Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10792
Subject:
XR_935292.2
Aligned Length:
5004
Identities:
217
Gaps:
4757

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATAGGTGTTGGTGCAGAACGGTTAAGAAGGCTCCTTCTGTACCAGAAGTGAGGCCCAAGTAGGAGCTTATTCTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGTCAGTGGAAATCGTGCAGACCTTCCAGAAGGGAATGATGTAATTGGAAAGCATTTTTGGATACTGCACGGCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GTCGTTTGAAGAAAAAACTGGAGAGATGGGGGATGGAAGCCTGGGAGTCACATTTTTTCAAGCAAGACATCACA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAGGGTGAGGCCCAGTGACAGAGATGACAGATATTCAAAGATGGAATGAAAGAGGTTTGGTGACTGGATATAAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CAACGAAACAGGAAGAATTGAATTTGGGTCTGATATTTCCTGGATGCAAGATCAGGAGGATGTTGGCACCATGG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTTAGTGGGGAAACTGGGGACCGATTCTGGAGGTATACCAGCATGGTGAGTTTGGTTTTAGATGGGTTGTGTTT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GACATAGGGCTAGCAATTCTAAGTGAAGATGTCTAAAGAAAGATAGAAGTGACTCAGCTCTGAAGTTCTGAAAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GATCAGCCATCAGCGTGGCATGAGGAAGACCTAGGAACAGACAGACTGGGGAGAAGACACAGAGCCAAGCAGGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCTGGCCTGCAGCCCAAACCCTGTGGAATCCCTACATTCAAGGACCAGGTTGAAGTGAAGCCATTGACAGGAAC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGAGATGCAGTAGTGTTCTGGAAGTCAAGTGAGGAGGAGGATTGAAGAAGAGGTTGGTCAAAATTCTGGGGGTT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GCCCAGTGGAAACACCAGACTGCAAAGCTTTGAGAAGTCTGTATGAGATGAACAACTGGAAAAGGTTCTTCGTG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AAGAATTTGTGTGGTGAAGAGCTGGAATAGCGGCTTGAGGGAGAGAAGCCAGATGGAGTCTCACTCTGTCGCCC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AGGCTGGAGTACAGTGGTGTGATCCGGGCTGACTGCAAGCTCTGCCTCCCGAGTTCACACCATTCTCCTGCCTC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGTCTCCCGAATAGCTGGGACTACAGGCTCCCACCACCACACCCGGCTAATTTTTTGTACGTTTTTTTTTTTTT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AGTAGAGACAGAGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACATTGTGATCCACCCGCCTTGGTC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TCACAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCCATGTTGATTTGTTTTAATGGTAGTTGCAAT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  ACTTGTGAGAGTGACATCCACCTGGATGCTGACTTGAATGGAATTTCATAACTGTTGGGTACTGACCATGAGTT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GGTGTGGGGACATACAAAGTTGAACAAGACATAGGCTTGCCTCATAGTGTCTACAGCCTGGAAGAGGGAAGAAA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GTGACAACACAAATAGTTCTGCATCTTATGAATTCATGGGAAGAGGAGAGGTGTCATAAGACAGGTATGCAGTG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CTGCAGAGGTTTGGAGAGGTTGGATCAGGTTGGGGTGTGGAGGGCGGGGAGGGAAGGAGTTCAGAGAACCTTTC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CTGAAGAAGGTAGCATCTGAGCGGACATCAAAGGTGAGCAGAAGCTGCGTAAGCTGAGAGAGGGTGGAAAAGAG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GGCGTTTCCAGTGGAGGGACTTAGCACAAGCAAAGACAACAAACCCTTGGGCCTGTAAAGGAAACAATAAATTA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATTTGTCTAGAATGTGACAGTAGTGGAATATGAGATTCAACGACTGTCCTAGCTCTTTTTGAAAATTTTGCTTT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  