Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10793
Subject:
XR_002956265.1
Aligned Length:
4529
Identities:
399
Gaps:
4130

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CGGAAGCGCCGGGCGGGGAGGAGAGAAGGAGGAGAGACTTGGAAACTCCGACTGCAAATAATAAAGAAATTGAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AACAATACATTAATATACCATAACACTAAAAAGAGCAGGAGCGAGAGATGAGAAAGGGAATCCAGCCCGCTCTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GAGCAGTACCTGGTGACCGCCGGGGGTGGGGAGGGGGCGGCTGTCGTCGCCGCCGCCGCTGCAGCCTCCATGGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CAAAAGGGCACTGCTAGCCAGCCCCGGCTTCGCCGCCGCCGCCGCCGCTGCCGCCGCCCCGGGCGCGTACATCC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGATCCTCACCACGAACACTTCCACCACCTCCTGTTCCTCCTCCCTCCAAAGCGGCGCCGTAGCCGCCGGCCCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTCCTCCCCAGTGCCCCCGGCGCGGAGCAGACCGCCGGCAGCCTCCTCTACACCACGCCGCACGGACCCTCCAG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CAGAGCCGGGCTGCTGCAGCAGCCACCAGCGCTGGGACGCGGCGGCAGCGGCGGCGGCGGCGGCCCTCCGGCAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AGCGAAGGCTGGAGCTAGGAGAAAGCGGTCATCAGTACCTCTCAGATGGTTTAAAAACCCCCAAGGGCAAAGGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGAGCTGCACTACGAAGTCCAGATAGTCCAAAAACTCCAAAATCTCCCTCAGAAAAAACGCGGTATGATACGTC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TCTTGGTCTGCTCACCAAGAAGTTCATTCAGCTCCTGAGCCAGTCACCCGATGGGGTATTGGATTTGAACAAGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CAGCAGAAGTGCTAAAAGTGCAAAAGAGAAGGATTTATGATATCACCAACGTTCTGGAAGGCATCCACCTCATT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AAGAAGAAGTCTAAAAACAACGTCCAATGGATAGCCTACAAATACATTTGGCAAGTACCCAAGGGCCCATTGAG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  GTTTACTTATGTCCAGAAGAGACTGAAACACACAGTCCAATGAAAACAAACAACCAAGACCACAATGGGAATAT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CCCTAAACCCGCTTCCAAAGACTTGGCTTCAACCAACTCAGGACATAGCGATTGCTCAGTTTCTATGGGAAACC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TTTCTCCTCTGGCCTCCCCAGCCAACCTCTTACAGCAGACTGAGGACCAAATTCCTTCCAACCTAGAAGGACCG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TTTGTGAACTTACTGCCTCCCCTGCTGCAAGAGGACTATCTCCTGAGCCTCGGGGAGGAGGAAGGCATCAGCGA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TCTCTTCGATGCTTACGATTTGGAAAAGCTCCCACTGGTGGAAGACTTCATGTGTAGTTGATTATGCTTCGTGT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GAACTCTCCTTAAAAACCGATATTTTTTTATCATGGAACCAGAACATCTGTCATGCAGTGTTGTCCCTTCCTAC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CTTCTTCCTCCAAGAGAGTATCATGAAGTAAACTACAAACTTCAGAAGAAAGCTGACATTTTAATGAATTTTTT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  AAAAAATTAATAAACAAATTGTCTAAACGCACAGTTGCAGGCTCCCTTGGGAAAGCCCTGCTTTGCTCCAGGCT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CCAAGATCTCCTGGCTAAGTCAGCAAGTGAGAAAATGTGCAATCAGGTGTCTCTCACCCCGAATTGTCCTTCCT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CCTTCCTCCCCGGATTGGCTTGCTGTGCCTGACGGATGGGCTGTAGAATGGGGTCTGGCCACCTGGCCTGCTGG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GAAACAGCAATCTTCCTTAATAGCATTTCAAGCCGTGCCTTCTCCGCAGAATGCATGTCTTTGAGGTCTGCTAA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TATGGAATGGAACTGCAGCAAATGCAAACTTGAAGTCATGCAAAAGTATGAAATGGATTTCTTCAGCTCTTCTT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  AGGAATATTTAAATTACTGTCATAATTCAGTTTAAGCTATGAACTGTGTGTCCCAGTAGGAGGTCAAGAAAACC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TCCACAGCCTTCTGGATGAAGAACCTGTTTTCAAATATACTTGTTGCAGATACAGAAGACTAGTAGAGTTCTGC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CACTCTAAGCTGTTGTGGATTTTCCTGTCTCCATGAACCACTCCCATTCCCCCGTCCCCAATGTGTTTGTGAGT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TTCCAGTTGATTTGTAGCAAATGCCTACTTAGTTCTTTGTGGATTGTTCTAGACTTTTAATTTTTTTAGCTGCC  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ATTTAAGCATTCCTGTGGCACCCATCACCATTTCAATTTAATTGTTTACTTTGAAGCGGTTTTTGCAAATTCAT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  ATTACTTAAGCAGAGGGAGAGAACCTCTACTGATCAGAGCATCTAAACCTGTGTGATCTAAGGTTTATCAGCCT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CTGCAAGGAGCTTTGTCCCATCGTGCTTCCATTCCCAGGAGGGGGAGCTTGGAGCGAGTCAGTCCTGGGGCTTG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CTGACATGGGTGGCCCATTGGAAAGGAGAACCAGGTCAGATGATGTAACAGCCCCAAGGAGCAGCAGGCATGGG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TCCCTCCATCCTTGGGCTTCCCGGGCCCCTGTGACAGGGGAAAGGGCTCTCTTACACCGCACTCAGGGAGACCA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CTTCTCAGGATGGGGTCAGATGGAGAGACCTCTAGGGAGAAAGACATCCCCATTGTGTGAGTGGCATTTCCTTA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  AGCTGGCAGGAACAGGGAGCAGCCCTGTGTCGGGGGCTGGAATAGTTCTGGCCAGACCCCGTTCCCCTTCCTCT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ATGAAGGAATAAGTTGGACCAAGGGAAGTCGGGGACGTAAAAAATGAAGCAAAACAATGCCAGGGTGTCTCCCG  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  CTTTACTCTTCAGGAATGGTGTCCCAAGTTGGAGGCTTTGTGTCAGCTGCAAATCCTACCAGTTATGTCCAAGA  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  ATGGCTTTCCCTCGGGCAGGTGGCAGCGGCCATCTCCCACTGGGAATATGGCGTAGTATCTCCGGTCCATTCCT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  TGGATGCTAAGGACTGCGGGAATGAGGGAGTCAGATAAAGAACAAACCTCGAAACGAACAGTTAAATTGAAATG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  CTATGTGCCTGACCCAATGGTAGGCACATAGTAGGCACTCAACTCATATGTTTAATTGAATTGAAAATATCCCT  2960

