Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_10887
- Subject:
- XR_868870.2
- Aligned Length:
- 2965
- Identities:
- 659
- Gaps:
- 2249
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CAGTTGCGCAAGTGATGTAAAGCAGTCCCGCTGTACCTAAAGGGGGAGTGTCACGTACTTGGCGTAAGGAGAGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTAGGCCCTTCCCGCCATTGGCGGCGGTTAGGGCGTTTACGTAACGGCGTGACGTAAGCGGAGACGCGTTAGTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGGGGAAGGTTCTAGAAAAGCGGCGGTCTCGGCTCCAGCGGCAGTAGCAGCGGCGCCGGTCCCGTGTGCAGGAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTCCTTTGCGGCCCAGTTTCTTGGCCATCGCCTGCTCTCCCCACAGCGCCAGGACGAGTCCCGTGCGCGTCCGT 296
Query 1 ---------------------------------------------------------------ATGGAGAGAGA 11
|||||||||||
Sbjct 297 CCGCGGAGGTCTTTCTCATCTCGCTCGGCTGCGGGAAATCGGGCTGAAGCGACTGAGTCCGCGATGGAGAGAGA 370
Query 12 AAAGGAACAGTTCCGTAAGCTCTTTATTGGTGGCTTAAGCTTTGAAACCACAGAAGAAAGTTTGAGGAACTACT 85
|||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 371 AAAGGAACAGTTCCGAAAGCTCTTTATTGGTGGCTTAAGCTTTGAAACCACAGAAGAAAGTTTGAGAAACTACT 444
Query 86 ACGAACAATGGGGAAAGCTTACAGACTGTGTGGTAATGAGGGATCCTGCAAGCAAAAGATCAAGAGGATTTGGT 159
|.||.||||||||||||||.||||||||||||||.|||.||||||||||||||||||||||||||||||||||.
Sbjct 445 ATGAGCAATGGGGAAAGCTCACAGACTGTGTGGTTATGCGGGATCCTGCAAGCAAAAGATCAAGAGGATTTGGC 518
Query 160 TTTGTAACTTTTTCATCCATGGCTGAGGTTGATGCTGCCATGGCTGCAAGACCTCATTCAATTGATGGGAGAGT 233
|||||||||||.|||||||||||.||||||||.|||||||||||||||||.||.|||||.||||||||.||.||
Sbjct 519 TTTGTAACTTTCTCATCCATGGCCGAGGTTGACGCTGCCATGGCTGCAAGGCCCCATTCCATTGATGGCAGGGT 592
Query 234 AGTTGAGCCAAAACGTGCTGTAGCAAGAGAGGAATCTGGAAAACCAGGGGCTCATGTAACTGTGAAGAAGCTGT 307
|||||||||||||||||||||||||||||||||.||||||||||||||.||.|||||.||||||||||||||||
Sbjct 593 AGTTGAGCCAAAACGTGCTGTAGCAAGAGAGGAGTCTGGAAAACCAGGAGCCCATGTGACTGTGAAGAAGCTGT 666
Query 308 TTGTTGGCGGAATTAAAGAAGATACTGAGGAACATCACCTTAGAGATTACTTTGAGGAATATGGAAAAATTGAT 381
|||||||.||||||||.|||||||||||||||||.||||||||||||||||||||.||.|||||||||||||||
Sbjct 667 TTGTTGGTGGAATTAAGGAAGATACTGAGGAACACCACCTTAGAGATTACTTTGAAGAGTATGGAAAAATTGAT 740
Query 382 ACCATTGAGATAATTACTGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGCTTTGTTACTTTTGATGACCATGA 455
||.|||||.||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACTATTGAAATAATTACCGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGCTTTGTTACTTTTGATGACCATGA 814
Query 456 TCCTGTGGATAAAATCGTATTGCAGAAATACCATACCATCAATGGTCATAATGCAGAAGTAAGAAAGGCTTTGT 529
|||||||||||||||.||.|||||.|||||.||.|||||.||||||||.|||||||||||.||||||||.||||
Sbjct 815 TCCTGTGGATAAAATTGTCTTGCAAAAATATCACACCATAAATGGTCACAATGCAGAAGTTAGAAAGGCATTGT 888
Query 530 CTAGACAAGAAATGCAGGAGGACC-------------------------------------------------- 553
|||||||||||||||||||.|.||
Sbjct 889 CTAGACAAGAAATGCAGGAAGTCCAAAGTTCTAGGAGTGGAAGAGGAGGAAACTTTGGTTTTGGGGATTCTCGT 962
Query 554 --TGGAGGTGGCAATTTTGGAGGTAGCCCCGGTTATGGAGGAGGA---------AGAGGAGGATATGGTGG--- 613
|||.||||||||||||||| || .|||..|||| ||.||.||||.||.|||
Sbjct 963 GGTGGCGGTGGCAATTTTGGA-----CC-------AGGACCAGGAAGCAACTTTAGGGGGGGATCTGATGGATA 1024
Query 614 TGGA---GGACCTGGATATGGCAACCAGGGTGG-------GGGCTACGGAGGTGGTTATGACAACTATGGAGGA 677
.||| ||||.|||||.||| ||.||| ||| ||.|||||.|| |.|| |||
Sbjct 1025 CGGAAGTGGACGTGGATTTGG------GGATGGCTATAATGGG-TATGGAGGAGG-------ACCT-----GGA 1079
Query 678 GGAAATTATGGAAGTGGAAATTACAATGATTTTGGAAATTATAACCAGCAACCTTCTAACTACGGTCCAA---- 747
|||||||||||||||||||.||||||||||||||||||||||||||||||.|||||||||||.|||||||
Sbjct 1080 GGAAATTATGGAAGTGGAAGTTACAATGATTTTGGAAATTATAACCAGCAGCCTTCTAACTATGGTCCAATGAA 1153
