Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10874
- Subject:
- XR_001743373.1
- Aligned Length:
- 3243
- Identities:
- 943
- Gaps:
- 2165
Alignment
Query 1 -------------ATGC--------GGGTCACGGCGCCCCGAACCGTCCTCCTGCTGCTCTCGGGAGCCCTGGC 53
|.|| ||||||.|||||||||||.|.||||||||||||||||.||.||||||||
Sbjct 1 ATATTTTTCCCAGACGCGGAGGTTGGGGTCATGGCGCCCCGAAGCCTCCTCCTGCTGCTCTCAGGGGCCCTGGC 74
Query 54 CCTGACCGAGACCTGGGCCGGCTCCCACTCCATGAGGTATTTCTACACCGCCATGTCCCGGCCCGGCCGCGGGG 127
|||||||||.||.|||||.||||||||||||.|||||||||||..||||||..||||.||||||||||||||||
Sbjct 75 CCTGACCGATACTTGGGCGGGCTCCCACTCCTTGAGGTATTTCAGCACCGCTGTGTCGCGGCCCGGCCGCGGGG 148
Query 128 AGCCCCGCTTCATCTCAGTGGGCTACGTGGACGACACGCAGTTCGTGAGGTTCGACAGCGACGCCGCGAGTCCG 201
|||||||||.||||.|.||||..|||||.|||||||||||.|||.||.|||||||||||||||||||||.||||
Sbjct 149 AGCCCCGCTACATCGCCGTGGAGTACGTAGACGACACGCAATTCCTGCGGTTCGACAGCGACGCCGCGATTCCG 222
Query 202 AGAGA-GGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCGGAACACACAGATCTGCA 274
|| || |||||||||||.|||||||.|.|||||.|||||||||.||||||||||..|||.||||..|..|..||
Sbjct 223 AG-GATGGAGCCGCGGGAGCCGTGGGTGGAGCAAGAGGGGCCGCAGTATTGGGAGTGGACCACAGGGTACGCCA 295
Query 275 AGACCAACACACAGACTTACCGAGAGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCGGGTCT 348
||.|||||.||||||||.||||||.|..||||.|||||||||.|.||..||||||||||||||||||.||||||
Sbjct 296 AGGCCAACGCACAGACTGACCGAGTGGCCCTGAGGAACCTGCTCCGCCGCTACAACCAGAGCGAGGCTGGGTCT 369
Query 349 CACACCCTCCAGAGGATGTACGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGCATGACCAGTACGC 422
||||||||||||.|.|||.|.|||||||||.|||||||.|||||.|||||||||||||||.||.|||||.||||
Sbjct 370 CACACCCTCCAGGGAATGAATGGCTGCGACATGGGGCCCGACGGACGCCTCCTCCGCGGGTATCACCAGCACGC 443
Query 423 CTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGAGCTCCTGGACCGCGGCGGACACGGCGGCTCAGA 496
.|||||||||||||||||||||.|||||||||||||||||.||||||||||||||||||||||.|.||||||||
Sbjct 444 GTACGACGGCAAGGATTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACCGTGGCTCAGA 517
Query 497 TCACCCAGCGCAAGTGGGAGGCGGCCCGTGAG------GCGGAGCAGCTGAGAGCCTACCTGGAGGGCCTGTGC 564
|||||||||||...|..||||| .||| ||.|||.||.|.||..||||||||||||||..||||
Sbjct 518 TCACCCAGCGCTTCTATGAGGC------AGAGGAATATGCAGAGGAGTTCAGGACCTACCTGGAGGGCGAGTGC 585
Query 565 GTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGGACCCCCCAAAGACACATGT 638
.||||||.|||||||||||||.|||||||.||||||||||||||.||||||||.||.||.||||||.||||.||
Sbjct 586 CTGGAGTTGCTCCGCAGATACTTGGAGAATGGGAAGGAGACGCTACAGCGCGCAGATCCTCCAAAGGCACACGT 659
Query 639 GACCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCA 712
..||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGCCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCA 733
Query 713 CACTGACCTGGCAGCGGGATGGCGAGGACCAAACTCAGGACACCGAGCTTGTGGAGACCAGACCAGCAGGAGAT 786
