Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10792
- Subject:
- XR_001749584.2
- Aligned Length:
- 4613
- Identities:
- 217
- Gaps:
- 4365
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTACGCCGCTGATGTGGAGTAGGGCCGAGCGCGGAACGCGAGGGGCTGCTGGGGTGTTTGTCGCAGCGGGTTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCTCGGCGGTTTGCGGAGCTGCTAGGATGGAGCAGGTTGCGGAGGGAGCAAGGGTGACCGCAGTCCCTGTGTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCTGCCGACAGCACTGAGGAGTTGGCCGAAGTCGAAGAAGGAGTTGGAGTAGTGGGCGAAGATAATGACGCAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCGCGAGAGGAGCGGAGGCCTTTGGCGACAGTGAGGAGGACGGAGAGGATGTGTTCGAGGTGGAGAAGATCCTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GACATGAAGACCGAGGGGGGTAAAGTTCTTTACAAAGTTCGCTGGAAAGGCTATACATCGGATGATGATACCTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGAGCCCGAGATTCACCTGGAGGACTGTAAAGAAGTGCTTCTTGAATTTAGGAAGAAAATTGCAGAGAACAAAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCAAAGCAGTCAGGAAGGATATTCAGAGACTATCCTTAAATAACGACATATTTGAGGCGAACTCTGATAGCGAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CAGCAAAGTGAGACAAAAGAAGATACTTCCCCAAAGAAGAAAAAGAAAAAATTGAGGCAGAGAGAAGAGAAAAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCCAGATGATCTGAAAAAGAAAAAAGCAAAGGCCGGGAAGCTAAAAGACAAGTCCAAACCAGACCTGGAGAGCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCTTGGAAAGTTTAGTTTTTGATTTAAGGACAAAGAAAAGAATTTCTGAAGCCAAAGAAGAACTAAAGGAGTCC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAAAAGCCCAAAAAAGATGAAGTAAAAGAAACAAAAGAATTAAAGAAAGTTAAAAAGGGTGAAATAAGAGATTT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAAGACGAAAACAAGAGAAGATCCCAAAGAAAATAGAAAAACAAAAAAAGAAAAATTTGTCGAATCCCAGGTGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AATCTGAATCAAGTGTACTTAATGATTCTCCCTTTCCAGAGGATGACAGTGAAGGGCTACATTCCGACAGCAGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GAAGAGAAACAAAACACTAAAAGTGCAAGAGAGAGAGCAGGGCAGGACATGGGGCTGGAGCATGGCTTTGAGAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCCCCTAGACAGTGCCATGAGTGCTGAGGAGGATACCGATGTCAGAGGCAGGAGGAAAAAGAAGACCCCGAGAA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGGCTGAGGACACTAGAGAGAACAGGAAGCTAGAGAACAAGAACGCTTTCTTAGAGAAGAAAACTGTGCCTAAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AAGCAGAGGAATCAAGACAGAAGCAAAAGTGCTGCAGAGTTAGAGAAGCTGATGCCTGTATCTGCCCAAACGCC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AAAGGGCCGGAGGTTGAGCGGGGAAGAGAGAGGCCTCTGGTCCACGGACTCAGCCGAGGAGGACAAAGAAACCA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AAAGAAATGAATCCAAAGAAAAATATCAGAAAAGGCATGATTCTGACAAGGAAGAAAAAGGCAGAAAAGAGCCA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AAAGGATTAAAGACACTTAAGGAAATCAGAAATGCATTTGATTTATTTAAATTAACTCCAGAAGAAAAAAATGA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TGTTTCTGAGAATAATCGGAAAAGGGAAGAAATACCACTGGATTTTAAAACCATAGACGATCACAAAACCAAGG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AAAACAAACAGTCACTTAAAGAAAGGAGAAACACCAGAGACGAAACGGATACTTGGGCATACATTGCTGCAGAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GGTGATCAGGAGGTTTTAGACAGCGTGTGCCAAGCAGATGAGAATTCAGATGGCAGGCAGCAGATTCTGAGTTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GGGCATGGACCTGCAGTTGGAATGGATGAAGTTGGAAGATTTCCAAAAGCACCTTGATGGGAAAGATGAGAATT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTGCTGCAACAGATGCAATTCCAAGTAATGTGTTAAGGGATGCTGTGAAAAATGGGGATTATATTACTGTAAAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GTTGCACTTAATTCAAATGAAGAATATAACCTGGACCAAGAGGATTCCAGTGGAATGACACTGGTGATGCTTGC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CGCCGCCGGAGGGCAGGACGACCTCCTGCGACTCCTCATCACAAAAGGCGCGAAAGTGAACGGTCGGCAGAAGA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ACGGGACCACCGCCCTCATTCATGCTGCAGAGAAGAACTTTTTAACAACAGTGGCTATTCTTTTGGAAGCAGGA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GCTTTTGTAAATGTCCAGCAAAGCAATGGTGAGACTGCACTGATGAAGGCCTGTAAAAGAGGAAATTCAGACAT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CGTACGACTCGTAATTGAATGTGGAGCTGACTGCAATATTTTGTCAAAGCACCAGAATAGTGCCCTGCACTTTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CGAAGCAGTCTAACAATGTGCTTGTGTACGACTTGCTGAAGAACCATTTAGAGACACTTTCAAGAGTAGCAGAA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GAGACAATAAAGGATTACTTTGAAGCTCGCCTTGCTCTGCTAGAACCAGTTTTTCCAATCGCATGTCATCGACT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTGTGAGGGTCCAGATTTTTCAACAGATTTCAATTACAAACCCCCACAGAACATACCAGAAGGCTCTGGCATCC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TGCTGTTTATCTTCCATGCAAACTTTTTGGGTAAAGAAGTTATTGCTCGGCTCTGTGGACCGTGTAGTGTACAA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GCTGTAGTTCTGAATGATAAATTTCAGCTTCCTGTTTTTCTGGGTCTCGCTCTGTTGTCCAGGCTGGAGTGCAG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TGGCGCGGATTACAGCTCACTGGAGTCTTGACTTCCCAGGCACAAGCAATCCTCCCACCTCAGCCTCCTAACTA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CCTGGGACTAAAAATGCACGCCACCACATCCGGCTAATTTTTTGTATTTTTTGTAGAGATGGGGTTTCACCATG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TTGGCCAGGCTGGTCTCAAACTTCTGGGCTCAAGCGATTGTCCGCCTTGGCCTCCTCCACAACATCTTGACTTA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TGAAATAAAAAATAAAACTTATTTATGATTCTTTTACATCATTGGTGTTTTAAGGGCTTCTGGTGTAAGTTTGA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AAACACTGACTTTTTTTTTCTCTTTCCATTGTAGGACAGTCATTTTGTTTACTCATTCAGCCCTGTTGCAGGTC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CCAATAAACTCTTCATAAGGTTGACAGAAGCACCCTCTGCCAAGGTTAAGTTGCTAATAGGTGCATACAGAGTG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CAGCTGCAGTGACCAAACAGAAGGGACTGGGCGGAGTTCTCTTCAGACCGATTCCTATACTCTCTTTGACAGCA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 GTTTGGAATTCTTCTAGCACATCTATGTAAAGTTTTGTCTGTAAACCTCTTGCAGTTAAGCCTGTTGTCTGTTG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TAGTCTGTAAGATGCGACATAGCTGTGTCTGTGCCAGTATGCCGGAATCTCAGTGCAGTGTCCAGACTGCGTAT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TTCAGTTTTTCCACAATGTGGATAGTACATATGAGGATTATTTAAGAAAATTAAAGACTTCACTTTCTTTTTTC 3330
