Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
XR_001749100.1
Aligned Length:
3884
Identities:
217
Gaps:
3635

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CAGAGCCCCGCCGGGGCCGAAGGAGCGAGGGAGTTGCATTGTGGGAAGGGCGCAGCATGAGGATGGCCGCGGGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTGGCAGGTCCGAGCGCAGCCCGGAGAGCCGCGGGCAGCGCCTGGGACTACGGGCAGCGTTGGAGCGGAGGGCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGCCCTGGGCACAGCCTGCAGATGGCCCGGGTTGGCGGGAAGGGGACCGAAGTGGCAGGGGCGGCGGGGAGCTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGGCACCTTTAAAAACCCTTTGTCCCTAACCTGAAGCGGGAGGCACCTCCCCTCTTCCGGATCCAGCACCCGCA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GACCTGGTCAGCCCTTCCTGAGATCTGCCCTGTGGAGCTCTGCTTTGGGGACTGGGTGTGAGGTGAACCAGAAG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GATTTGCTGAGCACCGAGAAAGCACCGGCCTAGGCGCAAAGAGCCGGGGGCCAGCTCTTGGAGGGCCTGGAGAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCCACGTGGTCCCGACCGAAGGACCTGTGGACATCCAAAGGTGATACAGCTGGAAAAAGGATCTTCATCCAAGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CAAAGAGAAACAAAGTCGATAGGAAAGTGATGAAAGGCATCAAGCAAAGTGAAGATGCAAATGAGAAAACAAGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TCAGAAGACAGGAATATCTGAAACAAGTCACAAATGCATAGTATGACCTCTCAGGTAAGGACCAGGGCTGGATC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ATCCCAGGATGTTCAAGGCATACTCTCAGGGGGCGCTGTGTTATACTGAGATCTTGCTAGGCAAAAACATGGTT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TTTGTCTTTTCTGTTGAAAAGGTACCTTTTGGGAGGCCAGGCGCGGTGGCTTACTCCTGTAATCCCAGCACTTT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GGGAGGCTGAGGCGGGCGGATCACCTGAGGTAGGGAGTTCAAGACCAGCCTGACCAACATGGAGAAACCCCTTC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TCTACTAAAAATACAAAATTAGCCAGGTGTGGTGGCACATGCCTGTAATGCCAGCTACTTGGGAGGCTGAGGCA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGAGAATCGTTTAAACTCAGGAGGTGGAGGTGGCGGTGAGCCGAGATCATGCCATTGCACTCCAGCTTGAGCAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AAAGAGCAAAATTCCGTCTCAAAAAAAAAAAAAAAAAAGAAAGAGAAAGAAAGAAAAAGAAAAGAAAAGGTACC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TTTTGGGAAGAAGCATTAAAAAAATTTTTTTTTTCCGCTGGCAGTATTTAGGAAGAAGAATTCTATTTATTACT  1184

Query    1  -------------------------------------------------------------------ATGGAGT  7
                                                                               |..||||
Sbjct 1185  TCAGTAGAGTAACATGCTTTACTAAAATAAGCTTCCATTCTACATGGTTTTTTTTTTTTTTTTTTAGACAGAGT  1258

Query    8  CTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAG  81
            |||.||||||||||||||||||||||||||||...|||||||||||||||||||||||||||||..|||||.||
Sbjct 1259  CTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCGAG  1332

Query   82  CGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCACCACCACGCCCGGCTAA-TTTTGTAT  154
            .|.||||.||||||||||||||.|||||||||||||||.||...|.|||||||||.||||||||| |||||||.
Sbjct 1333  TGTTTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGAGTACACCACCACACCCGGCTAATTTTTGTAA  1406

Query  155  TTTTGGTCGAGACGGGG-TTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACC-AC  226
            ||||.||.||||||||| |||..||||.||.|||||||||||||.|||||||||||||||.|||||||||| .|
Sbjct 1407  TTTTAGTAGAGACGGGGATTTCACCATATTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCTGC  1480

Query  227  CTCGGCCTCCCAAAGTGTTGAGA---------------------------------------------------  249
            ||.||||||||||||||.||.||                                                   
Sbjct 1481  CTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAACCACTGCGCCTGGCCCATGATTGTTCTTAAAATAAGAA  1554

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1555  ACACCACATAATATTCAGTGTTCCTTATTTTGAAGGGCTCTTTATTTGGTTATATTTTAGGCATATGAAGCTAT  1628

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1629  TTCATAATCCCAAAAGGGGTATTTAATGAGATTTAGAATTGATAGTCTTCTGTTGATATATATTTATAGTTATT  1702

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1703  TATACACATATTTGTATGTTCTTAAAATAAAATGTTCAAAGTTTTTGATTCAAATGTAACATGTCTAAAATTGA  1776

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1777  AATCATTGTTTTTTTGTTTTTTTTTTTTCACAACTCAAACCCTCTTCTTTTCCCATAAACACCATATTGGGAAA  1850

