Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11149
Subject:
NM_178010.4
Aligned Length:
1970
Identities:
1027
Gaps:
883

Alignment

Query    1  ATGTCTTCCAAGCGACCAGCCTCTCCGTATGGGGAAGCAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AGTGGAAGAAGAGGAGAGTGACGGGCTCCCAGCCTTTCACCTTCCCTTGCATGTGAGTTTTCCCAACAAGCCTC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  ACTCTGAGGAATTTCAGCCAGTTTCTCTGCTGACGCAAGAGACTTGTGGCCATAGGACTCCCACTTCTCAGCAC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  AATACAATGGAAGTTGATGGCAATAAAGTTATGTCTTCATTTGCCCCACACAACTCATCTACCTCACCTCAGAA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  GGCAGAAGAAGGTGGGCGACAGAGTGGCGAGTCCTTGTCTAGTACAGCCCTGGGAACTCCTGAACGGCGCAAGG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  GCAGTTTAGCTGATGTTGTTGACACCTTGAAGCAGAGGAAAATGGAAGAGCTCATCAAAAACGAGCCGGAAGAA  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  ACCCCCAGTATTGAAAAACTACTCTCAAAGGACTGGAAAGACAAGCTTCTTGCAATGGGATCGGGGAACTTTGG  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  CGAAATAAAAGGGACTCCCGAGAGCTTAGCTGAGAAAGAAAGGCAACTCATGGGTATGATCAACCAGCTGACCA  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  GCCTCCGAGAGCAGCTGTTGGCTGCCCACGATGAGCAGAAGAAACTAGCTGCCTCTCAGATTGAGAAACAGCGT  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  CA-GCA-AATGGAGCTGGCCAAGCAGCAACAAGAACAAATTGCAAGACAGCAGCAGCAGCTTCTA-CAGCAACA  737
             | ||| .|||.|| ||||   .||||.|| .||||                          ||| ||||.| |
Sbjct    1  -ATGCATGATGAAG-TGGC---ACAGCCAC-TGAAC--------------------------CTATCAGCTA-A  41

Query  738  ACACAAAATCAATTTGCTCCAGCAACAGATCCAGGTTCAAGGTCAGCTGCCGCCATTAATGATTCCCGTATTCC  811
            ||.|||.|.|  |.||.|  .||||...|.|||    ||   |||.|..||.|         |.|||.|||.||
Sbjct   42  ACCCAAGACC--TCTGAT--GGCAAATCACCCA----CA---TCACCCACCTC---------TCCCCATATGCC  95

Query  812  --CTCCTGATCAACGGACACTGGCTGCAGCTGCCCAGCAAGGATTCCTCCTC----CCT-----CCAGGCTTCA  874
              || |||| .||...|||.||| .||||  ||||             ||||    |||     ||||    ||
Sbjct   96  AGCT-CTGA-GAATAAACAGTGG-GGCAG--GCCC-------------CCTCAAAGCCTCTGTCCCAG----CA  147

Query  875  GCTATAAGGCTGGATGTAGTGACCCTTACCCTGTTCAGC-----TGATCCCA-------ACT------ACCATG  930
            ||..||  ||      ||||  ||         ||||||     |.|.|.||       |||      ||||| 
Sbjct  148  GCGTTA--GC------TAGT--CC---------TTCAGCCAGAGTTAGCACAATAGGTTACTTAAATGACCAT-  201

Query  931  GCAGCTGCTGCCGCAGCAACACCAGGCTTAGGCCCACTCCAACTGCAGCAGTTATATGCTGCCCAGCTAGCTGC  1004
               |.|||||        .|||||     |||  ||.|||||  |.|||                    .|.||
Sbjct  202  ---GATGCTG--------TCACCA-----AGG--CAATCCAA--GAAGC--------------------TCGGC  235