CTACATAGTTACTTAATAGCTCCAATCTGGAAACAACCCAAATGTTCATTAACAGAAGACTGGATAAACAAATT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GTGGCATATCCAGACAATAGAATGCTACTGAACAATTAACAAAACTGTAGACACAACATCAACAAACCTAAAAA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TAATTATGTGTCATGAATGAAACCAGAAAAAAGAATAAATACTTCATGATCTCATTTATAAGAAAATTCTAGAT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  AAGGCACAAACTAAGCTACAGTTAATATGTAGTTTCCAGGGGATTCGTTATCAGTAGTGCAGAGAGAAGAGGAT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TATAACAGACATGAGGTAATGTGTTGGGTGATAGATATGTTCATTATCATAGCTATAGAGATGGTTTGAAATAT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ATGTACATGAAAAATGTATCAAACTGTATACTTGCAACATGAGTTTTATTGCATGTCAATTATACTGCAATAAG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GCGTTTAAAAAAGGGTTCTACATAAAAATACAAATCCACTTATTTTAGAAAACCAGAAGTTTTGGCAACCGTAT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GCTGATTCTGCCATCTCCAGCCTGATTCCTTGGGAGAGGTTAACCTTCCACAGTGGTGGCAAAAGTCAGCAGGC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  AATGAAGGCTATTTCCACCTGAGTCACCAGAAAGAATGGCTAGGTCATAAGCCACATGGCTGGACTCTATCTAC  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CTCCCTGTAATCTCCACTCTTTCACCTGTGCCAGCAATGGTTTAGAGATGAACAGACCATAAAGACTATGGAAA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TCCAATAATCTTTAATGCATTTGCTCTGTCAGTGACATTTGCCATAGGAGAGAGAGAGATTTGGAATTTATAAT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  TTGTACACCCTGATTCTGCACAGCCTTAGTCTCTGACAATGTGTGAATGCATATTTGGAAGGGACACATTCTCC  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  CAGTTTACTGCAATATCCTCGCTCCCTATTAATTACACCCAGTGATTAAGCCCACAATGCCTTTTAAATTTTCC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  CAGCAAGCCTTGTACAACAATCCAAATCAGGCCAAAAGTAGGAGGAGAGCTATTTTCTTCCTGCCTGCTTTCCC  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  TCTGAGCATACAAATTTGGAGGCCCCATAACAACTGCTCCCCTCTTCATGCTGGCAGAGCCTAATTATTTCTCA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ACTTATCCCTAAACAAAGAATAGATCACCAAAATACTTCAGATGAAACGTAGAGCAGACAGGTCCTGGGCTGGG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  AATCCAGGAGACTGATGCAACAAATGCAACAAAGAGCATTAAGAGACTAGCAATGTCCATGAAGAAGGGAACCT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  AATAAGTAAGCTGCCACAGCTCAAGTCCTCCTGGCCAAAGCCAGGTCATGTCCCTCTATAACCAGCCAGTGAGA  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  AGGGAATGAGGTCCCTAAACGGGTTCGGGGGATTCATGATTCTCTCTGGGGACTGGAGAGAGAGCCTGGAGGTC  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  TCACTTTCTTGAGCACATCGGGGTGACTGATGGACCCTGCCGGGTGGTCAAGGTGAGATGGCTTCTGGCACAGG  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  TATTGGATGTGACATAATCCTTGCGAAGGGCCTAGACAGTTAAGGAAGTGCACCCTACCTCCTGAAAGCTCCCT  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  CCATACCTGGCACTAAAAGGTATTATCACCAGTTCAGATATTTTGATATATATGGTTCGCTTCTGTCTGATGAC  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  TCCCTGCAAAAAGGCTACCCTCCAAGCTACCCTCTAGGGTGAGTCATTAGACAGAACAAGGATATAACACATCC  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  CCTGCTCTCCTAAGGAAATTCTCTCAGTGTGAATTTTCTTGTGCTGAATGAACAAAGATTTTTTTTTGTTTGTT  3478