Query    1  -----------------------------------------------------------------------ATG  3
                                                                                   |||
Sbjct 2961  TAGGAAAAAAAAAAAACACACAAAAAACCACAAGAGCCCCAGCCAGTTTACTCCAGGTAGATTTCCACAATATG  3034

Query    4  CAAAGTGGTGGTGGGGTCAAGACAGATGACACCAGCACTTTAAACTCTTTGTGTGGGTATGCGTGGGTGTATGT  77
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035  CAAAGTGGTGGTGGGGTCAAGACAGATGACACCAGCACTTTAAACTCTTTGTGTGGGTATGCGTGGGTGTATGT  3108

Query   78  TTGGGAAGAAAAACAAAGGTGCAGACTATCTTCCTTTTTTTCTTCTTCAGCCTCCATCCCTGGCCTCCTCCCCT  151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109  TTGGGAAGAAAAACAAAGGTGCAGACTATCTTCCTTTTTTTCTTCTTCAGCCTCCATCCCTGGCCTCCTCCCCT  3182

Query  152  CACACACACTGGACTTGGTACAAAATGTCGGTGTGGTCCTAGATGAAGCATTGGGGTGGGGGAGGGAGAGGGAG  225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183  CACACACACTGGACTTGGTACAAAATGTCGGTGTGGTCCTAGATGAAGCATTGGGGTGGGGGAGGGAGAGGGAG  3256

Query  226  CTTTGTGTTAAGTGCCTACTGGAAATGCACTGTGGGGTTTTTTCCTGTATGGGAAACCATTTATGCCAAGCTTT  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257  CTTTGTGTTAAGTGCCTACTGGAAATGCACTGTGGGGTTTTTTCCTGTATGGGAAACCATTTATGCCAAGCTTT  3330