Query 1 -----ATGGAGTCTCGCTC-TGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCC 68
|.|||||.|||||| |||||||||||||||||||||.|||...||||||||||||||||||.|||||||
Sbjct 3331 TGGAGACGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGTGCGATCTCGGCTCACTGCAAGCTCTGCC 3404
Query 69 TCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCACCACCACGCCCGG 142
|||..||||||||.||||||.||||||||||||||.||||||||||||.||.|||||..|.|||...|.|||.|
Sbjct 3405 TCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGACACCCGCCATGGCACCCAG 3478
Query 143 CTAATTTTGTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGT 216
||||||||||||||||.||.||||.|||||||..|||||||.|||||||||||||||||||||||||||||.||
Sbjct 3479 CTAATTTTGTATTTTTAGTAGAGATGGGGTTTATCCATGTTGGTCAGGCTGGTCTTGAACTCCTGACCTCAGGT 3552
Query 217 GATCC-ACCACCTCGGCCTCCCAAAGTG-TTGAGA--------------------------------------- 249
||||| .||.|||||||||||||||||| ||| ||
Sbjct 3553 GATCCGCCCGCCTCGGCCTCCCAAAGTGCTTG-GATTACAGGCATGAGCCACCGCACCCAGCAAGAGTTATTTT 3625
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3626 CTTAACTTGAAATTTTCTACTAGCCCTGGTGAACTTCTGTGCTTAAAAAAAAAAAAAAAAAAAGGAAAAATTCA 3699
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3700 GCTCTAAAACATTTGCTTACAGCAAGGGAGCCATGTTATATTCAAGTTACCCAAGCACCAAATAAAGTGTGGGT 3773
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3774 TTGCTGCCCTTGAAAGGGTTGGGAGGCCTGATCTTTTTCTAGTAGACAGTTGCCACACATTCCCCAAGCACAAA 3847
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3848 AGGTGGAGATGGCAGTCACTTTGTAAATATGCTGTAGTCACTTATCATCTTTTCAAAGGGTAACAAGAGAATCT 3921
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3922 AAGATGTAGTAAGAATGTAAACCAGTACACTATGAGACCTAAAAGAGAGTATTAAATGTGAACTTTTAGCAGAG 3995
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3996 CGTGGTGGCTCACACCTATAATCCCAGCGCTTTGGAGGCTGAGGTTGGAGGATTGCTTAAGTCCAGGAGTTCAA 4069
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4070 GACCAGCCTGGGTAACATGGGGTGGAACAAGCCTGTAGTCCCAGATACTCAGGAGGCTGAGGTGAAAGGATTGC 4143
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4144 TTGAGCCAGGGAGGTCAAGGCTGCAGTGAGCCGTGAAAGGCCACTGCACTCCAGCCTGAGTGACAGAATGAGAC 4217
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4218 CTTGTCTCAAAAAAAAAAAAAAGTTTCTTGGAACCTATACGGTTTTTTTTTGTTTTTTTTTTTTGAAAAGCCAG 4291
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4292 ACCTTGTGCCCTTGTTTTGAACACCGACTGGGAAGATGGGGCTTAGGTAACAGCCAAACCTGGCTGTCAGCTGT 4365
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4366 GTGGGAGCCACCACCCTCTCTGGGAAGAGTTCCTGCTTCTGTATGGCAAGCATAAATCAAGCTCAGTCTGGGTT 4439
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4440 ATGGAGAAGTTGAAAATTGTTTTGTTCCTCATTAGTTTATAATTGTATGAAATACGATTTTAATGAAAACTTTT 4513
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4514 CAGAATTCACGTTTGTGTAGATATTTCAGAGAACCATTTTTACTTTACATCCTAAAACTGCCTTTTCCTATGGT 4587
Query 250 ------------------------- 249
Sbjct 4588 TTTGTCAATAAAACACTATGATGTT 4612