|.||||||||||||||||||||.|||||.||.||.||||||||.|||||||||||||||||.||.|||||.|||
Sbjct 734 CGCTGACCTGGCAGCGGGATGGGGAGGAACAGACCCAGGACACAGAGCTTGTGGAGACCAGGCCTGCAGGGGAT 807
Query 787 AGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAAGAGCAGAGATACACATGCCATGTACAGCA 860
.|||||||||||||||||||.|||||||||||||||.|||||||.||.||||||||||||||||||||.|||||
Sbjct 808 GGAACCTTCCAGAAGTGGGCCGCTGTGGTGGTGCCTCCTGGAGAGGAACAGAGATACACATGCCATGTGCAGCA 881
Query 861 TGAGGGGCTGCCGAAGCCCCTCACCCTGAGATGGGAGCCATCTTCCCAGTCCACCATCCCCATCGTGGGCATTG 934
.|||||||||||..|||||||||.||||||||||||||..|||.|||||.||||||||||||||||||||||.|
Sbjct 882 CGAGGGGCTGCCCCAGCCCCTCATCCTGAGATGGGAGCAGTCTCCCCAGCCCACCATCCCCATCGTGGGCATCG 955
Query 935 TTGCTGGCCTGGCTGTCCTAGCAGTTGTGGTCATCGGAGCTGTGGTCGCTACTGTGATGTGTAGGAGGAAGAGC 1008
||||||||||.|.||||||.|.||.||||||||..|||||||||||||||.||||||||||.||||.|||||||
Sbjct 956 TTGCTGGCCTTGTTGTCCTTGGAGCTGTGGTCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAGAAGAGC 1029
Query 1009 TCAGGTGGAAAAGGAGGGAGCTACTCTCAGGCTGC-------------GTCCAGCG--------------ACA- 1054
||||.|.||||..|||||||||||||||||||||| || ||||| |||
Sbjct 1030 TCAGATAGAAACAGAGGGAGCTACTCTCAGGCTGCAGCCTACTCAGTGGT-CAGCGGAAACTTGATGATAACAT 1102
Query 1055 -GTGCCCA------------------GGGCTCT------GAT-------GTGTCTC-----TCACAG---CT-- 1086
|||..|| |.||||| ||| .||.||| |||||| ||
Sbjct 1103 GGTGGTCAAGCTTATTTCTCCTGGGGGTGCTCTTCCAAGGATATTTGGGCTGCCTCCGGAGTCACAGTGTCTTG 1176
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 1177 GGCCGCCGGAAGGAAAGTTGACTCATACTGGTGTCCAGTGAAGAAACCCAGGCGCATAAGAGGGACAGTTGGAT 1250
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 1251 CTCAGGGAGGACTGTCTTCTTCTCACCTCCCCGGACGATGCTTCTTGACACAGGAAAGAGGATGTGCTGCTAGG 1324
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 1325 GTCATCATGTCCTGGTTTATTGTGTTGTCAGTAGAATGAAATCAAAATACATACTTCATAAATAATAAAATAAC 1398
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 1399 CCATAATAAGTAAACATTTACAATTTACTCACACCATTGAGGTTTCCTCCAGGTGTGAGCACAGCTGCAGACAC 1472
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 1473 ACCTTGTCGCTTCAGTCAGGACACAGGACAGAGTAAAATGGGAAGAAACCACAGTCACTGCAGAAAGGGCCCCC 1546
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 1547 ATGGAAGAGGCCTGGCAGGGAGGCCAGCTGCCCCAGGGCCACCATATTTAGAGATGACTTCCCCTTTCTAGGCA 1620
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 1621 GGACTGGGATTTTAAAATTCTTTTTGTATTCATAGTTGTTCTGAAATTGCAGGATGATGAGACCCAGCACTGGT 1694
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 1695 GAGTTATACTGTCTCTTTCTTCCCTATTAAATTCTGTGCCAAACAGCACCTTCATATATTTATCTCCTCTTCCT 1768
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 1769 GGAGAGAATAAAAACAATGGAAAAATTGAACCATACAAACATACTTTAAATATGTGCTGTCAGAAGTAGCTACT 1842
