Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11149
- Subject:
- NM_178010.4
- Aligned Length:
- 1970
- Identities:
- 1027
- Gaps:
- 883
Alignment
Query 1 ATGTCTTCCAAGCGACCAGCCTCTCCGTATGGGGAAGCAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 AGTGGAAGAAGAGGAGAGTGACGGGCTCCCAGCCTTTCACCTTCCCTTGCATGTGAGTTTTCCCAACAAGCCTC 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 ACTCTGAGGAATTTCAGCCAGTTTCTCTGCTGACGCAAGAGACTTGTGGCCATAGGACTCCCACTTCTCAGCAC 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 AATACAATGGAAGTTGATGGCAATAAAGTTATGTCTTCATTTGCCCCACACAACTCATCTACCTCACCTCAGAA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 GGCAGAAGAAGGTGGGCGACAGAGTGGCGAGTCCTTGTCTAGTACAGCCCTGGGAACTCCTGAACGGCGCAAGG 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 GCAGTTTAGCTGATGTTGTTGACACCTTGAAGCAGAGGAAAATGGAAGAGCTCATCAAAAACGAGCCGGAAGAA 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 ACCCCCAGTATTGAAAAACTACTCTCAAAGGACTGGAAAGACAAGCTTCTTGCAATGGGATCGGGGAACTTTGG 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 CGAAATAAAAGGGACTCCCGAGAGCTTAGCTGAGAAAGAAAGGCAACTCATGGGTATGATCAACCAGCTGACCA 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 GCCTCCGAGAGCAGCTGTTGGCTGCCCACGATGAGCAGAAGAAACTAGCTGCCTCTCAGATTGAGAAACAGCGT 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 CA-GCA-AATGGAGCTGGCCAAGCAGCAACAAGAACAAATTGCAAGACAGCAGCAGCAGCTTCTA-CAGCAACA 737
| ||| .|||.|| |||| .||||.|| .|||| ||| ||||.| |
Sbjct 1 -ATGCATGATGAAG-TGGC---ACAGCCAC-TGAAC--------------------------CTATCAGCTA-A 41
Query 738 ACACAAAATCAATTTGCTCCAGCAACAGATCCAGGTTCAAGGTCAGCTGCCGCCATTAATGATTCCCGTATTCC 811
||.|||.|.| |.||.| .||||...|.||| || |||.|..||.| |.|||.|||.||
Sbjct 42 ACCCAAGACC--TCTGAT--GGCAAATCACCCA----CA---TCACCCACCTC---------TCCCCATATGCC 95
Query 812 --CTCCTGATCAACGGACACTGGCTGCAGCTGCCCAGCAAGGATTCCTCCTC----CCT-----CCAGGCTTCA 874
|| |||| .||...|||.||| .|||| |||| |||| ||| |||| ||
Sbjct 96 AGCT-CTGA-GAATAAACAGTGG-GGCAG--GCCC-------------CCTCAAAGCCTCTGTCCCAG----CA 147
Query 875 GCTATAAGGCTGGATGTAGTGACCCTTACCCTGTTCAGC-----TGATCCCA-------ACT------ACCATG 930
||..|| || |||| || |||||| |.|.|.|| ||| |||||
Sbjct 148 GCGTTA--GC------TAGT--CC---------TTCAGCCAGAGTTAGCACAATAGGTTACTTAAATGACCAT- 201
Query 931 GCAGCTGCTGCCGCAGCAACACCAGGCTTAGGCCCACTCCAACTGCAGCAGTTATATGCTGCCCAGCTAGCTGC 1004
|.||||| .||||| ||| ||.||||| |.||| .|.||
Sbjct 202 ---GATGCTG--------TCACCA-----AGG--CAATCCAA--GAAGC--------------------TCGGC 235
Query 1005 -AATGCAG--GTATCTCCAGGA-GGGA-----AGCTGCCAGGCATACCCCAAGGCAACCTTGGT-GCTGCTGTA 1068
||||.|| |.|.|||| || |||| ||.|||..| |.||.|| ||| ||||.|||
Sbjct 236 AAATGAAGGAGCAACTCC--GACGGGAACAACAGGTGCTTG---------ATGGGAA----GGTGGCTGTTGT- 293
