Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11038
Subject:
NM_001128143.2
Aligned Length:
2682
Identities:
478
Gaps:
2187

Alignment

Query    1  ATGAAACAATTGCCTGCGGCAACAGTTCGACTCCTTTCAAGTTCTCAGATCATCACTTCGGTGGTCAGTGTTGT  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGAAACAATTGCCTGCGGCAACAGTTCGACTCCTTTCAAGTTCTCAGATCATCACTTCGGTGGTCAGTGTTGT  74

Query   75  AAAAGAGCTTATTGAAAACTCCTTGGATGCTGGTGCCACAAGCGTAGATGTTAAACTGGAGAACTATGGATTTG  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  AAAAGAGCTTATTGAAAACTCCTTGGATGCTGGTGCCACAAGCGTAGATGTTAAACTGGAGAACTATGGATTTG  148

Query  149  ATAAAATTGAGGTGCGAGATAACGGGGAGGGTATCAAGGCTGTTGATGCACCTGTAATGGCAATGAAGTACTAC  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ATAAAATTGAGGTGCGAGATAACGGGGAGGGTATCAAGGCTGTTGATGCACCTGTAATGGCAATGAAGTACTAC  222

Query  223  ACCTCAAAAATAAATAGTCATGAAGATCTTGAAAATTTGACAACTTACGGTTTTCGTGGAGAAGCCTTGGGGTC  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  ACCTCAAAAATAAATAGTCATGAAGATCTTGAAAATTTGACAACTTACGGTTTTCGTGGAGAAGCCTTGGGGTC  296

Query  297  AATTTGTTGTATAGCTGAGGTTTTAATTACAACAAGAACGGCTGCTGATAATTTTAGCACCCAGTATGTTTTAG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AATTTGTTGTATAGCTGAGGTTTTAATTACAACAAGAACGGCTGCTGATAATTTTAGCACCCAGTATGTTTTAG  370

Query  371  ATGGCAGTGGCCACATACTTTCTCAGAAACCTTCACATCTTGGTCAAG--------------------------  418
            ||||||||||||||||||||||||||||||||||||||||||||||||                          
Sbjct  371  ATGGCAGTGGCCACATACTTTCTCAGAAACCTTCACATCTTGGTCAAGGTACAACTGTAACTGCTTTAAGATTA  444

Query  419  ---------------GTAAGAAAGTAGCTT------------------TGTA----------TACAAACAT---  446
                           |||||||||.||.||                  ||||          .|.|||.||   
Sbjct  445  TTTAAGAATCTACCTGTAAGAAAGCAGTTTTACTCAACTGCAAAAAAATGTAAAGATGAAATAAAAAAGATCCA  518

Query  447  --------TCTTTACCTTT------------TCTGTCTTA---ATTG--TTGGTTTAAAAAAAAAAAAGTTA-C  494
                    ||.|.|.||||            .|||.||||   ||||  ||.||   |.|.||.||.|.||| |
Sbjct  519  AGATCTCCTCATGAGCTTTGGTATCCTTAAACCTGACTTAAGGATTGTCTTTGT---ACATAACAAGATTTATC  589

Query  495  TCGG----------------------------------------------------------------------  498
            ||.|                                                                      
Sbjct  590  TCAGTGGATTTCTTCCAAAGTGTGATGCAGACCACTCTTTCACTAGTCTTTCAACACCAGAAAGAAGTTTCATC  663

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct  664  TTCATAAACAGTCGACCAGTACATCAAAAAGATATCTTAAAGTTAATCCGACATCATTACAATCTGAAATGCCT  737

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct  738  AAAGGAATCTACTCGTTTGTATCCTGTTTTCTTTCTGAAAATCGATGTTCCTACAGCTGATGTTGATGTAAATT  811

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct  812  TAACACCAGATAAAAGCCAAGTATTATTACAAAATAAGGAATCTGTTTTAATTGCTCTTGAAAATCTGATGACG  885

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct  886  ACTTGTTATGGACCATTACCTAGTACAAATTCTTATGAAAATAATAAAACAGATGTTTCCGCAGCTGACATCGT  959

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct  960  TCTTAGTAAAACAGCAGAAACAGATGTGCTTTTTAATAAAGTGGAATCATCTGGAAAGAATTATTCAAATGTTG  1033

