Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10792
- Subject:
- XR_001749585.2
- Aligned Length:
- 4420
- Identities:
- 217
- Gaps:
- 4172
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTACGCCGCTGATGTGGAGTAGGGCCGAGCGCGGAACGCGAGGGGCTGCTGGGGTGTTTGTCGCAGCGGGTTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCTCGGCGGTTTGCGGAGCTGCTAGGATGGAGCAGGTTGCGGAGGGAGCAAGGGTGACCGCAGTCCCTGTGTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCTGCCGACAGCACTGAGGAGTTGGCCGAAGTCGAAGAAGGAGTTGGAGTAGTGGGCGAAGATAATGACGCAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCGCGAGAGGAGCGGAGGCCTTTGGCGACAGTGAGGAGGACGGAGAGGATGTGTTCGAGGTGGAGAAGATCCTG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GACATGAAGACCGAGGGGGGTAAAGTTCTTTACAAAGTTCGCTGGAAAGGCTATACATCGGATGATGATACCTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGAGCCCGAGATTCACCTGGAGGACTGTAAAGAAGTGCTTCTTGAATTTAGGAAGAAAATTGCAGAGAACAAAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCAAAGCAGTCAGGAAGGATATTCAGAGACTATCCTTAAATAACGACATATTTGAGGCGAACTCTGATAGCGAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CAGCAAAGTGAGACAAAAGAAGATACTTCCCCAAAGAAGAAAAAGAAAAAATTGAGGCAGAGAGAAGAGAAAAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCCAGATGATCTGAAAAAGAAAAAAGCAAAGGCCGGGAAGCTAAAAGACAAGTCCAAACCAGACCTGGAGAGCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCTTGGAAAGTTTAGTTTTTGATTTAAGGACAAAGAAAAGAATTTCTGAAGCCAAAGAAGAACTAAAGGAGTCC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAAAAGCCCAAAAAAGATGAAGTAAAAGAAACAAAAGAATTAAAGAAAGTTAAAAAGGGTGAAATAAGAGATTT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAAGACGAAAACAAGAGAAGATCCCAAAGAAAATAGAAAAACAAAAAAAGAAAAATTTGTCGAATCCCAGGTGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AATCTGAATCAAGTGTACTTAATGATTCTCCCTTTCCAGAGGATGACAGTGAAGGGCTACATTCCGACAGCAGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GAAGAGAAACAAAACACTAAAAGTGCAAGAGAGAGAGCAGGGCAGGACATGGGGCTGGAGCATGGCTTTGAGAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCCCCTAGACAGTGCCATGAGTGCTGAGGAGGATACCGATGTCAGAGGCAGGAGGAAAAAGAAGACCCCGAGAA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGGCTGAGGACACTAGAGAGAACAGGAAGCTAGAGAACAAGAACGCTTTCTTAGAGAAGAAAACTGTGCCTAAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AAGCAGAGGAATCAAGACAGAAGCAAAAGTGCTGCAGAGTTAGAGAAGCTGATGCCTGTATCTGCCCAAACGCC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AAAGGGCCGGAGGTTGAGCGGGGAAGAGAGAGGCCTCTGGTCCACGGACTCAGCCGAGGAGGACAAAGAAACCA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AAAGAAATGAATCCAAAGAAAAATATCAGAAAAGGCATGATTCTGACAAGGAAGAAAAAGGCAGAAAAGAGCCA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AAAGGATTAAAGACACTTAAGGAAATCAGAAATGCATTTGATTTATTTAAATTAACTCCAGAAGAAAAAAATGA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TGTTTCTGAGAATAATCGGAAAAGGGAAGAAATACCACTGGATTTTAAAACCATAGACGATCACAAAACCAAGG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AAAACAAACAGTCACTTAAAGAAAGGAGAAACACCAGAGACGAAACGGATACTTGGGCATACATTGCTGCAGAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GGTGATCAGGAGGTTTTAGACAGCGTGTGCCAAGCAGATGAGAATTCAGATGGCAGGCAGCAGATTCTGAGTTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GGGCATGGACCTGCAGTTGGAATGGATGAAGTTGGAAGATTTCCAAAAGCACCTTGATGGGAAAGATGAGAATT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTGCTGCAACAGATGCAATTCCAAGTAATGTGTTAAGGGATGCTGTGAAAAATGGGGATTATATTACTGTAAAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GTTGCACTTAATTCAAATGAAGAATATAACCTGGACCAAGAGTAGAGACGGGGTTTCACCATGTTAGCCAGGAT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GGTCTCGATCTCCTGACCTTGTGATCTGCCTGCCTCCGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GCGCCTGGCCACGTATGGATTTTTTTAATGGAAGCATATTGACCCTTTCTCCCTAGATTTTAGGATTCCAGTGG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AATGACACTGGTGATGCTTGCCGCCGCCGGAGGGCAGGACGACCTCCTGCGACTCCTCATCACAAAAGGCGCGA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AAGTGAACGGTCGGCAGAAGAACGGGACCACCGCCCTCATTCATGCTGCAGAGAAGAACTTTTTAACAACAGTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GCTATTCTTTTGGAAGCAGGAGCTTTTGTAAATGTCCAGCAAAGCAATGGTGAGACTGCACTGATGAAGGCCTG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TAAAAGAGGAAATTCAGACATCGTACGACTCGTAATTGAATGTGGAGCTGACTGCAATATTTTGTCAAAGCACC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AGAATAGTGCCCTGCACTTTGCGAAGCAGTCTAACAATGTGCTTGTGTACGACTTGCTGAAGAACCATTTAGAG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 