Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11078
- Subject:
- XM_017317348.1
- Aligned Length:
- 4494
- Identities:
- 2397
- Gaps:
- 1761
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAGGACACTTGGGACTTGCCTGGTGACTTTAGCTGGACTTTTGCTAACTGCGGCCGGAGAAACATTTTCAGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGGCTGCCTCTTTGATGAACCATACAGCACATGTGGATATAGTCAAGCTGACGAAGATGACTTCAACTGGGAGC 148
Query 1 --------------------------------------ATGCCATCAGGTTCTTTCATGCTGGTGAATGCCTCT 36
|||||||||||.||.|||||||||||.||..|.|||
Sbjct 149 AGGTGAACACCCTGACCAAACCGACCTCTGACCCCTGGATGCCATCAGGCTCCTTCATGCTGGTCAACACTTCT 222
Query 37 GGGAGACCTGAGGGGCAGAGAGCCCACCTGCTCTTACCCCAACTTAAAGAAAATGACACCCACTGCATCGATTT 110
||||.|||.||.||.||||||||.|||||||||.|.||.||.|||||.|||||||||||||||||||||||.||
Sbjct 223 GGGAAACCAGAAGGCCAGAGAGCTCACCTGCTCCTGCCTCAGCTTAAGGAAAATGACACCCACTGCATCGACTT 296
Query 111 TCACTATTTTGTGTCCAGCAAGAGTAATTCTCCTCCGGGGTTACTCAATGTCTACGTGAAGGTCAATAACGGGC 184
||||||.|||||.||||||||||||||..||.||||.|||||.|||||||||||.||||||||.|||||.||.|
Sbjct 297 TCACTACTTTGTATCCAGCAAGAGTAACGCTGCTCCTGGGTTGCTCAATGTCTATGTGAAGGTGAATAATGGAC 370
Query 185 CACTGGGGAATCCTATCTGGAATATATCTGGAGACCCAGCACGTACATGGAACAGGGCAGAACTGGCCATTAGT 258
|||||||||||||.||||||||.|||||.||||||||..|.||.||.|||.||||||||||.||||||||.||.
Sbjct 371 CACTGGGGAATCCCATCTGGAACATATCCGGAGACCCCACCCGCACGTGGCACAGGGCAGAGCTGGCCATCAGC 444
Query 259 ACTTTCTGGCCTAACTTTTATCAGGTGATTTTTGAAGTGATAACTTCTGGACATCAAGGCTATCTCGCTATCGA 332
||.||||||||.||||||||.||||||||||||||||||.|.||.|||||.|||||||||||.||.||||||||
Sbjct 445 ACGTTCTGGCCCAACTTTTACCAGGTGATTTTTGAAGTGGTGACCTCTGGCCATCAAGGCTACCTTGCTATCGA 518
Query 333 TGAGGTGAAGGTGTTAGGACATCCATGTACCAGGACTCCTCACTTCCTGCGGATTCAGAATGTGGAAGTTAATG 406
|||.||.|||||.||||||||.||.||.||.||.|||||.||||||||||||||||||||.|||||.||.||||
Sbjct 519 TGAAGTTAAGGTCTTAGGACACCCGTGCACAAGAACTCCCCACTTCCTGCGGATTCAGAACGTGGAGGTGAATG 592
Query 407 CTGGCCAGTTTGCTACCTTCCAGTGCAGTGCCATCGGCAGGACCGTGGCAGGAGACAGGCTCTGGTTACAGGGC 480
|.||||||||||||||||||||||||||.|||||.||||||||.|||||.||.|||.||||||||.|.|||||.