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 1034  ATACTTCAGTCATTCCATTCCAAAATGATATGCATAATGATGAATCTGGAAAAAACACTGATGATTGTTTAAAT  1107

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 1108  CACCAGATAAGTATTGGTGACTTTGGTTATGGTCATTGTAGTAGTGAAATTTCTAACATTGATAAAAACACTAA  1181

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 1182  GAATGCATTTCAGGACATTTCAATGAGTAATGTATCATGGGAGAACTCTCAGACGGAATATAGTAAAACTTGTT  1255

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 1256  TTATAAGTTCCGTTAAGCACACCCAGTCAGAAAATGGCAATAAAGACCATATAGATGAGAGTGGGGAAAATGAG  1329

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 1330  GAAGAAGCAGGTCTTGAAAACTCTTCGGAAATTTCTGCAGATGAGTGGAGCAGGGGAAATATACTTAAAAATTC  1403

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 1404  AGTGGGAGAGAATATTGAACCTGTGAAAATTTTAGTGCCTGAAAAAAGTTTACCATGTAAAGTAAGTAATAATA  1477

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 1478  ATTATCCAATCCCTGAACAAATGAATCTTAATGAAGATTCATGTAACAAAAAATCAAATGTAATAGATAATAAA  1551

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 1552  TCTGGAAAAGTTACAGCTTATGATTTACTTAGCAATCGAGTAATCAAGAAACCCATGTCAGCAAGTGCTCTTTT  1625

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 1626  TGTTCAAGATCATCGTCCTCAGTTTCTCATAGAAAATCCTAAGACTAGTTTAGAGGATGCAACACTACAAATTG  1699

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 1700  AAGAACTGTGGAAGACATTGAGTGAAGAGGAAAAACTGAAATATGAAGAGAAGGCTACTAAAGACTTGGAACGA  1773

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 1774  TACAATAGTCAAATGAAGAGAGCCATTGAACAGGAGTCACAAATGTCACTAAAAGATGGCAGAAAAAAGATAAA  1847

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 1848  ACCCACCAGCGCATGGAATTTGGCCCAGAAGCACAAGTTAAAAACCTCATTATCTAATCAACCAAAACTTGATG  1921

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 1922  AACTCCTTCAGTCCCAAATTGAAAAAAGAAGGAGTCAAAATATTAAAATGGTACAGATCCCCTTTTCTATGAAA  1995

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 1996  AACTTAAAAATAAATTTTAAGAAACAAAACAAAGTTGACTTAGAAGAGAAGGATGAACCTTGCTTGATCCACAA  2069

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 2070  TCTCAGGTTTCCTGATGCATGGCTAATGACATCCAAAACAGAGGTAATGTTATTAAATCCATATAGAGTAGAAG  2143

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 2144  AAGCCCTGCTATTTAAAAGACTTCTTGAGAATCATAAACTTCCTGCAGAGCCACTGGAAAAGCCAATTATGTTA  2217

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 2218  ACAGAGAGTCTTTTTAATGGATCTCATTATTTAGACGTTTTATATAAAATGACAGCAGATGACCAAAGATACAG  2291

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 2292  TGGATCAACTTACCTGTCTGATCCTCGTCTTACAGCGAATGGTTTCAAGATAAAATTGATACCAGGAGTTTCAA  2365

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 2366  TTACTGAAAATTACTTGGAAATAGAAGGAATGGCTAATTGTCTCCCATTCTATGGAGTAGCAGATTTAAAAGAA  2439

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 2440  ATTCTTAATGCTATATTAAACAGAAATGCAAAGGAAGTTTATGAATGTAGACCTCGCAAAGTGATAAGTTATTT  2513

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 2514  AGAGGGAGAAGCAGTGCGTCTATCCAGACAATTACCCATGTACTTATCAAAAGAGGACATCCAAGACATTATCT  2587

Query  499  --------------------------------------------------------------------------  498
                                                                                      
Sbjct 2588  ACAGAATGAAGCACCAGTTTGGAAATGAAATTAAAGAGTGTGTTCATGGTCGCCCATTTTTTCATCATTTAACC  2661

Query  499  ------------------  498
                              
Sbjct 2662  TATCTTCCAGAAACTACA  2679

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