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 1843 AAAGGATTAATTCCACCAAAGTGAGGGAAGGTTTGAAAAGAAAAACATTGTATACCCATATTCAAAGCAGCATT 1916
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 1917 ATTCACGATAGCCAAGACAACACACACCAACACATGAATGAAGAAAATGTGGTATATATCGACAACGGAATATC 1990
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 1991 ATTCAGCCTTAAGAAGGAAACCTGGTCACAGGCTGCAACAGGGATAAACCTGAAGGACACTGCTAAGTAAAATA 2064
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 2065 AGCCAATCACAAAGAAAACCCAATACTGCACATTTCCATTTATATGAGGTGTCTAAACTGAAAGTAGACTAATG 2138
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 2139 GCTGCTAGGGGCTCGGTGAGGGGGATGGATGAATGTTTGTTCAATGGGCATAGAGTTTCAGTGTTGCAAGATGA 2212
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 2213 AAAGTTCTAGAGATCTGTTGCACAACTATGTATTTACAGTTAATACTGTACTACTGTATACTTTAAAATAGTTA 2286
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 2287 AGATACCAAATTTTACATAATGTAGTTTTTGGCCCAAGGAAAAGACTAATTAGCCCTGTTACTAATTTAGGGAA 2360
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 2361 AAAGTACATGAATTCATTAAAAATATATTAGTATGCGCTTACCTTAGATACAGAAAACTATGAGACAAAAAGAG 2434
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 2435 AGATCCCTGCTACCCCAGCTATCACCCATGAACCAGGAAAATCAGCACCTCCTGAAACTAGACAGAAAGGCTCA 2508
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 2509 CAGGCCCAGCCTTGACATGTTGAATCAGTCTGCATTTTGGCTGGAACCCAGGTGGCTCCACTGCATGTAAAGCA 2582
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 2583 CCTTCCCAGATAGTGATGGAGGGAGATCCTAGGACAGTGACTCTGCTCCACGGGGAGAAGCCTCCAGTCCAGAT 2656
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 2657 GGGAGCAGCCAGAAGGGCCCAGGAGGGACATTTCCAAGAAGATAAAATTAACAGAATGTCCAAAGTGTCCAACG 2730
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 2731 TCTTGAAAGAATCATACAAACAAAAGAGATATCAAACTTAAATTAATGAGAGTTAATAAAATAAACAAAAACAA 2804
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 2805 ATGCAAGTATTAACTCCAAGAAGAACCAATGTTGTACAGGCAGTGAAAAGTAGTCCAGTTGACATATGAGAGGA 2878
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 2879 TTAGTCATGGTAAAAGAAACAAGAGATGGCTGAACTAAACATAATCACTATATAAATATACTGGGAAGAGTGAA 2952
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 2953 AGAGAACAAGTACTCTTAACTGTTGCATCCACCATTGCGCTGTGCAACAATGGGTGCATCTGAAAAAAATCAAG 3026
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 3027 CAATAATAATAAAGAAATGGTAGTTAGAGATACAGAAGTAAAGTCAAAAGAATCAGCTAAAAAACTTGAAAGTG 3100
Query 1087 -------------------------------------------------------------------------- 1086
Sbjct 3101 GTTGGCCCCTAGAAAGGCAGAAATTGAGAAGAGGCAGAGAGGACTCTCATTTTTCTCAAGAGATTCTGCACAAA 3174
Query 1087 ------------------------------------------------------------- 1086
Sbjct 3175 TATTTGACTCTTTCAATTGTGCACAATTATAAATTTGATTAAAATAAAAACAAAAGCTTCA 3235