Sbjct 593 CCGGCCAGTTTGCTACCTTCCAGTGCAGCGCCATAGGCAGGACAGTGGCTGGGGACCGGCTCTGGCTGCAGGGA 666
Query 481 ATTGATGTGCGAGATGCTCCTCTGAAGGAAATCAAGGTGACCAGCTCCCGACGCTTCATTGCTTCATTTAATGT 554
||||||||.||||||||.|||||||||||.||.||||||||.||.|||.||.|.|||||.||.||||||||.||
Sbjct 667 ATTGATGTCCGAGATGCCCCTCTGAAGGAGATAAAGGTGACTAGTTCCAGAAGATTCATAGCCTCATTTAACGT 740
Query 555 TGTGAATACCACCAAACGAGATGCTGGAAAGTACCGCTGCATGATTCGCACTGAAGGAGGTGTTGGAATATCAA 628
|||.||.||.|||||..||||.|||||.||||||||||||||||||.||||.|||||||||||.||.|||||||
Sbjct 741 TGTAAACACGACCAAGAGAGACGCTGGGAAGTACCGCTGCATGATTTGCACGGAAGGAGGTGTCGGGATATCAA 814
Query 629 ACTATGCAGAGTTGGTAGTTAAAGAACCACCCGTTCCTATTGCCCCACCTCAGCTCGCCTCTGTAGGAGCCACC 702
||||.|||||.||||||||||||||.|||||.|||||.||.|||||||||||||||||||||||.|||||.|||
Sbjct 815 ACTACGCAGAATTGGTAGTTAAAGAGCCACCTGTTCCCATCGCCCCACCTCAGCTCGCCTCTGTCGGAGCAACC 888
Query 703 TACCTGTGGATACAGCTCAACGCCAACTCCATCAATGGGGATGGGCCCATTGTGGCCCGAGAGGTGGAGTACTG 776
||.|||||||||||||||||.||||||||||||||||||||.||.||||||||||||||.|||||.||||||||
Sbjct 889 TATCTGTGGATACAGCTCAATGCCAACTCCATCAATGGGGACGGACCCATTGTGGCCCGCGAGGTTGAGTACTG 962
Query 777 CACGGCCAGTGGGAGCTGGAATGACCGGCAGCCAGTCGATTCCACGAGCTATAAAATTGGACACCTTGACCCAG 850
|||.|||||.||||||||||||||.|||||||||||.|||||||||||.||.||.|||||.|||||||||||||
Sbjct 963 CACAGCCAGCGGGAGCTGGAATGATCGGCAGCCAGTGGATTCCACGAGTTACAAGATTGGGCACCTTGACCCAG 1036
Query 851 ATACAGAATATGAGATTAGTGTGCTCCTGACCAGGCCAGGGGAGGGTGGCACTGGCTCTCCTGGTCCGGCTCTC 924
|.|||||.||||||||.||||||||.||.|||||.|||||.||.||.||||||||.|||||.||.||.|||||.
Sbjct 1037 ACACAGAGTATGAGATCAGTGTGCTTCTTACCAGACCAGGAGAAGGCGGCACTGGGTCTCCCGGGCCAGCTCTG 1110
Query 925 AGGACAAGAACAAAGTGTGCTGATCCCATGCGAGGCCCAAGAAAACTAGAAGTAGTGGAGGTCAAATCTCGGCA 998
||.|||||.|||||||||||.|||||||||||.|||||.||||||||||||||.|||||||||||||||||.||
Sbjct 1111 AGAACAAGGACAAAGTGTGCCGATCCCATGCGTGGCCCGAGAAAACTAGAAGTTGTGGAGGTCAAATCTCGACA 1184
Query 999 AATCACTATCAGCTGGGAGCCATTTGGATATAATGTAACTCGTTGCCACAGTTATAATCTCACTGTCCACTACT 1072
||||||.|||.||||||||||.||||||||.||||||||||||||||||||||||||||||||.||.|||||..
Sbjct 1185 AATCACCATCCGCTGGGAGCCGTTTGGATACAATGTAACTCGTTGCCACAGTTATAATCTCACAGTGCACTATG 1258
Query 1073 GTTACCAAGTTGGAGGACAAGAACAAGTGCGAGAAGAAGTAAGCTGGGATACAGAAAACTCACACCCTCAACAC 1146
|||||||.||.|||||.||.||.||.||||||||||||||.||||||||||||||.|||||.||||||||.|||
Sbjct 1259 GTTACCAGGTCGGAGGGCAGGAGCAGGTGCGAGAAGAAGTGAGCTGGGATACAGATAACTCCCACCCTCAGCAC 1332
Query 1147 ACGATCACTAACCTGTCACCATACACCAATGTCAGTGTGAAACTGATCCTCATGAACCCAGAGGGCCGGAAGGA 1220
||.|||||.||||||||.||.||||||||.|||||.|||||.||.||.||.||||||||.||||||||.|||||
Sbjct 1333 ACCATCACCAACCTGTCCCCGTACACCAACGTCAGCGTGAAGCTTATTCTGATGAACCCGGAGGGCCGCAAGGA 1406
Query 1221 AAGCCAAGAACTCATAGTGCAGACAGATGAAGACCTCCCAGGTGCTGTTCCCACTGAATCCATACAAGGAAGTA 1294
||||||||||||||..||||||||.|||||||||||||||||.|||||.||||||||||||||.|||||.|||.
Sbjct 1407 AAGCCAAGAACTCACGGTGCAGACGGATGAAGACCTCCCAGGAGCTGTCCCCACTGAATCCATCCAAGGCAGTG 1480
Query 1295 CCTTTGAAGAGAAGATATTTCTTCAGTGGAGAGAACCAACTCAAACATATGGTGTAATCACTTTATATGAGATC 1368
||||||||||||||||||||||||||||||||||.||.||.|||||||||||.||.||||||||||||||||||
Sbjct 1481 CCTTTGAAGAGAAGATATTTCTTCAGTGGAGAGAGCCGACACAAACATATGGGGTCATCACTTTATATGAGATC 1554
Query 1369 ACCTACAAAGCAGTCAGTTCCTTTGACCCAGAAATAGATTTATCCAATCAGAGTGGAAGAGTTTCAAAGCTGGG 1442
|||||||||||||||||||||||||||||.|||||||||||||||||.||.|||||..||||||||||.|||||
Sbjct 1555 ACCTACAAAGCAGTCAGTTCCTTTGACCCGGAAATAGATTTATCCAACCAAAGTGGGCGAGTTTCAAAACTGGG 1628
Query 1443 AAATGAAACCCATTTCCTGTTTTTTGGACTGTATCCGGGGACCACATACTCCTTTACCATCCGAGCTAGCACAG 1516
|||||||||||||||.|||||.|||||.||||||||.||.||.||.||||||||.||||||.||||.|||||||
Sbjct 1629 AAATGAAACCCATTTTCTGTTCTTTGGCCTGTATCCTGGAACGACGTACTCCTTCACCATCAGAGCCAGCACAG 1702
Query 1517 CTAAGGGTTTTGGGCCTCCAGCAACAAACCAGTTCACCACCAAAATATCAGCACCCTCTATGCCAGCTTATGAA 1590
|.|||||.||.||.|||||.||||||||||||||||||||.||||||||||||||.||.||||||||.||||||
Sbjct 1703 CGAAGGGGTTCGGACCTCCGGCAACAAACCAGTTCACCACAAAAATATCAGCACCATCCATGCCAGCCTATGAA 1776
Query 1591 CTTGAGACACCTTTGAATCAAACTGACAATACCGTGACAGTCATGCTGAAACCTGCCCACAGCAGAGGAGCACC 1664
.|||||||||||||||||||.|||||.|||||.|||||.||.||||||||||||||.||.||||||||.||.||
