Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11139
- Subject:
- NM_001079690.1
- Aligned Length:
- 3323
- Identities:
- 1088
- Gaps:
- 2071
Alignment
Query 1 ATGTCACTGAACAACTCTTCCAATGTATTTCTGGATTCAGTGCCCAGTAATACCAATCGCTTTCAAGTTAGTGT 74
|||||..|.|.||.|.|||||| |.|||||||||||||.|.|||.|||||||||.||...|||
Sbjct 1 ATGTCGGTCAGCATCCCTTCCA------------ACTCAGTGCCCAGTAGTGCCAGTCGCTTTCAGGTCCATGT 62
Query 75 CATAAATGAGAACCATGAGAGCAGTGCAGCTGCAGAT----GACAATACTGACCCACCACATTATGAAGAAACC 144
.|||||.|||..||||| |||||||.||.||.| | ||||.|.|.|||||.||||||||||||||.|||
Sbjct 63 TATAAACGAGGGCCATG---GCAGTGCGGCAGCCG-TGGGCGACAGTGCAGACCCCCCACATTATGAAGAGACC 132
Query 145 TCTTTTGGGGATGAAGCTCAGAAAAGACTCAGAATCAGCTTTAGGCCTGGGAATCAGGAGTGCTATGACAATTT 218
|||||.|||||.|||||.||.||.|||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 TCTTTCGGGGACGAAGCCCAAAACAGACTGAGAATCAGCTTTAGGCCTGGGAATCAGGAGTGCTATGACAATTT 206
Query 219 CCTCCAAAGTGGAGAAACTGCTAAAACAGATGCCAGTTTTCACGCTTATGATTCTCACACAAACACATACTATC 292
.|||||||.||||||.|||||.||||||||..|||..||||||||.||.||.||||||||||||||||||||.|
Sbjct 207 TCTCCAAACTGGAGAGACTGCCAAAACAGACACCACGTTTCACGCCTACGACTCTCACACAAACACATACTACC 280
Query 293 TACAAACTTTTGGCCACAACACCATGGATGCCGTTCCCAAGATAGAGTACTATCGTAACACCGGCAGCATCAGT 366
||||||||||||||||||||||||||||.|||||.||||||||.||.|||||.||.|||||.||||||.|.||.
Sbjct 281 TACAAACTTTTGGCCACAACACCATGGACGCCGTCCCCAAGATTGAATACTACCGCAACACAGGCAGCGTGAGC 354
Query 367 GGGCCCAAGGTCAACCGACCCAGCCTGCTTGAGATTCACGAGCAACTCGCAAAGAATGTGGCAGTCACCCCAAG 440
|||||||||||||||||.|||||||||||.|||||.||||||||.||.||.|||||||||.|.||..||||..|
Sbjct 355 GGGCCCAAGGTCAACCGGCCCAGCCTGCTGGAGATCCACGAGCAGCTGGCTAAGAATGTGACTGTGGCCCCTGG 428
Query 441 TTCAGCTGACAGAGTTGCTAACGGTGATGGGATACCTGGAGATGAACAAGCTGAAAATAAGGAAGATGATCAAG 514
||||||||||||.||||||||.||.||||||||.|||||||||||.|||||.|||||.||||||||.|| ||.|
Sbjct 429 TTCAGCTGACAGGGTTGCTAATGGAGATGGGATGCCTGGAGATGAGCAAGCAGAAAACAAGGAAGAAGA-CATG 501
Query 515 -CTGGTGTTGTGAAGTTTGGATGGGTGAAAGGTGTGCTGGTAAGATGCATGCTGAACATCTGGGGAGTCATGCT 587
||||.|||||||||||||||||||||||||||||||||||..|||||||||||||||||||||||||||||||
Sbjct 502 ACTGGAGTTGTGAAGTTTGGATGGGTGAAAGGTGTGCTGGTGCGATGCATGCTGAACATCTGGGGAGTCATGCT 575
Query 588 CTTCATTCGCCTCTCCTGGATTGTTGGAGAAGCTGGAATTGGTCTTGGAGTTCTCATAATT------------C 649
||||||||||||||||||||||||.||||||||.|||||||||||.||.||..||||.||| .
Sbjct 576 CTTCATTCGCCTCTCCTGGATTGTAGGAGAAGCGGGAATTGGTCTGGGCGTCATCATCATTGGCCTGAGCGTAG 649
Query 650 TTCTTTCCAC-----CATGGTAACTTCTATTACTGGGTTGTCAACT-TCTGCGATAGCAACTAACGGGTTTGTT 717
||.|..|.|| || ||| |.||||| ||||..|| |.||| ||.|||||..|.||.
