Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11038
- Subject:
- XR_001738779.1
- Aligned Length:
- 3223
- Identities:
- 478
- Gaps:
- 2727
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGCGTGCTGGGTGCGGGTGCGGGTGCGGGGTTGGGCCTGCGCATCGGGTGAGACGCTGGCTGCTTGCGGCTAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGGATGGTAATTGCCTGCCTCGCGCTAGCAGGAAGGCACACCTGTTGTCCTTAACTGACTTTCCGGGTCATCAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CACTTCTTCAGAAGTGTTCCTTTTCCCTCCCAGCAAATATGGAAGACTGACTATCCTGATATTCCCAGACATTC 222
Query 1 ---------------------------------ATGAAACAATTGCCTGCGGCAACAGTTCGACTCCTTTCAAG 41
|||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TTTGCTGTGATTTCTGCTCTGTTAAAAGCGAAAATGAAACAATTGCCTGCGGCAACAGTTCGACTCCTTTCAAG 296
Query 42 TTCTCAGATCATCACTTCGGTGGTCAGTGTTGTAAAAGAGCTTATTGAAAACTCCTTGGATGCTGGTGCCACAA 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTCTCAGATCATCACTTCGGTGGTCAGTGTTGTAAAAGAGCTTATTGAAAACTCCTTGGATGCTGGTGCCACAA 370
Query 116 GCGTAGATGTTAAACTGGAGAACTATGGATTTGATAAAATTGAGGTGCGAGATAACGGGGAGGGTATCAAGGCT 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GCGTAGATGTTAAACTGGAGAACTATGGATTTGATAAAATTGAGGTGCGAGATAACGGGGAGGGTATCAAGGCT 444
Query 190 GTTGATGCACCTGTAATGGCAATGAAGTACTACACCTCAAAAATAAATAGTCATGAAGATCTTGAAAATTTGAC 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTTGATGCACCTGTAATGGCAATGAAGTACTACACCTCAAAAATAAATAGTCATGAAGATCTTGAAAATTTGAC 518
Query 264 AACTTACGGTTTTCGTGGAGAAGCCTTGGGGTCAATTTGTTGTATAGCTGAGGTTTTAATTACAACAAGAACGG 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AACTTACGGTTTTCGTGGAGAAGCCTTGGGGTCAATTTGTTGTATAGCTGAGGTTTTAATTACAACAAGAACGG 592
Query 338 CTGCTGATAATTTTAGCACCCAGTATGTTTTAGATGGCAGTGGCCACATACTTTCTCAGAAACCTTCACATCTT 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTGCTGATAATTTTAGCACCCAGTATGTTTTAGATGGCAGTGGCCACATACTTTCTCAGAAACCTTCACATCTT 666
Query 412 GGTCAAG-----------------------------------------GTAAGAAAGTAGCTT----------- 433
||||||| |||||||||.||.||
Sbjct 667 GGTCAAGGTACAACTGTAACTGCTTTAAGATTATTTAAGAATCTACCTGTAAGAAAGCAGTTTTACTCAACTGC 740
Query 434 -------TGTA----------TACAAACAT-----------TCTTTACCTTT------------TCTGTCTTA- 466
|||| .|.|||.|| ||.|.|.|||| .|||.||||
Sbjct 741 AAAAAAATGTAAAGATGAAATAAAAAAGATCCAAGATCTCCTCATGAGCTTTGGTATCCTTAAACCTGACTTAA 814
Query 467 --ATTGTTGGTTTAAAAAAAAAAA---AGTTACTCGG------------------------------------- 498
||||| .|||..|.|.||.|| |||||.|.||
Sbjct 815 GGATTGT--CTTTGTACATAACAAGGCAGTTATTTGGCAGAAAAGCAGAGTATCAGATCACAAGATGGCTCTCA 886
Query 499 -------------------------------------------------------------------------- 498
Sbjct 887 TGTCAGTTCTGGGGACTGCTGTTATGAACAATATGGAATCCTTTCAGTACCACTCTGAAGAATCTCAGATTTAT 960
Query 499 -------------------------------------------------------------------------- 498