Sbjct 1777 TTTGAGACACCTTTGAATCAGACTGATAATACAGTGACTGTGATGCTGAAACCTGCACAAAGCAGAGGGGCTCC 1850
Query 1665 TGTCAGTGTCTATCAAATAGTTGTTGAGGAAGAACGTCCTCGAAGAACTAAAAAGACGACAGAAATCTTAAAGT 1738
.|||||||||||||||||.|||||||||||||||||||||||.||||||||.|||||.|||||.|||||.||||
Sbjct 1851 AGTCAGTGTCTATCAAATCGTTGTTGAGGAAGAACGTCCTCGGAGAACTAAGAAGACAACAGAGATCTTGAAGT 1924
Query 1739 GCTACCCAGTGCCAATTCACTTCCAGAATGCTTCTCTGCTGAACTCACAGTACTACTTTGCTGCAGAATTTCCT 1812
|.|||||.|||||||||||||||||||||||.||..|.||||||||||||||||||||||||||||||||||||
Sbjct 1925 GTTACCCGGTGCCAATTCACTTCCAGAATGCGTCCATCCTGAACTCACAGTACTACTTTGCTGCAGAATTTCCT 1998
Query 1813 GCAGACAGCCTCCAAGCTGCGCAGCCTTTTACAATTGGTGATAATAAGACATATAATGGATACTGGAACACTCC 1886
||||||||||||||||||||.||.||.|||||.||||||||.|||||||||||.|||||.|||||||||||.||
Sbjct 1999 GCAGACAGCCTCCAAGCTGCTCAACCATTTACCATTGGTGACAATAAGACATACAATGGCTACTGGAACACCCC 2072
Query 1887 CCTTCTCCCCTATAAAAGCTACAGAATTTATTTCCAAGCTGCTAGTAGAGCCAATGGGGAAACCAAAATAGACT 1960
|||.||||||.|||||||||||||||||||||.|||||||||||||.||||||||||||||||||||||.||||
Sbjct 2073 CCTCCTCCCCCATAAAAGCTACAGAATTTATTACCAAGCTGCTAGTCGAGCCAATGGGGAAACCAAAATTGACT 2146
Query 1961 GTGTCCAAGTGGCCACAAAAG----GA--------------------------------------------GCT 1986
||||||.|||||||||||||| || |||
Sbjct 2147 GTGTCCGAGTGGCCACAAAAGCTGCGATAATCGTGACTCAGCTTACAACACCTTACATTCGCATCGCCCCTGCT 2220
Query 1987 GC---------------------------CACTCCGAAACCAGTCCCAGAACCCGAGAAACAGACAGACCATAC 2033
|| .|||||.||.||.|||||.|||||.||||||||.||||||||.||
Sbjct 2221 GCAGGCGACGGCCAACTAACAGGGGCCGTTACTCCAAAGCCTGTCCCTGAACCTGAGAAACAAACAGACCACAC 2294
Query 2034 AGTTAAAATTGCTGGAGTCATCGCGGGCATCTTGCTGTTCGTGATTATATTTCTTGGAGTTGTGTTGGTAATGA 2107
.||||||||.||.|||||.||.||.||||||||||||||.||.||.||||||||||||||.|||.||||.||||
Sbjct 2295 GGTTAAAATCGCCGGAGTGATTGCAGGCATCTTGCTGTTTGTTATCATATTTCTTGGAGTCGTGCTGGTCATGA 2368
Query 2108 AGAAAAGGAAACTGGCCAAGAAGCGGAAAGAGACCATGAGCAGCACCCGACAGGAGATGACTGTGATGGTGAAC 2181
||||.||||||||||||||||||.||||.|||||.||||||||||||||.|||||||||||.|||||||||||.
