Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10792
- Subject:
- XR_935292.2
- Aligned Length:
- 5004
- Identities:
- 217
- Gaps:
- 4757
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATAGGTGTTGGTGCAGAACGGTTAAGAAGGCTCCTTCTGTACCAGAAGTGAGGCCCAAGTAGGAGCTTATTCTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGTCAGTGGAAATCGTGCAGACCTTCCAGAAGGGAATGATGTAATTGGAAAGCATTTTTGGATACTGCACGGCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTCGTTTGAAGAAAAAACTGGAGAGATGGGGGATGGAAGCCTGGGAGTCACATTTTTTCAAGCAAGACATCACA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGGGTGAGGCCCAGTGACAGAGATGACAGATATTCAAAGATGGAATGAAAGAGGTTTGGTGACTGGATATAAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAACGAAACAGGAAGAATTGAATTTGGGTCTGATATTTCCTGGATGCAAGATCAGGAGGATGTTGGCACCATGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTTAGTGGGGAAACTGGGGACCGATTCTGGAGGTATACCAGCATGGTGAGTTTGGTTTTAGATGGGTTGTGTTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GACATAGGGCTAGCAATTCTAAGTGAAGATGTCTAAAGAAAGATAGAAGTGACTCAGCTCTGAAGTTCTGAAAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GATCAGCCATCAGCGTGGCATGAGGAAGACCTAGGAACAGACAGACTGGGGAGAAGACACAGAGCCAAGCAGGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCTGGCCTGCAGCCCAAACCCTGTGGAATCCCTACATTCAAGGACCAGGTTGAAGTGAAGCCATTGACAGGAAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGAGATGCAGTAGTGTTCTGGAAGTCAAGTGAGGAGGAGGATTGAAGAAGAGGTTGGTCAAAATTCTGGGGGTT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCCCAGTGGAAACACCAGACTGCAAAGCTTTGAGAAGTCTGTATGAGATGAACAACTGGAAAAGGTTCTTCGTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAGAATTTGTGTGGTGAAGAGCTGGAATAGCGGCTTGAGGGAGAGAAGCCAGATGGAGTCTCACTCTGTCGCCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGGCTGGAGTACAGTGGTGTGATCCGGGCTGACTGCAAGCTCTGCCTCCCGAGTTCACACCATTCTCCTGCCTC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGTCTCCCGAATAGCTGGGACTACAGGCTCCCACCACCACACCCGGCTAATTTTTTGTACGTTTTTTTTTTTTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGTAGAGACAGAGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACATTGTGATCCACCCGCCTTGGTC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TCACAAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCCATGTTGATTTGTTTTAATGGTAGTTGCAAT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACTTGTGAGAGTGACATCCACCTGGATGCTGACTTGAATGGAATTTCATAACTGTTGGGTACTGACCATGAGTT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GGTGTGGGGACATACAAAGTTGAACAAGACATAGGCTTGCCTCATAGTGTCTACAGCCTGGAAGAGGGAAGAAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GTGACAACACAAATAGTTCTGCATCTTATGAATTCATGGGAAGAGGAGAGGTGTCATAAGACAGGTATGCAGTG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CTGCAGAGGTTTGGAGAGGTTGGATCAGGTTGGGGTGTGGAGGGCGGGGAGGGAAGGAGTTCAGAGAACCTTTC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CTGAAGAAGGTAGCATCTGAGCGGACATCAAAGGTGAGCAGAAGCTGCGTAAGCTGAGAGAGGGTGGAAAAGAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GGCGTTTCCAGTGGAGGGACTTAGCACAAGCAAAGACAACAAACCCTTGGGCCTGTAAAGGAAACAATAAATTA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATTTGTCTAGAATGTGACAGTAGTGGAATATGAGATTCAACGACTGTCCTAGCTCTTTTTGAAAATTTTGCTTT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CTACATAGTTACTTAATAGCTCCAATCTGGAAACAACCCAAATGTTCATTAACAGAAGACTGGATAAACAAATT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GTGGCATATCCAGACAATAGAATGCTACTGAACAATTAACAAAACTGTAGACACAACATCAACAAACCTAAAAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TAATTATGTGTCATGAATGAAACCAGAAAAAAGAATAAATACTTCATGATCTCATTTATAAGAAAATTCTAGAT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AAGGCACAAACTAAGCTACAGTTAATATGTAGTTTCCAGGGGATTCGTTATCAGTAGTGCAGAGAGAAGAGGAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TATAACAGACATGAGGTAATGTGTTGGGTGATAGATATGTTCATTATCATAGCTATAGAGATGGTTTGAAATAT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ATGTACATGAAAAATGTATCAAACTGTATACTTGCAACATGAGTTTTATTGCATGTCAATTATACTGCAATAAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GCGTTTAAAAAAGGGTTCTACATAAAAATACAAATCCACTTATTTTAGAAAACCAGAAGTTTTGGCAACCGTAT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GCTGATTCTGCCATCTCCAGCCTGATTCCTTGGGAGAGGTTAACCTTCCACAGTGGTGGCAAAAGTCAGCAGGC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AATGAAGGCTATTTCCACCTGAGTCACCAGAAAGAATGGCTAGGTCATAAGCCACATGGCTGGACTCTATCTAC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTCCCTGTAATCTCCACTCTTTCACCTGTGCCAGCAATGGTTTAGAGATGAACAGACCATAAAGACTATGGAAA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TCCAATAATCTTTAATGCATTTGCTCTGTCAGTGACATTTGCCATAGGAGAGAGAGAGATTTGGAATTTATAAT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTGTACACCCTGATTCTGCACAGCCTTAGTCTCTGACAATGTGTGAATGCATATTTGGAAGGGACACATTCTCC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CAGTTTACTGCAATATCCTCGCTCCCTATTAATTACACCCAGTGATTAAGCCCACAATGCCTTTTAAATTTTCC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CAGCAAGCCTTGTACAACAATCCAAATCAGGCCAAAAGTAGGAGGAGAGCTATTTTCTTCCTGCCTGCTTTCCC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TCTGAGCATACAAATTTGGAGGCCCCATAACAACTGCTCCCCTCTTCATGCTGGCAGAGCCTAATTATTTCTCA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ACTTATCCCTAAACAAAGAATAGATCACCAAAATACTTCAGATGAAACGTAGAGCAGACAGGTCCTGGGCTGGG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AATCCAGGAGACTGATGCAACAAATGCAACAAAGAGCATTAAGAGACTAGCAATGTCCATGAAGAAGGGAACCT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AATAAGTAAGCTGCCACAGCTCAAGTCCTCCTGGCCAAAGCCAGGTCATGTCCCTCTATAACCAGCCAGTGAGA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 AGGGAATGAGGTCCCTAAACGGGTTCGGGGGATTCATGATTCTCTCTGGGGACTGGAGAGAGAGCCTGGAGGTC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TCACTTTCTTGAGCACATCGGGGTGACTGATGGACCCTGCCGGGTGGTCAAGGTGAGATGGCTTCTGGCACAGG 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TATTGGATGTGACATAATCCTTGCGAAGGGCCTAGACAGTTAAGGAAGTGCACCCTACCTCCTGAAAGCTCCCT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CCATACCTGGCACTAAAAGGTATTATCACCAGTTCAGATATTTTGATATATATGGTTCGCTTCTGTCTGATGAC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TCCCTGCAAAAAGGCTACCCTCCAAGCTACCCTCTAGGGTGAGTCATTAGACAGAACAAGGATATAACACATCC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CCTGCTCTCCTAAGGAAATTCTCTCAGTGTGAATTTTCTTGTGCTGAATGAACAAAGATTTTTTTTTGTTTGTT 3478
Query 1 --------ATGG-------------AGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCGGCTC 53
.||| ||||||..|||||..|||||||||||||||||||||..|||||.||||.
Sbjct 3479 TGTTTTTTTTGGTTTGTTTTTAGACAGTCTCAGTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTT 3552
Query 54 ACTGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCAGAGTAGCTGGGACTATAG--ACA 125
|||||||||||||||||...||||||||.|||||||.|||||||||||||.||||||||||||.||.|| ||.