Sbjct 961 CTCAGTGGATTTCTTCCAAAGTGTGATGCAGACCACTCTTTCACTAGTCTTTCAACACCAGAAAGAAGTTTCAT 1034
Query 499 -------------------------------------------------------------------------- 498
Sbjct 1035 CTTCATAAACAGTCGACCAGTACATCAAAAAGATATCTTAAAGTTAATCCGACATCATTACAATCTGAAATGCC 1108
Query 499 -------------------------------------------------------------------------- 498
Sbjct 1109 TAAAGGAATCTACTCGTTTGTATCCTGTTTTCTTTCTGAAAATCGATGTTCCTACAGCTGATGTTGATGTAAAT 1182
Query 499 -------------------------------------------------------------------------- 498
Sbjct 1183 TTAACACCAGATAAAAGCCAAGTATTATTACAAAATAAGGAATCTGTTTTAATTGCTCTTGAAAATCTGATGAC 1256
Query 499 -------------------------------------------------------------------------- 498
Sbjct 1257 GACTTGTTATGGACCATTACCTAGTACAAATTCTTATGAAAATAATAAAACAGATGTTTCCGCAGCTGACATCG 1330
Query 499 -------------------------------------------------------------------------- 498
Sbjct 1331 TTCTTAGTAAAACAGCAGAAACAGATGTGCTTTTTAATAAAGTGGAATCATCTGGAAAGAATTATTCAAATGTT 1404
Query 499 -------------------------------------------------------------------------- 498
Sbjct 1405 GATACTTCAGTCATTCCATTCCAAAATGATATGCATAATGATGAATCTGGAAAAAACACTGATGATTGTTTAAA 1478
Query 499 -------------------------------------------------------------------------- 498
Sbjct 1479 TCACCAGATAAGTATTGGTGACTTTGGTTATGGTCATTGTAGTAGTGAAATTTCTAACATTGATAAAAACACTA 1552
Query 499 -------------------------------------------------------------------------- 498
Sbjct 1553 AGAATGCATTTCAGGACATTTCAATGAGTAATGTATCATGGGAGAACTCTCAGACGGAATATAGTAAAACTTGT 1626
Query 499 -------------------------------------------------------------------------- 498
Sbjct 1627 TTTATAAGTTCCGTTAAGCACACCCAGTCAGAAAATGGCAATAAAGACCATATAGATGAGAGTGGGGAAAATGA 1700
Query 499 -------------------------------------------------------------------------- 498
Sbjct 1701 GGAAGAAGCAGGTCTTGAAAACTCTTCGGAAATTTCTGCAGATGAGTGGAGCAGGGGAAATATACTTAAAAATT 1774
Query 499 -------------------------------------------------------------------------- 498
Sbjct 1775 CAGTGGGAGAGAATATTGAACCTGTGAAAATTTTAGTGCCTGAAAAAAGTTTACCATGTAAAGTAAGTAATAAT 1848
Query 499 -------------------------------------------------------------------------- 498
Sbjct 1849 AATTATCCAATCCCTGAACAAATGAATCTTAATGAAGATTCATGTAACAAAAAATCAAATGTAATAGATAATAA 1922
Query 499 -------------------------------------------------------------------------- 498
Sbjct 1923 ATCTGGAAAAGTTACAGCTTATGATTTACTTAGCAATCGAGTAATCAAGAAACCCATGTCAGCAAGTGCTCTTT 1996
Query 499 -------------------------------------------------------------------------- 498
Sbjct 1997 TTGTTCAAGATCATCGTCCTCAGTTTCTCATAGAAAATCCTAAGACTAGTTTAGAGGATGCAACACTACAAATT 2070
Query 499 -------------------------------------------------------------------------- 498
