Nucleotide Global Alignment

Description

Query:
ccsbBroad304_10805
Subject:
NM_001146351.1
Aligned Length:
3052
Identities:
1920
Gaps:
875

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCTACTGAGGGCACGACTGGCTCAGGGAGCAGAGTGGTGGCGGGCATGGTGTGCAGTCTGTGGCTCCTGGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCTAGGGTCATCAGTTCTAGCTCTGGAAGAGGTGCTGCTGGATACCACAGGAGAGACCTCTGAGATTGGCTGGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCACCTACCCGCCAGGTGGGTGGGATGAGGTGAGTGTTCTAGATGACCAGCGCCGTCTGACTCGGACCTTCGAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCATGCCACGTTGCAGGGCTCCCTCCTGGTTCTGGCCAGGACAATTGGCTGCAGACACACTTTGTGGAACGGCG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGGGGCCCAGAGGGCACACATCCGCCTTCACTTCTCTGTACGAGCCTGTTCCAGCCTGGGTGTGAGTGGGGGTA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCTGCCGAGAGACCTTCACCCTTTACTACCGGCAGGCTGATGAGCCAGACGGCCCCGACAGTATTGCGGCCTGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CACCTCAAACGCTGGACCAAAGTGGACACAATTGCCGCAGATGAGAGCTTCCCTGCCTCCTCTTCCTCTTCCTC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ATGGGCTGTGGGACCCCACAGGACCGGTCAGCGGGTGGGACTGCAGCTGAATGTCAAAGAGCGCAGCTTTGGTC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CTCTCACTCAGCGTGGCTTCTATGTGGCCTTCCAGGACACAGGGGCCTGCCTGGCCCTTGTGGCAGTCAAGCTC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTCTCCTACACCTGTCCCTCCGTCCTGCGTGCCTTTGCCTCTTTTCCTGAGACACAGGCCAGTGGAGCTGGAGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GGCTTCCTTAGTGGCAGCTGTGGGCACCTGTGTAGCTCATGCAGAACCAGAGGAGGATGGAGTAGGAGGCCAGG  814

Query    1  -----------------------------------------------ATGGTAGCTGTCGGGGGCTGCCGCTGC  27
                                                           |||||||||||.||.||||||||||||
Sbjct  815  CAGGGGGCAGCCCCCCAAGGTTACACTGTAATGGCGAAGGCAGGTGGATGGTAGCTGTGGGAGGCTGCCGCTGC  888

Query   28  CAGCCTGGATACCAACCAGCACGAGGAGACAAGGCCTGCCAAGCCTGCCCACGGGGGCT-CTATAAGTCTTCT-  99
            |||||||||.||||.||.||.||.|||||||||..||||||||||||||| .|.|||.| |||||||.| .|| 
Sbjct  889  CAGCCTGGACACCAGCCTGCTCGTGGAGACAAGCTCTGCCAAGCCTGCCC-TGAGGGATCCTATAAGGC-CCTG  960

Query  100  GCTGGGAATGCTCCCTGCTCACCATGCCCTGCCCGCAGTCACGCTCCCAACCCAGCAGCCCCCGTTTGCCCCTG  173
            ||||||||||.||||||.|||||.||.||.||||||||.|||.|.||..||||.||||||||.||||||||.||
Sbjct  961  GCTGGGAATGTTCCCTGTTCACCGTGTCCAGCCCGCAGCCACTCCCCTGACCCTGCAGCCCCAGTTTGCCCATG  1034

Query  174  CCTGGAGGGCTTCTACCGGGCCAGTTCCGACCCACCAGAGGCCCCCTGCACTGGTCCTCCATCGGCTCCCCAGG  247
            .||..|.|||||||||.||||||||||.||||||||||||||.||||||||||||||||||||||||||||.||
Sbjct 1035  TCTCCAAGGCTTCTACAGGGCCAGTTCGGACCCACCAGAGGCTCCCTGCACTGGTCCTCCATCGGCTCCCCGGG  1108

Query  248  AGCTTTGGTTTGAGGTGCAAGGCTCAGCACTCATGCTACACTGGCGCCTGCCTCGGGAGCTGGGGGGTCGAGGG  321
            ||||.||||||||||||||||||||.|||||||||||.||||||||.|||||||.|||||||||.||.||||||
Sbjct 1109  AGCTATGGTTTGAGGTGCAAGGCTCGGCACTCATGCTGCACTGGCGTCTGCCTCAGGAGCTGGGTGGACGAGGG  1182