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1154 GAGTGGAAACTTTGGGGGTAGCAGGAACATGGGAGGACCATATGGTGGAGGGAACTATGGTCCTGGAGGAAGTG 1227
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1228 GAGGAAGTGGTGGCTATGGTGGAAGGAGCAGATATTAAGCTTCTTCCTACTTACCATGGGCTTCACTGTATAAA 1301
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1302 TAGGAGAGGATGAGAGCCCAGAGGTAACAGAACAGCTTCAGGTTATGGAAATAACAATGTTAAGGAAACTCTTA 1375
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1376 TCTCAGTCATGCATAAATATGCAGTGGTATGGCAGAAGACACCAGAGCAGATGCAGACAGCCATTTTGTGAATG 1449
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1450 GATTGGATTATTTAATAACATTACCTTACTGTGGAGGAAGGATTGTAAAAAAAAATGCCTTTGAGACAGTTTCT 1523
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1524 TAGCTTTTTAATTGTTGTTTCTTTCTAGTGGTCTTTGTAAGAGTGTAGAAGCATTCCTTCTTTGATAATGTTAA 1597
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1598 ATTTGTAAGTTTCAGGTGACATGTGAAACCTTTTTTAAGATTTTTCTCAAAAGTTTTGAAAAGCTATTAGCCAG 1671
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1672 GATCATGGTGTAATAAGACATAACGTTTTTCCTTTAAAAATTTTAAGTGCGTGTGTAGAGTTAAGAAGCTGTTG 1745
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1746 TACATTTATGATTTAATAAAATAATTCTAAAGGAAATTGTGTAATTATAGACTTTTTATTTTAAATAAGTTAAG 1819
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1820 GAGTGGGTAGTATAATTAAGGTCCATTGCAAAGCTGTTGTTGTATTTGTGTAAGATAAAAATGCTGGTCAGATT 1893
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1894 TAAGTGTGTTGTCTGAAATTCATCAGGAATAAATTACCTAGTTAACTTAAGGGATATCTCTGCAAAGAGAAACA 1967
Query 748 -------------------------------------------------------------------------- 747
Sbjct 1968 CCTTTTTAGATCTTTTAGATGCTGCTTCTTCAATGCAAGGAAAGGAAATAACCCCAGCGAGGTACTCTTCAGGG 2041
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2042 ACACAGGTCTAGTACAAGAGAACTCTTGACGACTAATCGCAGCCAGTCTTAAAAAACTGTGCTGTATCTACAAA 2115
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2116 GCTTTAACTACAGTAGTTGATAAGGATGCCAACGAAAGCTGAGGGTGTAGAGCAAAGTAGTTCTAAGCTTCAGT 2189
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2190 TAAACTTCTTTAGGTAAGAACTTATTTACTTTTTCTTTCTTAATTTTCCTCCCTTAAAAGATAAACTAATAAAC 2263
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2264 TCTTCAATGGTCTTTTCAGTATAGTTCTTATGTAGTTTAACATAGCTTATAAATTGAGTTTAACAATAAACTCA 2337
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2338 AGATAATTTTATAAACCCTGTTTTCCAATCTGTCATTTACTTAAATTATTTTGGTTGTTTTCCCTTTTTTTCCT 2411
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2412 TCTTTCTCACCCCCTCCCTTTCCATGAAGATTCAGGTGCTTAACATATCATTTTTTTCCCTGCTGGAATTTTAG 2485
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2486 CATTGATATGAACCATGGACAAGTATATTCTGCTGCCACAAAGACTGTAAAGTGCTTCATTTCAACAGCTGAGG 2559
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2560 CAAGCCAAGTGATCATTAATAAAGCTTTTCTTGCTTCCTTCAGTGGTGTTGGTAGTAAAATGGAAGGTGTCTTG 2633
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2634 CTGCAGGTAACTAATGAAGAAGTGGTCAACCACAGAGTCTTCAAGAAATAAGAAATTCTGTACCATCTGAAAGT 2707
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2708 AGTTCTTGTTGGTGCCTTCATTTAAGAAGCACTTTTAAGAAAAGGGAATGTTTTCTGATTTAAAACTTCATTTA 2781
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2782 GTACAGGTTCTTAATAAAATTACAAAAATGCTGATTGTAAAGGGTAACATCAAATTAGCAAAGGATAATGTATT 2855
Query 748 -------------------------------------------------------------------------- 747
Sbjct 2856 GTTTTAGGATTTGTGAGTAGACAGATAAGAGCTCTATTTTAAATACAAGTTTTATAAAATAAATACTTTTGTAT 2929
Query 748 ----- 747
Sbjct 2930 CCAAA 2934
