Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
XR_001755380.2
Aligned Length:
5217
Identities:
217
Gaps:
4969

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGTGTCCAGGAGTCTCTCTGCTGCCAGCCCCGCCCAGACTCCAGGCAGGTTCTCGTTGCTATGGTGATCGCCGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGCAAGCTGGATGCTTGGACGCGCCGCTGCCAGTCCAACGCAGACCCCGCCCACGACGTCGACGATTCGTGTAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCGCAGGTCCCGCGTGGCTCTCGTTGCCATGGTGATCGCCGCCGCTGGCTCAGGCGGACCAGGCCGCGCGGAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCCCAGCTTTCACAGCCATCGCTGACTGGGAGCAGGAGACCCCTCCCCACTCTACTTCCACTGCCTGAGCTGTG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCATGCCTCACAGCCCAGTAAGGACTGTGGAAGAATGAGGTCCTCCCTGACACCTTTGGGGCCCCCTGTGAGCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GCGACCGTGTCATCGCCAGCTTCCCTAAGTGGTACACGCCGGAAGCCTGTTTGCAGCTCAGGGAGCACTTCCAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GGGCAGGTCAGCGCTGCCTGCCAACGCAGGAACACGGGGACTGTCGGGCTCAAACTCTCCAAGGTGGTGGTGGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TGGCGATCTCTACGTGGGGAAGACCAGCCTCATCCACAGGTTTTGCAAGAATGTTTTTGATCGAGACTACAAGG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCACCATTGGGGTGGACTTTGAAATTGAGCGCTTTGAGATTGCTGGGATTCCCTATAGCCTCCAGATCTGGGAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  ACAGCTGGGCAGGAGAAGTTCAAGTGCATCGCATCTGCCTACTACCGGGGTGCCCAGGTGATCATCACGGCCTT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TGACCTCACTGACGTGCAGACCCTGGAGCATACCAGGCAGTGGTTGGAGGATGCTCTGAGGGAGAACGAGGCAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCTCCTGCTTCATCTTCCTCGTGGGAACCAAGAAGGACCTTCTGGGGCCGCATGTGAGCAGGCCGAAGCAGACG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CTGTGCACCTGGCCAGGGAGATGCAGGCCGAGTACTGGTCAGTGTCGGCCAAGACTGGCGAGAACGTGAAGGCA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TTCTTCAGCCGCGTAGCCGCCCTGGCATTCGAGCAGTCGGTGCTGCAGGACCTGGAGAGGCAGAGCAGTGCCCG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GCTCCAGGTCGGCAATGGAGACCTAATCCAAATGGAAGGGAGTCCGCCCGAGACCCAGGAGAGCAAGAGGCCCT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CCAGCCTGGGCTGCTGCTAACTGGGGCCTGCGTGGAAGGCCTCCGCTCCCTGCACACACACGGACAGGAATTTC  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  CGTGACTGTGGTGTGGAGACTGGAGCCCAAGCTCTGCAGCGTGTCGCCCTCAAGCTGTAGGCCCATGTTCCAGT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CCCTCCACCCACCCACCGGGCTCAGCTCCAGGGCACAGTCACTTGTCCGTTGCAGGTTGGGCACTAGAAAAGGC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CCCCACTGGCTGCCTGGGAGCCCCACACCACCGGGCCAGTGCAGGCACTGTGGTGATCCCATAAAAGGCCAGTC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CATTTGCAGGGTCATCAGACAGTCACCTTTGGCCTCAAGAGGCCTCAGAACTGCAAACTCCTGCGTCGGTCTAT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  ACTACTCGGCCATGGCCCACATCAGCAGTCAACCCTGCACTCTTTCCCAGCGATCTTGGATGTGTCCCCAGGAT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CCGTCACAGTGTTCCAGGCAACCTGGACTTGTCAAAGTCAGCACCTGAAGGAGAGGCCACCTGCCATTCCCCCT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GGGAGTTTTCTGTTGTCAGCAGGACTTATGGTTCTGGGTCTCAGAGCTTCAGGCCTCACTGTCCTTCTGCCACG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GATGCTCAAGGTTCCTGGGCAGACCAGCACCTCTGGAGGACAATGGACAAAATGTCTCTTAGACCTGTTCTGGC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TGAAGGGCTATCTCTGGCACCTCTGAGATCCCTAGGTCCTGCCCTCCTGGTCCGTGGGCCAGGATGTGCAGAAC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AACCACTCAGGCCTTTCTGGCCCACCTGGACAGTGCATTTACCTGTGTGCTGCGGGAGGCAGACTGCACAGCTG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TCCTAGGGTAACTCACTCTGCAGCCCTTGAACATGGCACTGCCCTCCTCTGGCACTCATGCTGGGCCTGTGCCC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  ACTGCTGCCTCTCCATCCCTCTCTCATTGGCCTATACATCTCTTAGGACCTTTGTAATGGTGTCCATGCACCTT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TAGAGGACTTCAGAGGCCCTGCCAAGTCTAGCATGTTCCTGTCTCCAACACCGCCTCCTGCACATGCAGAGCAG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  ACAGAAATACCCCACACATTCCCCAGCCTCTCTGCCCAGTATGCTCATCCACAGGGTTTTCTCACTGCTATGAA  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CCAGCCCCACAGCCCCAGGCCCCTGTCACCTGGCTATGCCCACTCATCCCACCCGTCTCGTGCTGTTGCTTCCC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GTAGATGGCGAGCACCTTGCAGGCAGCCTTCTGATCAGTACTGCTCTCCTAGGGCCTGGCACACTGCAGCTGCC  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CTGTAAATGTTCAGCTCAGCGATTGCCAAATACCAGTTAGGGAAGAACACTGGCATCTTTTTCTATTCATTCCC  2442