Query  300  TCCCCATTTCCCATATTTATCTCATCTGGTTAGCTGCCTCTGCTTCCAGCTTTGTGTAATTCTCTTTGCCAGCT  373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331  TCCCCATTTCCCATATTTATCTCATCTGGTTAGCTGCCTCTGCTTCCAGCTTTGTGTAATTCTCTTTGCCAGCT  3404

Query  374  GCACAAAGCTGATTTTTTCCAAAGTC------------------------------------------------  399
            ||||||||||||||||||||||||||                                                
Sbjct 3405  GCACAAAGCTGATTTTTTCCAAAGTCTAAAGACTGAGCTCACCTGGCTAGATTGTTGTGTGTTTTGTTGAATTT  3478

Query  400  --------------------------------------------------------------------------  399
                                                                                      
Sbjct 3479  TTTCATAATGTAATGCCGTATTTATTGTTTTTAAAATGAAAGGAATACTAATAAGTCTTAAAAGTTCCTTCATG  3552

Query  400  --------------------------------------------------------------------------  399
                                                                                      
Sbjct 3553  CATAAGATTTTTTTCCAGTTACTGGGTTTAACTGGTGTACATTAATTAGATGTCCATACTGTATTTTGTTTGCA  3626

Query  400  --------------------------------------------------------------------------  399
                                                                                      
Sbjct 3627  TTAAGTAATTTTCTTTTTGACTTAGTATCCGGCACACAAAGTGGGTTAGTACTACAGTATTTGCGTTACTTTAA  3700

Query  400  --------------------------------------------------------------------------  399
                                                                                      
Sbjct 3701  GTACTAAGTATGCAGGTTTCCTGGTACCATTGAGTTGCTGCTATTAAAGCTCACACACGAAATGGCTAAAAGTT  3774

Query  400  --------------------------------------------------------------------------  399
                                                                                      
Sbjct 3775  ACAAGTGTGCAAATTATGACTGCGTGAGCCTTAGAAAATAAAATGTATAAAGGGCAACACATGAGCTGTCAAAC  3848

Query  400  --------------------------------------------------------------------------  399
                                                                                      
Sbjct 3849  AGTGTTAGGAGTGTGTTTATATGTACAGAGTTGTGCATAGCAATCGTTTTATTTAAGTTGATATGTAGTCTACT  3922

Query  400  --------------------------------------------------------------------------  399
                                                                                      
Sbjct 3923  CACATTTTCATTATTTAGCAATTTTGTACAAAAATAGCAATTAATTTGTAAACACTGCCAGAATACTTTCTAGC  3996

Query  400  --------------------------------------------------------------------------  399
                                                                                      
Sbjct 3997  TGCTTTGTAATTTTTTAAGAGTGTTATTTTGTTTTTGTTTTTCTGTTCTTTGTTGTGGCTCTTGTTTTCATTTT  4070

Query  400  --------------------------------------------------------------------------  399
                                                                                      
Sbjct 4071  TGTTGTACGTGTAGATCTGTAAATAAAATTGCAGTATTTAAAGCTTAAGCTTTCAGGAAAAAGAAAATAAGAAT  4144

Query  400  --------------------------------------------------------------------------  399
                                                                                      
Sbjct 4145  TCAGTGTGTGCATGACAACTCGTGTGTATGAGAAGGAGGGATATGAAGGAAGATGGCTTGCAGAGTAAGTCGGG  4218

Query  400  --------------------------------------------------------------------------  399
                                                                                      
Sbjct 4219  TGGCAATTGTCAGGGTGTGGGAATTTCTTTTCCTACGGGGTACGTGATTTTGTAAAAAGGAAGTATTTCTCCCA  4292

Query  400  --------------------------------------------------------------------------  399
                                                                                      
Sbjct 4293  AAATTGGGAGTAGGCAAACTACTAATCAGTTTAGCTTTGTGTTGTATGCTAGTTTAAAAAAGAAAATATGTAAT  4366

Query  400  --------------------------------------------------------------------------  399
                                                                                      
Sbjct 4367  ATAATGTAAAAAAAAACAAAAAAAAGCTTTTATGATGGATTTTGTAAATAGATTTGTTACAGGGTGACCTGTTC  4440

Query  400  --------------------------------------------------------------------------  399
                                                                                      
Sbjct 4441  TCTAGCTGTGATCTTACCACTTCAAATGGGTGTAATTTGAATAAATTTTGTATGGTAAAGGATCAATAAAATGA  4514

Query  400  ---------------  399
                           
Sbjct 4515  TTTTTTTTAAGAGTT  4529

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