Sbjct 2369 AGAAGAGGAAACTGGCCAAGAAGAGGAAGGAGACGATGAGCAGCACCCGGCAGGAGATGACAGTGATGGTGAAT 2442
Query 2182 TCAATGGACAAGAGCTATGCTGAGCAGGGCACAAACTGCGACGAGGCTTTCTCATTCATGGACACGCACAATCT 2255
||.|||||.|||||||||||||||||.|||||.|||||||||||.||.|||||.|||||||.||||||||||||
Sbjct 2443 TCTATGGATAAGAGCTATGCTGAGCAAGGCACCAACTGCGACGAAGCCTTCTCTTTCATGGGCACGCACAATCT 2516
Query 2256 GAATGGGAGATCTGTGTCTTCACCATCGTCCTTCACAATGAAAACAAATACACTGAGCACATCGGTGCCTAATT 2329
.|||||||||||||||||.||.|||||.|||||.||.|||||||||||.||.|||||||||||||||||.||||
Sbjct 2517 TAATGGGAGATCTGTGTCCTCGCCATCATCCTTTACCATGAAAACAAACACGCTGAGCACATCGGTGCCGAATT 2590
Query 2330 CCTATTACCCA--------------------------------------------------------------- 2340
|||||||||||
Sbjct 2591 CCTATTACCCAGACCCATTTGTGCCAACTGCAATCTTAGGAGCACAACAAACGCGACTTCCAGTGCCAATCAAT 2664
Query 2341 GATGAAACCCACACAATGGCCAGCGATACCAGCAGCCTGGTGCAGTCCCATACTTACAAGAAGCGAGAGCCGGC 2414
|||||.|||||||||||||||||.||.|||||||||||||..|||.||||||||||.|||||.||.|||.|.||
Sbjct 2665 GATGAGACCCACACAATGGCCAGTGACACCAGCAGCCTGGCACAGCCCCATACTTATAAGAAACGCGAGGCCGC 2738
Query 2415 CGACGTGCCCTATCAGACTGGGCAGCTCCACCCCGCCATCCGGGTGGCAGACCTCCTTCAGCACATCACACAGA 2488
.||||||||.||.||||||||||||||.|||||.||||||||.||||||||||||||.||.||||||||.||||
Sbjct 2739 AGACGTGCCTTACCAGACTGGGCAGCTTCACCCGGCCATCCGTGTGGCAGACCTCCTCCAACACATCACTCAGA 2812
Query 2489 TGAAGTGTGCGGAGGGCTACGGCTTCAAGGAGGAATACGAGAGCTTCTTTGAAGGGCAGTCTGCACCATGGGAC 2562
|||||||.||.||||||||.||||||||||||||.||.|||||||||||||||||.||||||||||||||||||
Sbjct 2813 TGAAGTGCGCTGAGGGCTATGGCTTCAAGGAGGAGTATGAGAGCTTCTTTGAAGGACAGTCTGCACCATGGGAC 2886
Query 2563 TCGGCTAAGAAAGGTGAGAACAGAATGAAGAACAGATACGGGAATATCATTGCATACGATCATTCCCGAGTGAG 2636
||.||||||||||..|||||||||||||||||||||||||||||.|||||||||||.|||||.||.||.||..|
Sbjct 2887 TCTGCTAAGAAAGACGAGAACAGAATGAAGAACAGATACGGGAACATCATTGCATATGATCACTCTCGGGTACG 2960
Query 2637 GCTGCAGACAATAGAAGGAGACACAAACTCAGACTATATCAATGGCAATTATATCGATGGTTATCATCGACCCA 2710
|||.||||...|.|||||.||||..||.||||||||.||||||||||||||.||||||||.|||||||||||||
Sbjct 2961 GCTCCAGATGCTGGAAGGGGACAACAATTCAGACTACATCAATGGCAATTACATCGATGGCTATCATCGACCCA 3034
Query 2711 ATCATTACATTGCTACCCAAGGGCCAATGCAGGAAACCATCTATGACTTCTGGAGGATGGTGTGGCACGAAAAC 2784
|||||||.|||||.||||||| ||
Sbjct 3035 ATCATTATATTGCAACCCAAG---CA------------------------------------------------ 3057
Query 2785 ACTGCAAGTATCATCATGGTGACCAATCTTGTGGAAGTGGGAAGGGTCAAATGCTGCAAATACTGGCCAGATGA 2858
Sbjct 3058 -------------------------------------------------------------------------- 3057
Query 2859 CACAGAGATATATAAAGACATTAAAGTTACCCTAATAGAAACAGAACTACTGGCAGAATATGTGATAAGAACAT 2932
Sbjct 3058 -------------------------------------------------------------------------- 3057
Query 2933 TTGCTGTTGAAAAGAGAGGTGTGCATGAAATCCGAGAGATCAGACAGTTTCACTTCACTGGCTGGCCGGATCGT 3006
Sbjct 3058 -------------------------------------------------------------------------- 3057