Query    1  -------------------------------------------------------ATGGAGTCTCGCTC-TGTT  18
                                                                   |||||||.||.|.| ||||
Sbjct 2443  CCTTCAACATATTTTTTGTAGTTTTTTATATAAATGACTTTTTTTTTTTTTTGAGATGGAGTTTCACCCTTGTT  2516

Query   19  GCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTG  92
            |||||||||||||||||.||||.|.|||||||||||.||||||||||||||||||||||.||||||||||.|||
Sbjct 2517  GCCCAGGCTGGAGTGCAATGGCGTAATCTCGGCTCAGTGCAACCTCTGCCTCCCAGGTTGAAGCGATTCTCCTG  2590

Query   93  CCTCAGCCTCCAGAGTAGCTGGGACTATAGACATGCACCACCACGCCCGGCTAATTTTGTATTTTTGGTCGAGA  166
            |||||||||||..|||||||||||.||.||.||||||||||||.|||.||||||||||||||||||.||.||||
Sbjct 2591  CCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCTGGCTAATTTTGTATTTTTAGTAGAGA  2664

Query  167  CGGGGTTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCC--ACCACCTCGGCCTCCCA  238
            .|||||||..|||||||.|||||||||.|||.|.||||||||.||||.|||| ||  .|||||||||||||||.
Sbjct 2665  TGGGGTTTCTCCATGTTGGTCAGGCTGCTCTCGGACTCCTGATCTCAGGTGA-CCTGCCCACCTCGGCCTCCCG  2737

Query  239  AAGTGTTGAGA---------------------------------------------------------------  249
            |||||.||.||                                                               
Sbjct 2738  AAGTGCTGGGATTACAAGGGTGAGCCACCATGCCCGGCCATAAATGATTTTATTCATTTTTATGTTTTCTTTTG  2811

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2812  GGCGGCGGGATGGAGTCTCTGTCACCCAGGCTGGCGTGCAATGGCACGATCTTGGCTCACTGCAAGCTTCCCCT  2885

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2886  TCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACGTGTGACCATGCCGGGC  2959

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2960  TAATTTTTTATATTTTTAGTAGAGAGAGGTTTCACCGTGTTAGCCAGGATGGTCTCGATGATCTGACCTCGTGA  3033

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3034  TCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCCTGAGCCACCGCGTCCGGCCTCCATAAATGACTT  3107

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3108  TTAAAGGGGTTGTATGTTTAGTGTGAACAAAGACAGTACAAAGCATATAAAATACAAGGTGAAAGCCCCCCCCC  3181

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3182  CGCCACATTAGCTGCGCCCCTGAAGTGTCTCCAGCAGAAGAGATGGATGAATGGAAGGACACACAGATGGACAG  3255

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3256  AGAGCAGGAAAGACTGTTAGCTCTGCTAACAGTCAGGACTATTCCTTCTGGACTCTGTGCCTTTGCCTGCACAG  3329

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3330  CTAGTGTTGATGGCTTGTTTGTTGTTTTCACCAGAGTGAGCTCCTTCTGGACATACTGCCTGGCAGCCTGCCTT  3403

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3404  CCTAGGGAGCTGGCGCCAAGGCCTCTCCCTGATGGCACACAAGGAGCCTCCTTCCTGTAGCAGCGCCCAGTTTT  3477

