Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
XR_001755383.1
Aligned Length:
5053
Identities:
217
Gaps:
4805

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CCAGGAGTCTCTCTGCTGCCAGCCCCGCCCAGACTCCAGGCAGGTTCTCGTTGCTATGGTGATCGCCGGTGCAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCTGGATGCTTGGACGCGCCGCTGCCAGTCCAACGCAGACCCCGCCCACGACGTCGACGATTCGTGTAGCCCGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGGTCCCGCGTGGCTCTCGTTGCCATGGTGATCGCCGCCGCTGGCTCAGGCGGACCAGGCCGCGCGGAGCCCCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCTTTCACAGCCATCGCTGGACTGTGGAAGAATGAGGTCCTCCCTGACACCTTTGGGGCCCCCTGTGAGCCGCG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ACCGTGTCATCGCCAGCTTCCCTAAGTGGTACACGCCGGAAGCCTGTTTGCAGCTCAGGGAGCACTTCCACGGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CAGGTCAGCGCTGCCTGCCAACGCAGGAACACGGGGACTGTCGGGCTCAAACTCTCCAAGGTGGTGGTGGTTGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CGATCTCTACGTGGGGAAGACCAGCCTCATCCACAGGTTTTGCAAGAATGTTTTTGATCGAGACTACAAGGCCA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CCATTGGGGTGGACTTTGAAATTGAGCGCTTTGAGATTGCTGGGATTCCCTATAGCCTCCAGATCTGGGACACA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCTGGGCAGGAGAAGTTCAAGTGCATCGCATCTGCCTACTACCGGGGTGCCCAGGTGATCATCACGGCCTTTGA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CCTCACTGACGTGCAGACCCTGGAGCATACCAGGCAGTGGTTGGAGGATGCTCTGAGGGAGAACGAGGCAGGCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CCTGCTTCATCTTCCTCGTGGGAACCAAGAAGGACCTTCTGGCGAGAACGTGAAGGCATTCTTCAGCCGCGTAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  CCGCCCTGGCATTCGAGCAGTCGGTGCTGCAGGACCTGGAGAGGCAGAGCAGTGCCCGGCTCCAGGTCGGCAAT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GGAGACCTAATCCAAATGGAAGGGAGTCCGCCCGAGACCCAGGAGAGCAAGAGGCCCTCCAGCCTGGGCTGCTG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CTAACTGGGGCCTGCGTGGAAGGCCTCCGCTCCCTGCACACACACGGACAGGAATTTCCGTGACTGTGGTGTGG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AGACTGGAGCCCAAGCTCTGCAGCGTGTCGCCCTCAAGCTGTAGGCCCATGTTCCAGTCCCTCCACCCACCCAC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  CGGGCTCAGCTCCAGGGCACAGTCACTTGTCCGTTGCAGGTTGGGCACTAGAAAAGGCCCCCACTGGCTGCCTG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GGAGCCCCACACCACCGGGCCAGTGCAGGCACTGTGGTGATCCCATAAAAGGCCAGTCCATTTGCAGGGTCATC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AGACAGTCACCTTTGGCCTCAAGAGGCCTCAGAACTGCAAACTCCTGCGTCGGTCTATACTACTCGGCCATGGC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CCACATCAGCAGTCAACCCTGCACTCTTTCCCAGCGATCTTGGATGTGTCCCCAGGATCCGTCACAGTGTTCCA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GGCAACCTGGACTTGTCAAAGTCAGCACCTGAAGGAGAGGCCACCTGCCATTCCCCCTGGGAGTTTTCTGTTGT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CAGCAGGACTTATGGTTCTGGGTCTCAGAGCTTCAGGCCTCACTGTCCTTCTGCCACGGATGCTCAAGGTTCCT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GGGCAGACCAGCACCTCTGGAGGACAATGGACAAAATGTCTCTTAGACCTGTTCTGGCTGAAGGGCTATCTCTG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GCACCTCTGAGATCCCTAGGTCCTGCCCTCCTGGTCCGTGGGCCAGGATGTGCAGAACAACCACTCAGGCCTTT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CTGGCCCACCTGGACAGTGCATTTACCTGTGTGCTGCGGGAGGCAGACTGCACAGCTGTCCTAGGGTAACTCAC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TCTGCAGCCCTTGAACATGGCACTGCCCTCCTCTGGCACTCATGCTGGGCCTGTGCCCACTGCTGCCTCTCCAT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CCCTCTCTCATTGGCCTATACATCTCTTAGGACCTTTGTAATGGTGTCCATGCACCTTTAGAGGACTTCAGAGG  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CCCTGCCAAGTCTAGCATGTTCCTGTCTCCAACACCGCCTCCTGCACATGCAGAGCAGACAGAAATACCCCACA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CATTCCCCAGCCTCTCTGCCCAGTATGCTCATCCACAGGGTTTTCTCACTGCTATGAACCAGCCCCACAGCCCC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  AGGCCCCTGTCACCTGGCTATGCCCACTCATCCCACCCGTCTCGTGCTGTTGCTTCCCGTAGATGGCGAGCACC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TTGCAGGCAGCCTTCTGATCAGTACTGCTCTCCTAGGGCCTGGCACACTGCAGCTGCCCTGTAAATGTTCAGCT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CAGCGATTGCCAAATACCAGTTAGGGAAGAACACTGGCATCTTTTTCTATTCATTCCCCCTTCAACATATTTTT  2294

