Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10803
Subject:
NM_010141.4
Aligned Length:
2996
Identities:
778
Gaps:
2161

Alignment

Query    1  ATGGTTTTTCAAACTCGGTACCCTTCATGGATTATTTTATGCTACATCTGGCTGCTCCGCTTTGCACACACAGG  74
            ||||||.||||||||||||.||||||.|||||||||||.||.||||||||||||||..|||||||||||||.||
Sbjct    1  ATGGTTGTTCAAACTCGGTTCCCTTCGTGGATTATTTTGTGTTACATCTGGCTGCTTGGCTTTGCACACACGGG  74

Query   75  GGAGGCGCAGGCTGCGAAGGAAGTACTACTGCTGGATTCTAAAGCACAACAAACAGAGTTGGAGTGGATTTCCT  148
            ||||||||||||||||||||||||||||.|.|||||.||.|||||||||||||||||.|||||.||||||||||
Sbjct   75  GGAGGCGCAGGCTGCGAAGGAAGTACTATTACTGGACTCGAAAGCACAACAAACAGAATTGGAATGGATTTCCT  148

Query  149  CTCCACCCAATGGGTGGGAAGAAATTAGTGGTTTGGATGAGAACTATACCCCGATACGAACATACCAGGTGTGC  222
            |||||||||.||||||||||||||||||||||||||||||||||||.||.||||||.|||||||||||||||||
Sbjct  149  CTCCACCCAGTGGGTGGGAAGAAATTAGTGGTTTGGATGAGAACTACACTCCGATAAGAACATACCAGGTGTGC  222

Query  223  CAAGTCATGGAGCCCAACCAAAACAACTGGCTGCGGACTAACTGGATTTCCAAAGGCAATGCACAAAGGATTTT  296
            ||.|||||||||||||||||.|||||||||||||||||||||||||||||.||||||||.||||||||||||||
Sbjct  223  CAGGTCATGGAGCCCAACCAGAACAACTGGCTGCGGACTAACTGGATTTCTAAAGGCAACGCACAAAGGATTTT  296

Query  297  TGTAGAATTGAAATTCACCCTGAGGGATTGTAACAGTCTTCCTGGAGTACTGGGAACTTGCAAGGAAACATTTA  370
            |||||||||||||||||||.|||||||||||||.||||||||.|||||.||||||||||||||||||||.||||
Sbjct  297  TGTAGAATTGAAATTCACCTTGAGGGATTGTAATAGTCTTCCCGGAGTCCTGGGAACTTGCAAGGAAACGTTTA  370

Query  371  ATTTGTACTATTATGAAACAGACTATGACACTGGCAGGAATGTAAGAGAAAACCTCTATGTAAAAATAGACACC  444
            |||||||||||||||||||||||||.|||||.|||||||||.||.||||||||||.|||||.||||||||||||
Sbjct  371  ATTTGTACTATTATGAAACAGACTACGACACCGGCAGGAATATACGAGAAAACCTTTATGTTAAAATAGACACC  444

Query  445  ATTGCTGCAGATGAAAGTTTTACCCAAGGTGACCTTGGTGAAAGAAAGATGAAGCTTAACACTGAGGTGAGAGA  518
            ||||||||||||||||||||.||.||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct  445  ATTGCTGCAGATGAAAGTTTCACACAAGGTGACCTTGGTGAAAGAAAGATGAAGCTGAACACTGAGGTGAGAGA  518

Query  519  GATTGGACCTTTGTCCAAAAAGGGATTCTATCTTGCCTTTCAGGATGTAGGGGCTTGCATAGCTTTGGTTTCTG  592
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct  519  GATTGGACCTTTGTCCAAAAAGGGATTCTATCTTGCCTTTCAGGATGTAGGGGCTTGCATAGCATTGGTTTCTG  592

Query  593  TCAAAGTGTACTACAAGAAGTGCTGGTCCATTATTGAGAACTTAGCTATCTTTCCAGATACAGTGACTGGTTCA  666
            ||||||||||||||||||||||||||||||||.||||||||||||||.|||||||||||||||||||||||||.
Sbjct  593  TCAAAGTGTACTACAAGAAGTGCTGGTCCATTGTTGAGAACTTAGCTGTCTTTCCAGATACAGTGACTGGTTCG  666

Query  667  GAATTTTCCTCTTTAGTCGAGGTTCGAGGGACATGTGTCAGCAGTGCAGAGGAAGAAGCGGAAAACGCCCCCAG  740
            |||||||||||.|||||||||||.||.||||||||||||||||||||.||||||||.||.|||||..|||||||
Sbjct  667  GAATTTTCCTCCTTAGTCGAGGTCCGTGGGACATGTGTCAGCAGTGCCGAGGAAGAGGCAGAAAATTCCCCCAG  740

Query  741  GATGCACTGCAGTGCAGAAGGAGAATGGTTAGTGCCCATTGGAAAATGTATCTGCAAAGCAGGCTACCAGCAAA  814
            .|||||.|||||||||||||||||.|||.||||.||||||||||||||.|||||||||||||||||.|||||||
Sbjct  741  AATGCATTGCAGTGCAGAAGGAGAGTGGCTAGTACCCATTGGAAAATGCATCTGCAAAGCAGGCTATCAGCAAA  814

Query  815  AAGGAGACACTTGTGAA---TGTAAG------------------------------------------------  837
            ||||.||||||||.|||   |||  |                                                
Sbjct  815  AAGGGGACACTTGCGAACCCTGT--GGCCGCAGGTTCTACAAATCTTCCTCTCAGGATCTCCAGTGTTCTCGTT  886

