 6214
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6215 TCAAAGACTGTGTGGTATGCTTACACCAGGGGAATGGGGGAGGGAGAGCAAAGTGCACTTGAGTTAGATAACAT 6288
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6289 CTGTCAAGACAGGGAGAAAAAAGATAATGTCTAAAATAAATAACAGCACATGCATACTCCTTAGGAATTGGAAG 6362
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6363 GTAAATGGCAGAAGAAATGGCTTAACAATTTGTACGTGGTTTCTTGTGACTTCTTATGACTGTATAAGACCAGG 6436
Query 250 -------------------------------------------------------------------------- 249
Sbjct 6437 GAGCAATAGGGAGGGGAGGCACAAGGGATGCTATTTTGTTTCTATTACTATTTGATTTTGTAAAACTATACACA 6510
Query 250 ------------------------ 249
Sbjct 6511 TCAATTAAAATGATAAATATTATA 6534