Query 3007 GGGGTCCCCTACCATGCCACCGGCCTGCTGGGATTCGTGCGGCAAGTCAAGTCCAAGAGCCCGCCCAGTGCAGG 3080
Sbjct 3058 -------------------------------------------------------------------------- 3057
Query 3081 CCCACTGGTGGTGCACTGCAGTGCTGGTGCAGGGAGGACTGGCTGTTTCATCGTCATTGATATCATGTTGGACA 3154
Sbjct 3058 -------------------------------------------------------------------------- 3057
Query 3155 TGGCCGAAAGGGAAGGGGTCGTAGACATCTACAACTGCGTCAGGGAGCTGCGGTCACGGAGGGTGAACATGGTG 3228
Sbjct 3058 -------------------------------------------------------------------------- 3057
Query 3229 CAAACAGAGGAGCAGTATGTGTTTATCCACGATGCGATCCTGGAAGCCTGTCTTTGTGGGGACACCTCTGTGCC 3302
Sbjct 3058 -------------------------------------------------------------------------- 3057
Query 3303 TGCTTCCCAAGTTAGGTCTCTGTATTATGACATGAACAAACTGGATCCACAGACAAACTCAAGCCAGATTAAAG 3376
Sbjct 3058 -------------------------------------------------------------------------- 3057
Query 3377 AGGAATTCCGGACGCTAAACATGGTGACACCAACGCTGCGAGTAGAGGACTGCAGCATCGCACTGTTGCCCCGG 3450
Sbjct 3058 -------------------------------------------------------------------------- 3057
Query 3451 AACCATGAGAAAAACCGGTGCATGGACATCCTGCCCCCAGACCGCTGCCTGCCCTTCCTCATCACCATCGATGG 3524
Sbjct 3058 -------------------------------------------------------------------------- 3057
Query 3525 GGAGAGCAGCAACTACATCAATGCTGCCCTCATGGACAGCTATAAACAGCCTTCAGCTTTTATAGTCACCCAGC 3598
Sbjct 3058 -------------------------------------------------------------------------- 3057
Query 3599 ATCCTTTGCCAAACACAGTGAAAGACTTTTGGAGACTGGTCCTGGATTATCACTGCACATCCGTAGTTATGCTA 3672
Sbjct 3058 -------------------------------------------------------------------------- 3057
Query 3673 AATGATGTGGATCCTGCCCAGTTGTGTCCACAGTACTGGCCAGAAAACGGAGTACACAGACACGGCCCCATCCA 3746
Sbjct 3058 -------------------------------------------------------------------------- 3057
Query 3747 GGTGGAATTTGTCTCTGCTGACCTGGAAGAGGACATCATCAGCAGGATATTCCGCATTTACAATGCCGCCAGAC 3820
Sbjct 3058 -------------------------------------------------------------------------- 3057
Query 3821 CCCAAGATGGATATCGGATGGTGCAGCAATTCCAGTTCCTGGGCTGGCCGATGTACAGGGACACACCAGTGTCT 3894
Sbjct 3058 -------------------------------------------------------------------------- 3057
Query 3895 AAGCGCTCCTTCTTGAAGCTCATTCGCCAGGTGGACAAGTGGCAAGAGGAATACAATGGCGGGGAAGGCCGCAC 3968
Sbjct 3058 -------------------------------------------------------------------------- 3057
Query 3969 CGTTGTGCACTGCTTGAACGGGGGAGGCCGCAGTGGGACGTTCTGCGCCATCAGCATCGTATGTGAGATGCTCC 4042
Sbjct 3058 -------------------------------------------------------------------------- 3057
Query 4043 GGCACCAGAGAACCGTGGATGTCTTTCACGCTGTGAAGACACTGAGGAACAACAAGCCCAACATGGTCGACCTC 4116
Sbjct 3058 -------------------------------------------------------------------------- 3057
Query 4117 CTGGATCAGTACAAGTTCTGCTACGAGGTGGCCCTGGAATACTTGAATTCTGGC 4170
Sbjct 3058 ------------------------------------------------------ 3057