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1851  TGGCACCACCATGGGCATAGTTGCTCAAGCTAGAAGGATGGGGGTATTTTGGCTCATCCCCTTCACTCTTCACA  1924

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1925  TCTAATTAATTCCCTCTTTTGAGTAACATTTACTAAGTGCCAGGCCTTCTGCTAGTCTTTCGTGAAGCTTGGAG  1998

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1999  TTAGAGTGAGAGACCGATATTACTCAAATGATCTTGCCAGTGAATGTACAAGTTACAGGTGGAGATAAGTGCTC  2072

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2073  TGCAGAAAGGAGCATGACTCTTGTGAGAGAAACAGAAGACCATGTTCTGAACTGGGAATCAAGGAAGACTTCCC  2146

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2147  TGAGGACGTGACCCTTGTTTGGACTCTATTCTGTTTATGCTAAGGATTTTAATAAGGAGCAGGTGATGGACATG  2220

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2221  ATCCAGCGTACATTTTTAGAGGAATATCATGAGTCCTATCACTTCATCTCCTAAATATTTCTGACATCTGTTCT  2294

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2295  CTTTCCTCCATCCTCACGACCTTCACTGGCATGGGCCTCCAACAGCTCACTGTGGGGGAAGTTTCCCTCAAAGG  2368

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2369  GCACTGATAACACATCTTATTAAAACTATACCACATCATTATACCTCCCCAACATAATATGTACATGTATGTAT  2442

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2443  TTGACAATAATATATATGTATTACTGTCCTATTTATTATATACATTAAAAACATTCACAAAAAATTAAAAATCC  2516

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2517  AAATGGTAAGATTTTACATTTTTGATTTGATAACAATACTTTATTATATTACTAAACATATATTCCTAATTGTC  2590

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2591  ACTAAGATATTATCATGTTAGAGAAATTTGCTTCACTATACTATATCATTTTTTTAAATCTTAGTTTAATACTC  2664

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2665  TCTGATACAGCAATTCACAAGTCTACTTCCAACTCTGGCTTATTTTGATTCTTTCATGTAATGGCTGTCATAGC  2738

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2739  TGAAAAGGGACCTCACAGAGACCCAATGGAGGCAGTGTCCTATTGGCTATACTTCCCAAATCAAGCCATTCATT  2812

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2813  TCTCAATCCCATTCACTAATTTACAGAGATTTACTTATTTTTCATTGCTAGTCTGCAAATGTACACTTAAATGA  2886

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2887  AGGTCATCCTTAATAATTATGAATGTGAACCCATGAAACCTACTTCATAATTCTGAATTTGTTTTGACAGATTC  2960

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2961  TTTTCCACAGTTAGAGGGCCATTGCTATACCTGACATTGTGGCTGACAAAAGAGCTCTTATTAGGACTGGAAGT  3034

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3035  GTCAGTTCTACTTTTTCTTCTTTCTTTATGCTCATGTTATTATTATTTTTTAAATCTGAAGTTTAGAGGAATCT  3108

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3109  TTTAACTCTACTTGTCTATTTGGGAAGACACACTAAACTAGATAATATAATTTATAAATTCCCTCAACTAAGCA  3182

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3183  CACAGAACTGTAATACATTGAAATCTGCCAAAGAGAACAAATCAGTGAGGGCACGACTGTATTCCTTTGTGTCT  3256

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3257  TTTTCAAGACACCTTGAGTACTGTAAGTGACAGGGAGCCATCTGATGTACAGGCTGAAGGGGGCCACCATCAAC  3330

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3331  CTAGTAACCTAAACAGAAGTTCCAATATTTTCACCCTGCAGTCCACTTTGTAACCTTTTCTTAGCCTTCCACAA  3404

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3405  GAGTCTCCTAACTGGACTCCCTCCATCCACTTCTGGGCACCTAATGTCTCTACTACAGATTAGAAATTACTTTC  3478

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3479  ACAGAAGGCCATTTCTGAAACCCAAACTAGCTTATGTGTTACCCTACATTGAAATTATTCAGACGCTGTCTTCC  3552

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3553  CCAGTAATCTGCAAGTTTCACAAAGGTAGATGCCATGTTCTTAATGGTTTCCCAGCACATAGCACATAACAGAA  3626

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3627  GCTCAATAAATATTTGTTGAATGAATAAATGAGTAAACAGAATATTTTTACAGTTAAATACCTTTAATTCTTTT  3700

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3701  ATTTTTTTTAAATTTCAAGTCCTTAGAGGAGGAAGAATTGAAAAAATATGAAATATCAAATATACATTTAGCTA  3774

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3775  AATTTTTAAAGTTTAGTAGGCTATATGCATAAATCAAATGAATAGCAATATTTGGAACTGTAACTATTTTTGGA  3848

Query  250  ------------------------------------  249
                                                
Sbjct 3849  ATCTTGTATGAATAAATTACAAGTTTAAAACATCAA  3884

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.