Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
XR_930661.2
Aligned Length:
1867
Identities:
217
Gaps:
1624

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTCGGCCTCCCTAAGTTTTCGGATCACAGGCGTGAGCCACCACGCCCAGCCGGATTGCAATTTTAAATAGCATA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATCAGAGAGGCTTAATGGAAGAGGTAATATTTGAGGAAAGACCTGAAGAAGGTAAGGGAGTAGGCACTGAAGAT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  ATTGGGGGAACAGTGCTCCCCGAGACATCTGGGCAGCCAGGCACAGGGACCACAAGCAGAAAAGGGTCCTGTGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGGTTTCGTGTTTTCTTTACAATTTGTCAATGTGAACACCATGCTCACACCAAAGAACAGCAAGTTTCCTACCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GGCTTCTCTGCCTTCCTCCTTCCTTCCCTCCCTTCCTCCCTCCTTCCTTCCTTTCTTCCTTTCTTCCTTCCGTT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTCCCTTTCTTCCCAATATGCCCCACTTCAATGGATGAGTTTTCCAGCTCCCTCGGCTGCTTTCTGCATTGCAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ATGACAAGTATCCACTAAATATTCATTCATTAGAAACAGCCAGACGATGCTGAGCCTCTGTAGCTCTCTAGCAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CTACCATAGCACAGATCTCAGGAAGACCCACAAGATACATTTGTCAACAAGTCGATGGCCTCCTATGTGGCCCT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GTGCTGTGTGCTGAGGCTACAGGAAGGAACAAAGCCTCCTATCTGGGGGCCCACTTCTGCAGTTAAGTTCATCT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GGTGTCCTTTGTAATACTGCAAAGAGAACTTCTTACGCTGTAGCTGAATGAGAGAAATATCCCATTCCAAACCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTGATGGAAACTGGCCAAGTCAGCGTGTGAGAGGAAGAAGGAAGAAAAAGTTTGCCTACCCTTGCACCGGAAGC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGGAGGGAAAGAGATGGGCTTGTTGGAAACCAGGAAAGGAGAAATTGACAGAGCTGCAGGGAGCAATCCCTTTC  888

Query    1  -----------------------ATGGAGTC--------TCGCTCTGTTGCCCA------------GGC-----  26
                                   ||   |||        .|.||.|||||..||            |||     
Sbjct  889  CACCTTCACCCAGGACTGAGATCAT---GTCATACAAAAGCCCTGTGTTGTTCAGAGGACCAGAGGGGCTGGAG  959

Query   27  TGGAGTGCAGTGGCCTGATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCC  100
            |||||||.|||||..|||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct  960  TGGAGTGAAGTGGTGTGATCTCGGCTTACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCC  1033

Query  101  TCCAGAGTAGCTGGGACTATAGACATGC--ACCACCACGCCCGGCTAA-TTTTGTATTTTTGGTCGAGACGGGG  171
            |||.||||||||||||..|.||||  ||  .|||.||.|||.|||||| ||||||||||||.||.||||.||||
Sbjct 1034  TCCTGAGTAGCTGGGATCACAGAC--GCCTGCCATCATGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGG  1105

Query  172  TTTTGCCATGTTAGTCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACC-ACCTCGGCCTCCCAAAGTGT  244
            |||.||||||||.|||||||||||||.|||||||||||||||||||||||||| .||||||||||||||||||.
Sbjct 1106  TTTCGCCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCACCTGCCTCGGCCTCCCAAAGTGC  1179

Query  245  TGAGA---------------------------------------------------------------------  249
            || ||                                                                     
Sbjct 1180  TG-GAATTACAGGCATGAACCACTGCACCTGGCCTCTATTACCTTTAAAAGTGCTCCTTGAAGAGAAAATCCAC  1252

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1253  TCTGCCGTTTCAAGCTTGACTTCCCTCCCCAGTCTTAGAGACTGATCACTGGGGCAGAGTGACATTTTCCCACA  1326

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1327  ATGCTGGCTCATTATTTTCCTCCTGGAATTGCAAATCCAAGGGACAAGTGGTACAGCCTGCACCCATCCAGAAG  1400

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1401  GGGAGGGAATCCCACCAGAGGTGCCCTGAAACAAAGAAAACAAGTAACTTCAAAACCACATCCTAAAATCTGGA  1474

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1475  CCTGTGACAGGACAGATGGAACTCTGGATTGTTTGATTCTATCAGCAGAACAGAGGAAGGAAATGTTTTAAAAC  1548

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1549  GAGATTATGTTATTTTCCCCAGTTATTATGAAGCCTTCCTGAAATGAACTTTAAATATCGGCCACCACTTTCAT  1622

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1623  GAGGCTGAATGGGATTCAGCAATTAGGAGCGTTGCAGGGAAGTGTGGCAGGGCAGAGGTGGGACAAATTGCAGA  1696

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1697  TCCCTGTGGGGTCCCTTGGTTAGGTGACAATTAGTCTATAAAACACAGCTGTGTGTGTTAGGGAGGGAGTGGTG  1770

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 1771  TCTTTAAAAAGCTCTGTGCCCAATAGGAACATTAATTAAAGGGTCTTTTTTCAAAGGACATTAATAATAATGAA  1844

Query  250  -----------------  249
                             
Sbjct 1845  TAAAAAGCCTTCTGCGA  1861

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.