ACACTTTCAAGAGTAGCAGAAGAGACAATAAAGGATTACTTTGAAGCTCGCCTTGCTCTGCTAGAACCAGTTTT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TCCAATCGCATGTCATCGACTCTGTGAGGGTCCAGATTTTTCAACAGATTTCAATTACAAACCCCCACAGAACA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TACCAGAAGGCTCTGGCATCCTGCTGTTTATCTTCCATGCAAACTTTTTGGGTAAAGAAGTTATTGCTCGGCTC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TGTGGACCGTGTAGTGTACAAGCTGTAGTTCTGAATGATAAATTTCAGCTTCCTGTTTTTCTGGACAGTCATTT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGTTTACTCATTCAGCCCTGTTGCAGGTCCCAATAAACTCTTCATAAGGTTGACAGAAGCACCCTCTGCCAAGG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TTAAGTTGCTAATAGGTGCATACAGAGTGCAGCTGCAGTGACCAAACAGAAGGGACTGGGCGGAGTTCTCTTCA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GACCGATTCCTATACTCTCTTTGACAGCAGTTTGGAATTCTTCTAGCACATCTATGTAAAGTTTTGTCTGTAAA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CCTCTTGCAGTTAAGCCTGTTGTCTGTTGTAGTCTGTAAGATGCGACATAGCTGTGTCTGTGCCAGTATGCCGG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 AATCTCAGTGCAGTGTCCAGACTGCGTATTTCAGTTTTTCCACAATGTGGATAGTACATATGAGGATTATTTAA 3108
Query 1 ----------------------------------ATGGAGTCTCGCTC-TGTTGCCCAGGCTGGAGTGCAGTGG 39
|.|||||.|||||| |||||||||||||||||||||.|||
Sbjct 3109 GAAAATTAAAGACTTCACTTTCTTTTTTCTGGAGACGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGG 3182
Query 40 CCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTG 113
...||||||||||||||||||.||||||||||..||||||||.||||||.||||||||||||||.|||||||||
Sbjct 3183 TGCGATCTCGGCTCACTGCAAGCTCTGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTG 3256
Query 114 GGACTATAGACATGCACCACCACGCCCGGCTAATTTTGTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTC 187
|||.||.|||||..|.|||...|.|||.|||||||||||||||||.||.||||.|||||||..|||||||.|||
Sbjct 3257 GGATTACAGACACCCGCCATGGCACCCAGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTATCCATGTTGGTC 3330
Query 188 AGGCTGGTCTTGAACTCCTGACCTCAAGTGATCC-ACCACCTCGGCCTCCCAAAGTG-TTGAGA---------- 249
||||||||||||||||||||||||||.||||||| .||.|||||||||||||||||| ||| ||
Sbjct 3331 AGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTTG-GATTACAGGCAT 3403
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3404 GAGCCACCGCACCCAGCAAGAGTTATTTTCTTAACTTGAAATTTTCTACTAGCCCTGGTGAACTTCTGTGCTTA 3477
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3478 AAAAAAAAAAAAAAAAAAGGAAAAATTCAGCTCTAAAACATTTGCTTACAGCAAGGGAGCCATGTTATATTCAA 3551
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3552 GTTACCCAAGCACCAAATAAAGTGTGGGTTTGCTGCCCTTGAAAGGGTTGGGAGGCCTGATCTTTTTCTAGTAG 3625
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3626 ACAGTTGCCACACATTCCCCAAGCACAAAAGGTGGAGATGGCAGTCACTTTGTAAATATGCTGTAGTCACTTAT 3699
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3700 CATCTTTTCAAAGGGTAACAAGAGAATCTAAGATGTAGTAAGAATGTAAACCAGTACACTATGAGACCTAAAAG 3773
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3774 AGAGTATTAAATGTGAACTTTTAGCAGAGCGTGGTGGCTCACACCTATAATCCCAGCGCTTTGGAGGCTGAGGT 3847
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3848 TGGAGGATTGCTTAAGTCCAGGAGTTCAAGACCAGCCTGGGTAACATGGGGTGGAACAAGCCTGTAGTCCCAGA 3921
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3922 TACTCAGGAGGCTGAGGTGAAAGGATTGCTTGAGCCAGGGAGGTCAAGGCTGCAGTGAGCCGTGAAAGGCCACT 3995
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3996 GCACTCCAGCCTGAGTGACAGAATGAGACCTTGTCTCAAAAAAAAAAAAAAGTTTCTTGGAACCTATACGGTTT 4069
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4070 TTTTTTGTTTTTTTTTTTTGAAAAGCCAGACCTTGTGCCCTTGTTTTGAACACCGACTGGGAAGATGGGGCTTA 4143
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4144 GGTAACAGCCAAACCTGGCTGTCAGCTGTGTGGGAGCCACCACCCTCTCTGGGAAGAGTTCCTGCTTCTGTATG 4217
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4218 GCAAGCATAAATCAAGCTCAGTCTGGGTTATGGAGAAGTTGAAAATTGTTTTGTTCCTCATTAGTTTATAATTG 4291
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4292 TATGAAATACGATTTTAATGAAAACTTTTCAGAATTCACGTTTGTGTAGATATTTCAGAGAACCATTTTTACTT 4365
Query 250 ------------------------------------------------------ 249
Sbjct 4366 TACATCCTAAAACTGCCTTTTCCTATGGTTTTGTCAATAAAACACTATGATGTT 4419