Sbjct 2071 GAAGAACTGTGGAAGACATTGAGTGAAGAGGAAAAACTGAAATATGAAGAGAAGGCTACTAAAGACTTGGAACG 2144
Query 499 -------------------------------------------------------------------------- 498
Sbjct 2145 ATACAATAGTCAAATGAAGAGAGCCATTGAACAGGAGTCACAAATGTCACTAAAAGATGGCAGAAAAAAGATAA 2218
Query 499 -------------------------------------------------------------------------- 498
Sbjct 2219 AACCCACCAGCGCATGGAATTTGGCCCAGAAGCACAAGTTAAAAACCTCATTATCTAATCAACCAAAACTTGAT 2292
Query 499 -------------------------------------------------------------------------- 498
Sbjct 2293 GAACTCCTTCAGTCCCAAATTGAAAAAAGAAGGAGTCAAAATATTAAAATGGTACAGATCCCCTTTTCTATGAA 2366
Query 499 -------------------------------------------------------------------------- 498
Sbjct 2367 AAACTTAAAAATAAATTTTAAGAAACAAAACAAAGTTGACTTAGAAGAGAAGGATGAACCTTGCTTGATCCACA 2440
Query 499 -------------------------------------------------------------------------- 498
Sbjct 2441 ATCTCAGGTTTCCTGATGCATGGCTAATGACATCCAAAACAGAGGTAATGTTATTAAATCCATATAGAGTAGAA 2514
Query 499 -------------------------------------------------------------------------- 498
Sbjct 2515 GAAGCCCTGCTATTTAAAAGACTTCTTGAGAATCATAAACTTCCTGCAGAGCCACTGGAAAAGCCAATTATGTT 2588
Query 499 -------------------------------------------------------------------------- 498
Sbjct 2589 AACAGAGAGACGTTTTATATAAAATGACAGCAGATGACCAAAGATACAGTGGATCAACTTACCTGTCTGATCCT 2662
Query 499 -------------------------------------------------------------------------- 498
Sbjct 2663 CGTCTTACAGCGAATGGTTTCAAGATAAAATTGATACCAGGAGTTTCAATTACTGAAAATTACTTGGAAATAGA 2736
Query 499 -------------------------------------------------------------------------- 498
Sbjct 2737 AGGAATGGCTAATTGTCTCCCATTCTATGGAGTAGCAGATTTAAAAGAAATTCTTAATGCTATATTAAACAGAA 2810
Query 499 -------------------------------------------------------------------------- 498
Sbjct 2811 ATGCAAAGGAAGTTTATGAATGTAGACCTCGCAAAGTGATAAGTTATTTAGAGGGAGAAGCAGTGCGTCTATCC 2884
Query 499 -------------------------------------------------------------------------- 498
Sbjct 2885 AGACAATTACCCATGTACTTATCAAAAGAGGACATCCAAGACATTATCTACAGAATGAAGCACCAGTTTGGAAA 2958
Query 499 -------------------------------------------------------------------------- 498
Sbjct 2959 TGAAATTAAAGAGTGTGTTCATGGTCGCCCATTTTTTCATCATTTAACCTATCTTCCAGAAACTACATGATTAA 3032
Query 499 -------------------------------------------------------------------------- 498
Sbjct 3033 ATATGTTTAAGAAGATTAGTTACCATTGAAATTGGTTCTGTCATAAAACAGCATGAGTCTGGTTTTAAATTATC 3106
Query 499 -------------------------------------------------------------------------- 498
Sbjct 3107 TTTGTATTATGTGTCACATGGTTATTTTTTAAATGAGGATTCACTGACTTGTTTTTATATTGAAAAAAGTTCCA 3180
Query 499 ----------------------------------------- 498
Sbjct 3181 CGTATTGTAGAAAACGTAAATAAACTAATATAGACTATTCA 3221