Sbjct 650 TTGTGACAACACTCACA-GGT-ATTTCTA---------TGTCGGCTATTTGC-------ACAAACGGAGTGGTG 705
Query 718 CGTGGAGGTGGGGCCTACTATCTTATTTCCAGAAGTTTAGGGCCCGAGTTCGGTGGGTCAATAGGCCTGATCTT 791
||.||||||||.||||||||.||.||||||.|.||.||||||||.|||||||||||||||||||||.|||||||
Sbjct 706 CGAGGAGGTGGAGCCTACTACCTGATTTCCCGGAGCTTAGGGCCTGAGTTCGGTGGGTCAATAGGCTTGATCTT 779
Query 792 TGCTTTTGCTAATGCAGTGGCTGTTGCTATGTATGTGGTGGGATTTGCTGAGACTGTAGTAGATCTTCTTAAGG 865
|||||||||.||||||||||||||.||||||||||||||||||||.||.||||||||.||.|||||||||||||
Sbjct 780 TGCTTTTGCCAATGCAGTGGCTGTCGCTATGTATGTGGTGGGATTCGCGGAGACTGTCGTGGATCTTCTTAAGG 853
Query 866 AGAGTGATTCGATGATGGTGGATCCAACCAATGACATCCGGATTATAGGCTCCATCACAGTGGTGATTCTTCTA 939
||||.|||||.|||||||||||||||||||||||||||||.||.||.||.||||||||.|||||||||||||||
Sbjct 854 AGAGCGATTCAATGATGGTGGATCCAACCAATGACATCCGCATCATCGGTTCCATCACCGTGGTGATTCTTCTA 927
Query 940 GGAATTTCAGTAGCTGGAATGGAATGGGAGGCAAAGGCCCAAGTCATTCTTCTGGTCATTCTTCTAATTGCTAT 1013
|||||.|||||||||||.|||||.|||||.||||||||.|||||||||||.||||||||||||||.|||||.||
Sbjct 928 GGAATCTCAGTAGCTGGGATGGAGTGGGAAGCAAAGGCTCAAGTCATTCTCCTGGTCATTCTTCTCATTGCCAT 1001
Query 1014 TGCAAACTTCTTCATTGGAACTGTCATTCCATCCAACAATGAGAAAAAGTCCAGAGGTTTCTTTAATTACCAAG 1087
|||||||||||||||||||||||||||.|||||||||||||||||.||.||||||||.||||||||.|||||||
Sbjct 1002 TGCAAACTTCTTCATTGGAACTGTCATCCCATCCAACAATGAGAAGAAATCCAGAGGCTTCTTTAACTACCAAG 1075
Query 1088 CATCAATATTTGCAGAAAACTTTGGGCCACGCTTCACAAAGGGTGAAGGCTTCTTCTCTGTCTTTGCCATTTTT 1161
||||.||||||||.|||||||||||||||.|||||||||||||.||||||||||||||.|||||||||||.|||
Sbjct 1076 CATCTATATTTGCGGAAAACTTTGGGCCAAGCTTCACAAAGGGGGAAGGCTTCTTCTCGGTCTTTGCCATCTTT 1149
Query 1162 TTCCCAGCAGCTACTGGGATTCTTGCTGGTGCCAATATCTCAGGAGATTTGGAGG-----------------CA 1218
||||||||.||||||||||||||||||||||||||.|||||.|||||..|||||| |.
Sbjct 1150 TTCCCAGCTGCTACTGGGATTCTTGCTGGTGCCAACATCTCTGGAGACCTGGAGGATCCCCAGGACGCCATCCC 1223
Query 1219 CTGAGGAAACAAG-----GAGCTTCACCTCTC--------CCT-CA-AGG---------------AGC------ 1256
|.||||.|.||.| .|.||||| ||.| ||| || ||| |||
Sbjct 1224 CAGAGGGACCATGCTGGCCATCTTCA--TCACCACCGTGGCCTACATAGGTGTTGCTATTTGCGTAGCCGCCTG 1295
Query 1257 -----TCAGAG-------TCGAAGGAGGA--GACAGACTTCCCTTATA-------------------------- 1290
||.||| |.|.||.|.|| |||| .|.||..||.|.