Query  322  GACCTGCTCTTCAATGTCGTGTGCAAGGAGTGTGAAGGCCGCCAGGA-ACCTGCCAGCGGTGGTGGGGGCACTT  394
            ||.||||||||||||||.||||||||||||||||.|||.|.|  ||| |.|  |||||   .|||||||.|..|
Sbjct 1183  GATCTGCTCTTCAATGTTGTGTGCAAGGAGTGTGGAGGTCAC--GGAGAGC--CCAGC---AGTGGGGGGATGT  1249

Query  395  GTCACCGCTGCAGGGATGAGGTCCACTTCGACCCTCGCCAGAGAGGCCTGACTGAGAGCCGAGTGTTAGTGGGG  468
            |||.||||||||||||.|||||.||.||||||||.||||||||.||.|||||||||||.|||||||||||.|||
Sbjct 1250  GTCGCCGCTGCAGGGACGAGGTGCATTTCGACCCCCGCCAGAGGGGACTGACTGAGAGTCGAGTGTTAGTTGGG  1323

Query  469  GGACTCCGGGCACACGTACCCTACATCTTAGAGGTGCAGGCTGTTAATGGGGTGTCTGAGCTCAGCCCTGACCC  542
            ||.|||||.||||||||.||.||||||||.||.|||||||||||.|||||||||||||||||||||||||||||
Sbjct 1324  GGGCTCCGAGCACACGTGCCATACATCTTGGAAGTGCAGGCTGTCAATGGGGTGTCTGAGCTCAGCCCTGACCC  1397

Query  543  TCCTCAGGCTGCAGCCATCAATGTCAGCACCAGCCATGAAGTGCCCTCTGCTGTCCCTGTGGTGCACCAGGTGA  616
            |||.|||||.||||||||||||||||||||||||||.|||||.||.|||||.|||||||||.||||||||||||
Sbjct 1398  TCCCCAGGCAGCAGCCATCAATGTCAGCACCAGCCACGAAGTCCCTTCTGCAGTCCCTGTGATGCACCAGGTGA  1471

Query  617  GCCGGGCATCCAACAGCATCACGGTGTCCTGGCCGCAGCCCGACCAGACCAATGGGAACATCCTGGACTATCAG  690
            ||||||||.|||||||||||||.||.||||||||.|||||.||.||.||.||||||||||||||.|||||.|||
Sbjct 1472  GCCGGGCAGCCAACAGCATCACAGTATCCTGGCCACAGCCTGAGCAAACAAATGGGAACATCCTCGACTACCAG  1545

Query  691  CTCCGCTACTATGACCAGGCAGAAGACGAATCCCACTCCTTCACCCTGACCAGCGAGACCAACACTGCCACCGT  764
            ||.|||||||||||||||||||||||.||||||||||||||||||.|||||||.|||||||||||||||||.||
Sbjct 1546  CTGCGCTACTATGACCAGGCAGAAGATGAATCCCACTCCTTCACCATGACCAGTGAGACCAACACTGCCACTGT  1619

Query  765  GACACAGCTGAGCCCTGGCCACATCTATGGTTTCCAGGTGCGGGCCCGGACTGCTGCCGGCCACGGCCCCTACG  838
            |||||.|.||||||||||||||||||||||.||||||||||||||.||||||||.||.||||||||||||||.|
Sbjct 1620  GACACGGTTGAGCCCTGGCCACATCTATGGCTTCCAGGTGCGGGCACGGACTGCAGCTGGCCACGGCCCCTATG  1693

Query  839  GGGGCAAAGTCTATTTCCAGACACTTCCTCAAGGGGAGCTGTCTTCCCAGCTTCCGGA-AAGACTCTCCTTGGT  911
            ||||||||||||||||.||||||.|.||||||||.||||||||.|||||||||||.|| ||| ||.||||||||
Sbjct 1694  GGGGCAAAGTCTATTTTCAGACATTGCCTCAAGGTGAGCTGTCCTCCCAGCTTCCAGAGAAG-CTGTCCTTGGT  1766