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3478  CATGTGGATGGATTGTAGTTCATTTGACCCTCCCCATCCGCGGGCCATCCGGCTTGTGTCCAGCTTTTAGCTCT  3551

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3552  TGCCAATGGTGCTGCAGTGGCCATTCTTGTAGTTATAGCTTTGCGTACTCAGGAAGGCCCTTCTCCCGACTGCG  3625

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3626  GCCCCCAGCCTGGTCCACTAAATGCAGCCTGTGGTCGGGCAGACAGCATTGGGGTCCATTAGGAAGACCAGGTT  3699

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3700  TGCTGGGCATAAGCTTCACAGGACGGGAGAACCTGCCCATGGTGGACTGTCGTTCTCCACAGCTCCCTTCCCTT  3773

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3774  GCCCCTTCGGGCCTCCAGGATATGTTTGCGGGGGTGGGTGTGGTGTCCAGCTGTTACCAGCTTCTGAGCTAGAG  3847

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3848  CTGTACTGCCTCACGTACACCCCCACCTCTGTAAATGGTCCTTGATTAAATCGTCCTCATATTACCTCCTGCAA  3921

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3922  TGTGCCAGCTGATTCCCACACACCCTGACTGACATAGTTGTGGCCTCTCGAACTTTGATATTTGGCCTGGGAGG  3995

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3996  ACAGAAGAGTAAGGTCGCCACGGAAACGCAAGGGGCTCAGTTGTCCCCCCACCCCAAGTTGATGCAGCATCTTC  4069

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4070  TCGGTCAGAATTGCTTCAGGGTGGTTTGCGCACCCTCACTTTGATGATTTAATGAAGACATTTCCTTCTTTCCC  4143

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4144  AGCATCGGGCAGTAAGTTTCCTGGGCAGAGGCACTTTCTGTTGGTCTGGTCTTGTGGGCCCAGGCAAGCAGCCC  4217

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4218  CCTGCAGCCAAGGTGCGGCAATGACCACAGTGACCGCGTCCAAGTGCTGCCGAAACGCCTTTTTCCTCTTCCCT  4291

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4292  GTTTCCCTGGACCCTTTCCTGCTCTCTGTCCATCTGTGTGTCCTTCCGTTCACCTGTCTCTTCTGCTGGAGACA  4365

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4366  CGTACCTGAAGCAGGTCCTCTCCTGTCACTTCCTGGCTCCCCAGGGCTAGGTCCCAGGGTGCTCTCGCTCTGGC  4439

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4440  TTTCGAGGCTCCTCACCACCCAGCCCACCCCACCCCCACAGGCCCCTGTGCTCCAGTTTCATCCCTGGTCACAA  4513

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4514  TGCAGTCTGCAGATGCCAGACCCCTCTTCTGTGCCCAACGGCTGGGACACCCCTACTCCCAGAGAGGCCTCTGT  4587

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4588  GGACACCCCCACAGCTCTCGCAGCACTTGATACCTTGAGTGTGATTGGTCACATCTGGGCTTTCTCCCCCACCC  4661

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4662  ATCTGTGGAACCCCAAGAGCCAGGACAGTGACCTCATCACCTCTACTGTCTCCCCTAGCACCTCTGGGAGGAAG  4735

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4736  GGCCCACAGTAGGTGCTCAATAGATGTGTAAAGAAGGCAGGGAAGCAAGAAGGTTGCTCAAACAAGACCATGTT  4809

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4810  CCCAGCAGACAGATTGCACTCTGACCCAGATGCCACCACACGAAACTTACACCTGCCTGGGGAACAATCCTGTG  4883

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4884  CTTGGCTCTCCTTGGTGGCCAGGGACAGTTGTGCCTCATCCCTCACTTGCAAACCCCAGTCCTGTCTGACCCAG  4957

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4958  AGACCCTCACAGGGCATCAGCCAGTGAAGGCGGTTTGGGGCTGGAGGATATGTTCTGATCTTGGGAAGAGCTTG  5031

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5032  GTAGGAGCCAGCCACAGAAAGTTTCAGGGCAGAACTGAACAGGTCTCGGGAAGGACACTTCATGCCAGCTAGAG  5105

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 5106  AGGCTCTGGGCACAGGAAAGAATTGGACTTCGGGCAGAAAAATGTTTGTGCTATTTAGTACTATGTAACAAATC  5179

Query  250  -------------------------------------  249
                                                 
Sbjct 5180  ACTCCAAAACTTCATTGCTTAAAGCAACAAGCATGTA  5216

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