Query    1  --------ATGG-------------AGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTC  53
                    .|||             ||||||..|||||..|||||||||||||||||||||..|||||.||||.
Sbjct 3479  TGTTTTTTTTGGTTTGTTTTTAGACAGTCTCAGTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTT  3552

Query   54  ACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAG--ACA  125
            |||||||||||||||||...||||||||.|||||||.|||||||||||||.||||||||||||.||.||  ||.
Sbjct 3553  ACTGCAACCTCTGCCTCTGGGGTTCAAGTGATTCTTGTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACC  3626

Query  126  TGCACCACCACGCCCGGCTAA---------TTTTGTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGG  190
            ||  |||||||||||.|||||         ||||||||||||.||.||||.||||||||||||||||.||||||
Sbjct 3627  TG--CCACCACGCCCAGCTAATTTTTTTTTTTTTGTATTTTTTGTAGAGATGGGGTTTTGCCATGTTGGTCAGG  3698

Query  191  CTGGTCTTGAACTCCTGACCTCAAGTGATCC-ACCACCTCGGCCTCCCAAAGTGTTGAGA--------------  249
            ||||||||||||.|||||||||||||||||| .||.|||.|||||||||.||||.||.||              
Sbjct 3699  CTGGTCTTGAACCCCTGACCTCAAGTGATCCTCCCGCCTTGGCCTCCCAGAGTGCTGGGATTACAGACATGAGC  3772

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3773  CACTGCGCCTGGCCTCAATGAGTAAATGTTTTGCTAAAAAATTTCCCACACTGCCTCAGCATAAAGCCTTACTT  3846

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3847  CAGTGTCAACTTTTGGTGCTGAACAAGGCACTCCTTGGCTGAAACCTTCCCACATTCTATGCATTCATAAGGCT  3920

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3921  TTTGCAGGGTGAACTTTCTGGTGCTGAGCAAGGTTAGAGGGACAGCCAAAGGCTCTCTCACATTGTCCCCACTC  3994

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 3995  ATAAAACCTTTCTGTGTTGTGAACTTTCTGGTGCCCTGCAAGGTGGACATTTCTGCTGTAGGATTTCCCACACC  4068

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4069  TGCTGTACACATAAGGGCTTGCTCCAGAGTGAAGTCTCTGGTGGTGAACAAGGCTGGAGCTCTGGCTAAAGGAT  4142

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4143  TTCCCACATTCTTTGCACTCATAAGGACTTTCTCCAATATGGGTTCTTTGATGTTGACCAAGTCCATATTTGGA  4216

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4217  GCTCAAAGATTTCTTACGCAATGTAAATTAGTATAACCACTATGGAGAACAGTTTGGAGGTTCCTCAAAAAACT  4290

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4291  AAAAATAGAGCTACCATATGACCCATCAATCTGACTTCTAGTTATATACCCCAAAGAAAAGAAATCAGTACATT  4364

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4365  GAAGAGATATCTGCCCTCCCATCTTTGTTGCAGCACTATTCACAATAGCCAAGATTTGGAAGTAACCCAAATGT  4438

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4439  CCATCAACAGACAAATGGATAAAGAAAATGTGGTGCATATACACAATGGAGTAGTATTCAGCCATAAAAAAGAA  4512

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4513  TGAGATCTTGTCATCTGCAACAACATGGATGGAACTGGAGGTCCTTAAGGTTAAGCAAAATAATCCAGGCACAG  4586

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4587  AAAGAAAACATTGCATGTTCTCATCTATTTGTGAGAACTAAAAATTAAAACAATTGAACTCATGGAGATAGAGA  4660

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4661  GTAGAAGGATGGTTACCAGAGGCTGGGAAGGGTAGTGAGGGCGAGTGAGGGGGAAGTGGGGTGTTTAATGTGTC  4734

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4735  CAAAAAATGGTCAGAAACAATGAATAAAGTCTAATATATGACAGCAAAAGAGTGTGACTATAGTCAATAATAAT  4808

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4809  CGAATGGTACATTTAAAAATAACTAAAAGTGTATATTTGGATTGTTTGTAACATAAAGGATAAATGCTTGAGGT  4882

Query  250  --------------------------------------------------------------------------  249
                                                                                      
Sbjct 4883  GATGGATACCCCATTTACCCTGATGTGATTGTTACACATTGTATGCCTGTATCAAAGTATCCATATACCCCATG  4956

Query  250  ----------------------------------------------  249
                                                          
Sbjct 4957  AATAAATGTATATACCTACTATGCACCTACAAAAATTAAAATAATA  5002

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