Query  912  GATCGGCTCCATCCTGGGGGCTTTGGCCTTCCTCCTGCTGGCAGCCATCACCGTGCTGGCGGTCGTCTTCCAGC  985
            |||.||.||||||||||||||.|||||||||||.||.||||||||||||||.||.|||||.|||.|||||||||
Sbjct 1767  GATTGGTTCCATCCTGGGGGCCTTGGCCTTCCTTCTACTGGCAGCCATCACTGTACTGGCTGTCATCTTCCAGC  1840

Query  986  GGAAGCGGCGTGGGACTGGCTACACGGAGCAGCTGCAGCAATACAGCAGCCCAGGACTCGGGGTGAAGTATTAC  1059
            |||||||.||||||||.||||||||.||.||.|||||.||||||||||||||||||||.||.||||||||||||
Sbjct 1841  GGAAGCGCCGTGGGACCGGCTACACAGAACAACTGCAACAATACAGCAGCCCAGGACTTGGAGTGAAGTATTAC  1914

Query 1060  ATCGACCCCTCCACCTACGAGGACCCCTGTCAGGCCATCCGAGAACTTGCCCGGGAAGTCGATCCTGCTTATAT  1133
            ||.|||||.||.||.|||||.||||||||.|||||||||.||||.|||||.||.||.||.||.|||.|.|||||
Sbjct 1915  ATTGACCCTTCTACATACGATGACCCCTGCCAGGCCATCAGAGAGCTTGCTCGAGAGGTTGACCCTACATATAT  1988

Query 1134  CAAGATTGAGGAGGTCATTGGGACAGGCTCTTTTGGAGAAGTGCGCCAGGGCCGCCTGCAGCCACGGGGACGGA  1207
            |||||||||.||.|||||||||.||||.||.||||||||||||||.|.||||||.|||||.||.||||||.|||
Sbjct 1989  CAAGATTGAAGAAGTCATTGGGGCAGGTTCCTTTGGAGAAGTGCGTCGGGGCCGACTGCAACCCCGGGGAAGGA  2062

Query 1208  GGGAGCAGACTGTGGCCATCCAGGCCCTGTGGGCCGGGGGCGCCGAAAGCCTGCAGATGACCTTCCTGGGCCGG  1281
            ||||.||..|||||||.|||||||||.|||||||.|||||.||.||.||||||.||||||||||.|||||.|||
Sbjct 2063  GGGAACAAGCTGTGGCTATCCAGGCCTTGTGGGCAGGGGGTGCTGAGAGCCTGAAGATGACCTTTCTGGGTCGG  2136

Query 1282  GCCGCAGTGCTGGGTCAGTTCCAGCACCCCAACATCCTGCGGCTGGAGGGCGTGGTCACCAAGAGCCGACCCCT  1355
            ||.|||.|||||||.|||||||||||||||||.||||||||||||||.||.||.|||||.|||||.||.||..|
Sbjct 2137  GCAGCACTGCTGGGCCAGTTCCAGCACCCCAATATCCTGCGGCTGGAAGGTGTAGTCACTAAGAGTCGGCCTGT  2210

Query 1356  CATGGTGCTGACGGAGTTCATGGAGCTTGGCCCCCTGGACAGCTTCCTCAGGCAGCGGGAGGGCCAGTTCAGCA  1429
            ||||||||||||.||..|||||||.|||||.||||||||||||||.||.||||||||.||||||||||||||.|
Sbjct 2211  CATGGTGCTGACAGAACTCATGGAACTTGGTCCCCTGGACAGCTTTCTTAGGCAGCGAGAGGGCCAGTTCAGTA  2284

Query 1430  GCCTGCAGCTGGTGGCCATGCAGCGGGGAGTGGCTGCTGCCATGCAGTACCTGTCCAGCTTTGCCTTCGTCCAT  1503
            ||||||||||||||||||||||||||||.|||||||||||||||||||||.||||||||||||||||.||.||.
Sbjct 2285  GCCTGCAGCTGGTGGCCATGCAGCGGGGTGTGGCTGCTGCCATGCAGTACTTGTCCAGCTTTGCCTTTGTTCAC  2358

Query 1504  CGCTCGCTGTCTGCCCACAGCGTGCTGGTGAATAGCCACTTGGTGTGCAAGGTGGCCCGTCTTGGCCACAGTCC  1577
            ||..|.||.||.||||..||.|||||.||||||||||||.|||||||.||||||||.|||||.|||||||||||
Sbjct 2359  CGAGCACTCTCGGCCCGAAGTGTGCTAGTGAATAGCCACCTGGTGTGTAAGGTGGCACGTCTCGGCCACAGTCC  2432