Sbjct 1296 TGTGGTCCGAGATGCCACTGGCAGCATGAATGACA-CCATCGTTTCTGGGATGAATTGCAATGGCTCTGCGGCC 1368
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1369 TGTGGGTTGGGCTACGACTTCTCAAGATGTCAACACGAGCCATGTCAGTATGGGCTGATGAACAATTTCCAGGT 1442
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1443 CATGAGCATGGTGTCCGGGTTCGGGCCCCTCATCACTGCAGGGATCTTTTCGGCAACACTGTCTTCCGCCCTGG 1516
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1517 CCTCCCTCGTCAGTGCGCCCAAAGTATTCCAGGCTCTGTGCAAGGACAACATCTTCAAAGGACTGCAGTTCTTC 1590
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1591 GCAAAGGGCTATGGGAAAAACAACGAGCCCCTGAGAGGGTACTTCCTCACTTTTGTGATAGCCATGGCATTCAT 1664
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1665 TCTCATCGCCGAGCTGAATGTCATTGCCCCCATCATCTCCAACTTCTTCCTGGCCTCATATGCGCTTATTAATT 1738
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1739 TCTCCTGTTTCCATGCCTCGTATGCCAAATCTCCAGGATGGAGGCCTGCATATGGGATTTACAACATGTGGGTA 1812
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1813 TCTCTTTTTGGAGCGATTTTGTGCTGTGCAGTCATGTTTGTCATCAACTGGTGGGCAGCTGTCATCACTTATGT 1886
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1887 CATTGAGTTATTCCTCTATATCTATGTGACTTATAAGAAGCCAGATGTGAACTGGGGCTCCTCCACACAGGCTC 1960
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 1961 TGTCCTATGTGAGTGCTTTAGACAACGCTCTGGAATTAACCACAGTGGAAGACCATGTGAAAAACTTCAGACCC 2034
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2035 CAGTGCATTGTCTTAACAGGCGGACCCATGACTAGACCCGCTCTCTTGGATATAACCCACGCCTTTACGAAGAA 2108
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2109 TAGTGGCCTCTGCATCTGCTGCGAAGTCTTCGTGGGACCTCGCAAGCTGTGTGTTAAAGAGATGAACAGCGGCA 2182
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2183 TGGCTAAAAAACAGGCCTGGCTTATAAAGAACAAAATCAAAGCTTTTTATGCTGCAGTGGCTGCAGACTGCTTC 2256
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2257 AGGGACGGTGTCCGGAGCCTCCTTCAGGCCTCAGGCTTGGGGAGAATGAAGCCAAACACTCTCGTGATTGGATA 2330
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2331 CAAAAAGAACTGGAGGAAAGCTCCCTTGTCAGAGCTGGAGAACTACGTGGGAATCATACATGACGCCTTTGACT 2404
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2405 TTGAGATTGGCGTGGTCATAGTCAGAATCAGCCAAGGCTTTGACATCTCTCCGGTTCTCCAGGTACAAGACGAA 2478
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2479 CTGGAGAAACTGGAACAGGAGAGATTGGCTCTGGAGGCCGCAATCAAAGACAACGAGTGTGAGGAGGGCAAGGG 2552
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2553 GGGCATCCGAGGCTTGTTTAAGAAGGCCGGCAAGCTGAACATTACCAAGCCAGCCCCCAAGAAAGACGGCAACA 2626
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2627 TCAGCAGCATCCAGTCAATGCACGTCGGGGAGTTCAATCAGAAACTGGTGGAAGCCAGCGCTCAGTTTAAAAAG 2700
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2701 AAGCAGGGAAAAGGCACGATTGATGTTTGGTGGTTATTTGATGATGGAGGGTTAACACTGCTTATCCCATATAT 2774
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2775 CTTGACTCTCAGAAAAAAATGGAAAGATTGTAAGTTAAGAATCTATGTTGGAGGAAAGATCAACCGCATCGAAG 2848
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2849 AGGAAAAAATTTCAATGGCTTCACTTCTCAGCAAATTTAGAATAAAATTTGCAGACATCCATATAATTGGAGAC 2922
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2923 ATCAACATTAAGCCAAACAAAGAGAGCTGGAAAGTCTTTGAAGAGATGATTGAACCTTATCGGCTTCATGAAAG 2996
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 2997 CCACAAAGATTTGACCACTGCTGAGAAATTAAAAAGAGAAAGTCCATGGAAAATTACAGATGCAGAACTGGAAG 3070
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3071 CAGTCAAGGAAAAGAGTTACCGTCAAGTTCGACTGAACGAGCTCTTACAGGAACACTCCAGAGCCGCCAACCTC 3144
Query 1291 -------------------------------------------------------------------------- 1290
Sbjct 3145 ATCGTGTTGAGCCTTCCAGTGGCAAGAAAAGGATCTATTTCGGATTTGTTGTACATGGCGTGGTTAGAAATCCT 3218
Query 1291 ------------------------------------------------------------------- 1290
Sbjct 3219 GACCAAGAACCTTCCTCCTGTGTTACTGGTTAGAGGAAATCACAAAAATGTCTTAACATTTTACTCT 3285