Sbjct 3553 ACTGCAACCTCTGCCTCTGGGGTTCAAGTGATTCTTGTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACC 3626
Query 126 TGCACCACCACGCCCGGCTAA---------TTTTGTATTTTTGGTCGAGACGGGGTTTTGCCATGTTAGTCAGG 190
|| |||||||||||.||||| ||||||||||||.||.||||.||||||||||||||||.||||||
Sbjct 3627 TG--CCACCACGCCCAGCTAATTTTTTTTTTTTTGTATTTTTTGTAGAGATGGGGTTTTGCCATGTTGGTCAGG 3698
Query 191 CTGGTCTTGAACTCCTGACCTCAAGTGATCC-ACCACCTCGGCCTCCCAAAGTGTTGAGA-------------- 249
||||||||||||.|||||||||||||||||| .||.|||.|||||||||.||||.||.||
Sbjct 3699 CTGGTCTTGAACCCCTGACCTCAAGTGATCCTCCCGCCTTGGCCTCCCAGAGTGCTGGGATTACAGACATGAGC 3772
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3773 CACTGCGCCTGGCCTCAATGAGTAAATGTTTTGCTAAAAAATTTCCCACACTGCCTCAGCATAAAGCCTTACTT 3846
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3847 CAGTGTCAACTTTTGGTGCTGAACAAGGCACTCCTTGGCTGAAACCTTCCCACATTCTATGCATTCATAAGGCT 3920
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3921 TTTGCAGGGTGAACTTTCTGGTGCTGAGCAAGGTTAGAGGGACAGCCAAAGGCTCTCTCACATTGTCCCCACTC 3994
Query 250 -------------------------------------------------------------------------- 249
Sbjct 3995 ATAAAACCTTTCTGTGTTGTGAACTTTCTGGTGCCCTGCAAGGTGGACATTTCTGCTGTAGGATTTCCCACACC 4068
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4069 TGCTGTACACATAAGGGCTTGCTCCAGAGTGAAGTCTCTGGTGGTGAACAAGGCTGGAGCTCTGGCTAAAGGAT 4142
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4143 TTCCCACATTCTTTGCACTCATAAGGACTTTCTCCAATATGGGTTCTTTGATGTTGACCAAGTCCATATTTGGA 4216
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4217 GCTCAAAGATTTCTTACGCAATGTAAATTAGTATAACCACTATGGAGAACAGTTTGGAGGTTCCTCAAAAAACT 4290
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4291 AAAAATAGAGCTACCATATGACCCATCAATCTGACTTCTAGTTATATACCCCAAAGAAAAGAAATCAGTACATT 4364
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4365 GAAGAGATATCTGCCCTCCCATCTTTGTTGCAGCACTATTCACAATAGCCAAGATTTGGAAGTAACCCAAATGT 4438
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4439 CCATCAACAGACAAATGGATAAAGAAAATGTGGTGCATATACACAATGGAGTAGTATTCAGCCATAAAAAAGAA 4512
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4513 TGAGATCTTGTCATCTGCAACAACATGGATGGAACTGGAGGTCCTTAAGGTTAAGCAAAATAATCCAGGCACAG 4586
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4587 AAAGAAAACATTGCATGTTCTCATCTATTTGTGAGAACTAAAAATTAAAACAATTGAACTCATGGAGATAGAGA 4660
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4661 GTAGAAGGATGGTTACCAGAGGCTGGGAAGGGTAGTGAGGGCGAGTGAGGGGGAAGTGGGGTGTTTAATGTGTC 4734
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4735 CAAAAAATGGTCAGAAACAATGAATAAAGTCTAATATATGACAGCAAAAGAGTGTGACTATAGTCAATAATAAT 4808
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4809 CGAATGGTACATTTAAAAATAACTAAAAGTGTATATTTGGATTGTTTGTAACATAAAGGATAAATGCTTGAGGT 4882
Query 250 -------------------------------------------------------------------------- 249
Sbjct 4883 GATGGATACCCCATTTACCCTGATGTGATTGTTACACATTGTATGCCTGTATCAAAGTATCCATATACCCCATG 4956
Query 250 ---------------------------------------------- 249
Sbjct 4957 AATAAATGTATATACCTACTATGCACCTACAAAAATTAAAATAATA 5002