Query 1578  TCAGGGCCCAAGTTGTTTGCTTCGCTGGGCAGCCCCAGAGGTCATTGCACATGGAAAGCATACAACATCCAGTG  1651
            ||||||..||||||..||||||||||||||||||||||||||||||.|||||||||||.||||||||||.||.|
Sbjct 2433  TCAGGGTTCAAGTTCCTTGCTTCGCTGGGCAGCCCCAGAGGTCATTACACATGGAAAGTATACAACATCTAGCG  2506

Query 1652  ATGTCTGGAGCTTTGGGATACTCATGTGGGAAGTGATGAGTTATGGAGAACGGCCTTACTGGGACATGAGTGAG  1725
            ||||||||||||||||.|||||||||||||||||||||||.||||||||||||||.|||||||||||||..|||
Sbjct 2507  ATGTCTGGAGCTTTGGCATACTCATGTGGGAAGTGATGAGCTATGGAGAACGGCCCTACTGGGACATGAACGAG  2580

Query 1726  CAGGAGGTACTAAATGCAATAGAGCAGGAGTTCCGGCTGCCCCCGCCTCCAGGCTGTCCTCCTGGATTACATCT  1799
            ||||||||||||||||||||||||||.|||||||||||||||||.||||||||.||.||.||||||.|||||||
Sbjct 2581  CAGGAGGTACTAAATGCAATAGAGCAAGAGTTCCGGCTGCCCCCACCTCCAGGGTGCCCCCCTGGACTACATCT  2654

Query 1800  ACTTATGTTGGACACTTGGCAGAAGGACCGTGCCCGGCGGCCTCATTTTGACCAGCTGGTGGCTGCATTTGACA  1873
            |||.|||.|.||||||||||||||||||||||||||.|||||||||||||||||||||||.|||||||||||||
Sbjct 2655  ACTGATGCTAGACACTTGGCAGAAGGACCGTGCCCGTCGGCCTCATTTTGACCAGCTGGTAGCTGCATTTGACA  2728

Query 1874  AGATGATCCGCAAGCCAGATACCCTGCAGGCTGGCGGGGACCCAGGGGAAAGGCCTTCCCAGGCCCTTCTGACC  1947
            |||||||.||||||||.|||||.||.|||||||..||||.|.|.|||||.||||||||||||||.|||||||.|
Sbjct 2729  AGATGATTCGCAAGCCTGATACTCTCCAGGCTGAAGGGGGCTCCGGGGACAGGCCTTCCCAGGCTCTTCTGAAC  2802

Query 1948  CCTGTGGCCCTGGACTTTCCTTGTCTGGACTCACCCCAGGCCTGGCTTTCAGCCATTGGACTGGAGTGCTACCA  2021
            |||||||||.|||||||.|||||.||||||||.|||||||||||||||||||||||||||||.|||||||||||
Sbjct 2803  CCTGTGGCCTTGGACTTCCCTTGCCTGGACTCTCCCCAGGCCTGGCTTTCAGCCATTGGACTAGAGTGCTACCA  2876

Query 2022  GGACAACTTCTCCAAGTTTGGCCTCTGTACCTTCAGTGATGTGGCTCAGCTCAGCCTAGAAGACCTGCCTGCCC  2095
            |||||||||||||||||||||.||.|..|||||||||||||||||||||||||||||.|||||||||||.|.||
Sbjct 2877  GGACAACTTCTCCAAGTTTGGTCTTTCCACCTTCAGTGATGTGGCTCAGCTCAGCCTGGAAGACCTGCCAGGCC  2950

Query 2096  TGGGCATCACCCTGGCTGGCCACCAGAAGAAGCTGCTGCACCACATCCAGCTCCTTCAGCAACACCTGAGGCAG  2169
            |||||||||||||.|||||||||||||||||.||.||||||.||||.||||||||.|||||.||||||||||||
Sbjct 2951  TGGGCATCACCCTAGCTGGCCACCAGAAGAAACTTCTGCACAACATTCAGCTCCTCCAGCAGCACCTGAGGCAG  3024

Query 2170  CAGGGCTCAGTGGAGGTC  2187
            |..|||||||||||.||.
Sbjct 3025  CCAGGCTCAGTGGAAGTG  3042

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