Query    1  ---------------------------------------ATGGAGTCTCGCTC-TGTTGCCCAGGCTGGAGTGC  34
                                                   |||||||.||.|.| ||||||||||||||||||||
Sbjct 2295  TGTAGTTTTTTATATAAATGACTTTTTTTTTTTTTTGAGATGGAGTTTCACCCTTGTTGCCCAGGCTGGAGTGC  2368

Query   35  AGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGT  108
            |.||||.|.|||||||||||.||||||||||||||||||||||.||||||||||.||||||||||||||..|||
Sbjct 2369  AATGGCGTAATCTCGGCTCAGTGCAACCTCTGCCTCCCAGGTTGAAGCGATTCTCCTGCCTCAGCCTCCCAAGT  2442

Query  109  AGCTGGGACTATAGACATGCACCACCACGCCCGGCTAATTTTGTATTTTTGGTCGAGACGGGGTTTTGCCATGT  182
            ||||||||.||.||.||||||||||||.|||.||||||||||||||||||.||.||||.|||||||..||||||
Sbjct 2443  AGCTGGGATTACAGGCATGCACCACCATGCCTGGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCTCCATGT  2516

Query  183  TAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCC--ACCACCTCGGCCTCCCAAAGTGTTGAGA-----  249
            |.|||||||||.|||.|.||||||||.||||.|||| ||  .|||||||||||||||.|||||.||.||     
Sbjct 2517  TGGTCAGGCTGCTCTCGGACTCCTGATCTCAGGTGA-CCTGCCCACCTCGGCCTCCCGAAGTGCTGGGATTACA  2589

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2590  AGGGTGAGCCACCATGCCCGGCCATAAATGATTTTATTCATTTTTATGTTTTCTTTTGGGCGGCGGGATGGAGT  2663

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2664  CTCTGTCACCCAGGCTGGCGTGCAATGGCACGATCTTGGCTCACTGCAAGCTTCCCCTTCCGGGTTCATGCCAT  2737

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2738  TCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACGTGTGACCATGCCGGGCTAATTTTTTATATTTT  2811

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2812  TAGTAGAGAGAGGTTTCACCGTGTTAGCCAGGATGGTCTCGATGATCTGACCTCGTGATCTGCCCGCCTCGGCC  2885

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2886  TCCCAAAGTGCTGGGATTACAGGCCTGAGCCACCGCGTCCGGCCTCCATAAATGACTTTTAAAGGGGTTGTATG  2959

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 2960  TTTAGTGTGAACAAAGACAGTACAAAGCATATAAAATACAAGGTGAAAGCCCCCCCCCCGCCACATTAGCTGCG  3033

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3034  CCCCTGAAGTGTCTCCAGCAGAAGAGATGGATGAATGGAAGGACACACAGATGGACAGAGAGCAGGAAAGACTG  3107

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3108  TTAGCTCTGCTAACAGTCAGGACTATTCCTTCTGGACTCTGTGCCTTTGCCTGCACAGCTAGTGTTGATGGCTT  3181

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3182  GTTTGTTGTTTTCACCAGAGTGAGCTCCTTCTGGACATACTGCCTGGCAGCCTGCCTTCCTAGGGAGCTGGCGC  3255

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3256  CAAGGCCTCTCCCTGATGGCACACAAGGAGCCTCCTTCCTGTAGCAGCGCCCAGTTTTCATGTGGATGGATTGT  3329