Query 1069 TCTCCTACCAGCATTCACACAGACAAGAGCACA--AACAGCCCACCACCCAAAAGCAAGGAAAAAACAACACTG 1140
|.|| ||.|..|..|.|| |||.|||.| ||..|| ||||||||||||||||||
Sbjct 294 ----------GAAT------AGTCTGGGTCTCAATAACTGCCGA--ACAGAA----AAGGAAAAAACAACACTG 345
Query 1141 GAGAGTCTGACTCAGCAACTGGCAGTTAAACAGAATGAAGAAGGAAAATTTAGCCATGCAATGATGGATTTCAA 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 GAGAGTCTGACTCAGCAACTGGCAGTTAAACAGAATGAAGAAGGAAAATTTAGCCATGCAATGATGGATTTCAA 419
Query 1215 TCTGAGTGGAGATTCTGATGGAAGTGCTGGAGTCTCAGAGTCAAGAATTTATAGGGAATCCCGAGGGCGTGGTA 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCTGAGTGGAGATTCTGATGGAAGTGCTGGAGTCTCAGAGTCAAGAATTTATAGGGAATCCCGAGGGCGTGGTA 493
Query 1289 GCAATGAACCCCACATAAAGCGTCCAATGAATGCCTTCATGGTGTGGGCTAAAGATGAACGGAGAAAGATCCTT 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 GCAATGAACCCCACATAAAGCGTCCAATGAATGCCTTCATGGTGTGGGCTAAAGATGAACGGAGAAAGATCCTT 567
Query 1363 CAAGCCTTTCCTGACATGCACAACTCCAACATCAGCAAGATATTGGGATCTCGCTGGAAAGCTATGACAAACCT 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 CAAGCCTTTCCTGACATGCACAACTCCAACATCAGCAAGATATTGGGATCTCGCTGGAAAGCTATGACAAACCT 641
Query 1437 AGAGAAACAGCCATATTATGAGGAGCAAGCCCGTCTCAGCAAGCAGCACCTGGAGAAGTACCCTGACTATAAGT 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 AGAGAAACAGCCATATTATGAGGAGCAAGCCCGTCTCAGCAAGCAGCACCTGGAGAAGTACCCTGACTATAAGT 715
Query 1511 ACAAGCCCAGGCCAAAGCGCACCTGCCTGGTGGATGGCAAAAAGCTGCGCATTGGTGAATACAAGGCAATCATG 1584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ACAAGCCCAGGCCAAAGCGCACCTGCCTGGTGGATGGCAAAAAGCTGCGCATTGGTGAATACAAGGCAATCATG 789
Query 1585 CGCAACAGGCGGCAGGAAATGCGGCAGTACTTCAATGTTGGGCAACAAGCACAGATCCCCATTGCCACTGCTGG 1658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 CGCAACAGGCGGCAGGAAATGCGGCAGTACTTCAATGTTGGGCAACAAGCACAGATCCCCATTGCCACTGCTGG 863
Query 1659 TGTTGTGTACCCTGGAGCCATCGCCATGGCTGGGATGCCCTCCCCTCACCTGCCCTCGGAGCACTCAAGCGTGT 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 TGTTGTGTACCCTGGAGCCATCGCCATGGCTGGGATGCCCTCCCCTCACCTGCCCTCGGAGCACTCAAGCGTGT 937
Query 1733 CTAGCAGCCCAGAGCCTGGGATGCCTGTTATCCAGAGCACTTACGGTGTGAAAGGAGAGGAGCCACATATCAAA 1806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 CTAGCAGCCCAGAGCCTGGGATGCCTGTTATCCAGAGCACTTACGGTGTGAAAGGAGAGGAGCCACATATCAAA 1011
Query 1807 GAAGAGATACAGGCCGAGGACATCAATGGAGAAATTTATGATGAGTACGACGAGGAAGAGGATGATCCAGATGT 1880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GAAGAGATACAGGCCGAGGACATCAATGGAGAAATTTATGATGAGTACGACGAGGAAGAGGATGATCCAGATGT 1085
Query 1881 AGATTATGGGAGTGACAGTGAAAACCATATTGCAGGACAAGCCAAC 1926
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 AGATTATGGGAGTGACAGTGAAAACCATATTGCAGGACAAGCCAAC 1131