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct  887  GTCCAACCCACAGCTTCTCTGACCGAGAAGGATCATCCAGGTGTGAATGTGAAGATGGGTACTACAGAGCTCCT  960

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct  961  TCTGATCCACCATACGTTGCATGCACGAGGCCTCCCTCTGCACCACAGAACCTTATTTTCAATATCAATCAAAC  1034

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 1035  GACTGTAAGTTTGGAATGGAGTCCTCCGGCTGACAACGGGGGAAGAAACGATGTCACCTACAGAATACTGTGTA  1108

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 1109  AGCGGTGCAGTTGGGAACAGGGAGAATGTGTGCCATGCGGAAGTAACATTGGATACATGCCCCAGCAGACGGGA  1182

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 1183  TTAGAGGATAACTATGTCACTGTCATGGACCTACTTGCCCATGCAAATTACACTTTCGAAGTTGAAGCTGTAAA  1256

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 1257  TGGAGTTTCGGACTTAAGCAGATCCCAGAGGCTCTTCGCTGCTGTTAGCATCACCACCGGTCAAGCAGCTCCCT  1330

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 1331  CGCAAGTGAGTGGAGTCATGAAGGAGCGAGTACTGCAGCGGAGTGTGCAGCTTTCCTGGCAGGAGCCGGAGCAT  1404

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 1405  CCCAATGGAGTCATCACGGAATATGAAATCAAGTATTATGAGAAAGATCAACGGGAAAGGACGTACTCAACACT  1478

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 1479  CAAAACCAAGTCCACCTCCGCCTCCATTAATAATCTGAAACCGGGAACAGTGTACGTCTTTCAGATCCGGGCGG  1552

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 1553  TCACTGCTGCCGGTTATGGAAACTACAGCCCTAGGCTTGATGTTGCCACACTTGAGGAAGCTTCAGGTAAAATG  1626

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 1627  TTTGAAGCGACAGCAGTCTCCAGTGAACAGAATCCTGTCATCATAATTGCTGTAGTGGCTGTAGCAGGGACCAT  1700

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 1701  CATCTTGGTGTTCATGGTGTTCGGCTTCATCATTGGAAGAAGGCACTGTGGTTATAGCAAGGCTGACCAAGAAG  1774

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 1775  GGGATGAAGAACTCTACTTTCATTTTAAATTTCCAGGCACCAAAACCTACATTGACCCTGAAACCTATGAGGAC  1848

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 1849  CCAAATAGAGCTGTCCATCAATTCGCCAAGGAGCTAGATGCCTCCTGTATTAAAATTGAGCGTGTGATTGGTGC  1922

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 1923  AGGAGAATTTGGAGAAGTTTGCAGTGGTCGTTTGAAACTTCCGGGGAAGAGAGATGTTGCAGTGGCCATAAAAA  1996

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 1997  CCCTGAAAGTTGGTTACACAGAAAAGCAAAGGAGGGACTTTTTATGCGAAGCAAGCATCATGGGGCAATTTGAC  2070

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 2071  CACCCAAATGTCGTCCATTTGGAAGGGGTTGTTACAAGAGGGAAGCCTGTCATGATTGTGATAGAGTTCATGGA  2144

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 2145  GAATGGAGCCCTGGATGCATTTCTCAGGAAACACGATGGGCAGTTTACAGTCATTCAGTTGGTAGGAATGTTGA  2218

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 2219  GAGGTATTGCCGCTGGGATGCGATACTTGGCTGATATGGGATACGTTCACAGGGACCTTGCAGCGCGCAACATC  2292

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 2293  CTTGTCAACAGCAATCTTGTTTGTAAAGTGTCAGATTTTGGCCTTTCCCGGGTTATAGAGGATGATCCCGAAGC  2366

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 2367  TGTCTACACCACGACTGGTGGAAAAATTCCAGTAAGGTGGACTGCACCGGAAGCCATTCAATACCGGAAGTTCA  2440

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 2441  CCTCAGCCAGCGATGTGTGGAGCTATGGGATTGTCATGTGGGAAGTGATGTCTTATGGAGAAAGACCTTACTGG  2514

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 2515  GACATGTCAAATCAAGATGTCATTAAAGCGATAGAAGAAGGTTATCGTTTGCCGGCGCCCATGGATTGCCCAGC  2588

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 2589  TGGTCTTCACCAGCTAATGCTGGATTGTTGGCAGAAAGATCGGGCGGAAAGGCCAAAGTTTGAGCAGATAGTCG  2662

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 2663  GAATTCTAGACAAAATGATTCGAAACCCAAGTAGTCTGAAAACACCCCTGGGAACTTGTAGTAGACCCTTAAGC  2736

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 2737  CCTCTTCTGGACCAGAGCACTCCTGACTTCACTGCCTTCTGTTCAGTTGGAGAATGGTTGCAAGCTATTAAAAT  2810

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 2811  GGAAAGGTATAAGGACAACTTCACAGCAGCGGGTTACAACTCACTCGAGTCAGTGGCCAGGATGACTATCGATG  2884

Query  838  --------------------------------------------------------------------------  837
                                                                                      
Sbjct 2885  ATGTGATGAGTTTAGGGATCACACTGGTTGGCCATCAAAAGAAGATCATGAGCAGCATCCAGACTATGCGGGCA  2958

Query  838  ------------------------------------  837
                                                
Sbjct 2959  CAAATGTTGCATTTACACGGAACAGGCATCCAAGTG  2994

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