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3330  AGTTCATTTGACCCTCCCCATCCGCGGGCCATCCGGCTTGTGTCCAGCTTTTAGCTCTTGCCAATGGTGCTGCA  3403

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3404  GTGGCCATTCTTGTAGTTATAGCTTTGCGTACTCAGGAAGGCCCTTCTCCCGACTGCGGCCCCCAGCCTGGTCC  3477

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3478  ACTAAATGCAGCCTGTGGTCGGGCAGACAGCATTGGGGTCCATTAGGAAGACCAGGTTTGCTGGGCATAAGCTT  3551

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3552  CACAGGACGGGAGAACCTGCCCATGGTGGACTGTCGTTCTCCACAGCTCCCTTCCCTTGCCCCTTCGGGCCTCC  3625

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3626  AGGATATGTTTGCGGGGGTGGGTGTGGTGTCCAGCTGTTACCAGCTTCTGAGCTAGAGCTGTACTGCCTCACGT  3699

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3700  ACACCCCCACCTCTGTAAATGGTCCTTGATTAAATCGTCCTCATATTACCTCCTGCAATGTGCCAGCTGATTCC  3773

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3774  CACACACCCTGACTGACATAGTTGTGGCCTCTCGAACTTTGATATTTGGCCTGGGAGGACAGAAGAGTAAGGTC  3847

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3848  GCCACGGAAACGCAAGGGGCTCAGTTGTCCCCCCACCCCAAGTTGATGCAGCATCTTCTCGGTCAGAATTGCTT  3921

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3922  CAGGGTGGTTTGCGCACCCTCACTTTGATGATTTAATGAAGACATTTCCTTCTTTCCCAGCATCGGGCAGTAAG  3995

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3996  TTTCCTGGGCAGAGGCACTTTCTGTTGGTCTGGTCTTGTGGGCCCAGGCAAGCAGCCCCCTGCAGCCAAGGTGC  4069

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4070  GGCAATGACCACAGTGACCGCGTCCAAGTGCTGCCGAAACGCCTTTTTCCTCTTCCCTGTTTCCCTGGACCCTT  4143

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4144  TCCTGCTCTCTGTCCATCTGTGTGTCCTTCCGTTCACCTGTCTCTTCTGCTGGAGACACGTACCTGAAGCAGGT  4217

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4218  CCTCTCCTGTCACTTCCTGGCTCCCCAGGGCTAGGTCCCAGGGTGCTCTCGCTCTGGCTTTCGAGGCTCCTCAC  4291

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4292  CACCCAGCCCACCCCACCCCCACAGGCCCCTGTGCTCCAGTTTCATCCCTGGTCACAATGCAGTCTGCAGATGC  4365

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4366  CAGACCCCTCTTCTGTGCCCAACGGCTGGGACACCCCTACTCCCAGAGAGGCCTCTGTGGACACCCCCACAGCT  4439

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4440  CTCGCAGCACTTGATACCTTGAGTGTGATTGGTCACATCTGGGCTTTCTCCCCCACCCATCTGTGGAACCCCAA  4513

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4514  GAGCCAGGACAGTGACCTCATCACCTCTACTGTCTCCCCTAGCACCTCTGGGAGGAAGGGCCCACAGTAGGTGC  4587

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4588  TCAATAGATGTGTAAAGAAGGCAGGGAAGCAAGAAGGTTGCTCAAACAAGACCATGTTCCCAGCAGACAGATTG  4661

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4662  CACTCTGACCCAGATGCCACCACACGAAACTTACACCTGCCTGGGGAACAATCCTGTGCTTGGCTCTCCTTGGT  4735

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4736  GGCCAGGGACAGTTGTGCCTCATCCCTCACTTGCAAACCCCAGTCCTGTCTGACCCAGAGACCCTCACAGGGCA  4809

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4810  TCAGCCAGTGAAGGCGGTTTGGGGCTGGAGGATATGTTCTGATCTTGGGAAGAGCTTGGTAGGAGCCAGCCACA  4883

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4884  GAAAGTTTCAGGGCAGAACTGAACAGGTCTCGGGAAGGACACTTCATGCCAGCTAGAGAGGCTCTGGGCACAGG  4957

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4958  AAAGAATTGGACTTCGGGCAGAAAAATGTTTGTGCTATTTAGTACTATGTAACAAATCACTCCAAAACTTCATT  5031

Query  250  ---------------------  249
                                 
Sbjct 5032  GCTTAAAGCAACAAGCATGTA  5052

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