Query 1005  -AATGCAG--GTATCTCCAGGA-GGGA-----AGCTGCCAGGCATACCCCAAGGCAACCTTGGT-GCTGCTGTA  1068
             ||||.||  |.|.||||  || ||||     ||.|||..|         |.||.||    ||| ||||.||| 
Sbjct  236  AAATGAAGGAGCAACTCC--GACGGGAACAACAGGTGCTTG---------ATGGGAA----GGTGGCTGTTGT-  293

Query 1069  TCTCCTACCAGCATTCACACAGACAAGAGCACA--AACAGCCCACCACCCAAAAGCAAGGAAAAAACAACACTG  1140
                      |.||      ||.|..|..|.||  |||.|||.|  ||..||    ||||||||||||||||||
Sbjct  294  ----------GAAT------AGTCTGGGTCTCAATAACTGCCGA--ACAGAA----AAGGAAAAAACAACACTG  345

Query 1141  GAGAGTCTGACTCAGCAACTGGCAGTTAAACAGAATGAAGAAGGAAAATTTAGCCATGCAATGATGGATTTCAA  1214
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  346  GAGAGTCTGACTCAGCAACTGGCAGTTAAACAGAATGAAGAAGGAAAATTTAGCCATGCAATGATGGATTTCAA  419

Query 1215  TCTGAGTGGAGATTCTGATGGAAGTGCTGGAGTCTCAGAGTCAAGAATTTATAGGGAATCCCGAGGGCGTGGTA  1288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  420  TCTGAGTGGAGATTCTGATGGAAGTGCTGGAGTCTCAGAGTCAAGAATTTATAGGGAATCCCGAGGGCGTGGTA  493

Query 1289  GCAATGAACCCCACATAAAGCGTCCAATGAATGCCTTCATGGTGTGGGCTAAAGATGAACGGAGAAAGATCCTT  1362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  494  GCAATGAACCCCACATAAAGCGTCCAATGAATGCCTTCATGGTGTGGGCTAAAGATGAACGGAGAAAGATCCTT  567

Query 1363  CAAGCCTTTCCTGACATGCACAACTCCAACATCAGCAAGATATTGGGATCTCGCTGGAAAGCTATGACAAACCT  1436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  568  CAAGCCTTTCCTGACATGCACAACTCCAACATCAGCAAGATATTGGGATCTCGCTGGAAAGCTATGACAAACCT  641

Query 1437  AGAGAAACAGCCATATTATGAGGAGCAAGCCCGTCTCAGCAAGCAGCACCTGGAGAAGTACCCTGACTATAAGT  1510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  642  AGAGAAACAGCCATATTATGAGGAGCAAGCCCGTCTCAGCAAGCAGCACCTGGAGAAGTACCCTGACTATAAGT  715

Query 1511  ACAAGCCCAGGCCAAAGCGCACCTGCCTGGTGGATGGCAAAAAGCTGCGCATTGGTGAATACAAGGCAATCATG  1584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  716  ACAAGCCCAGGCCAAAGCGCACCTGCCTGGTGGATGGCAAAAAGCTGCGCATTGGTGAATACAAGGCAATCATG  789

Query 1585  CGCAACAGGCGGCAGGAAATGCGGCAGTACTTCAATGTTGGGCAACAAGCACAGATCCCCATTGCCACTGCTGG  1658
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  790  CGCAACAGGCGGCAGGAAATGCGGCAGTACTTCAATGTTGGGCAACAAGCACAGATCCCCATTGCCACTGCTGG  863

Query 1659  TGTTGTGTACCCTGGAGCCATCGCCATGGCTGGGATGCCCTCCCCTCACCTGCCCTCGGAGCACTCAAGCGTGT  1732
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  864  TGTTGTGTACCCTGGAGCCATCGCCATGGCTGGGATGCCCTCCCCTCACCTGCCCTCGGAGCACTCAAGCGTGT  937

Query 1733  CTAGCAGCCCAGAGCCTGGGATGCCTGTTATCCAGAGCACTTACGGTGTGAAAGGAGAGGAGCCACATATCAAA  1806
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  938  CTAGCAGCCCAGAGCCTGGGATGCCTGTTATCCAGAGCACTTACGGTGTGAAAGGAGAGGAGCCACATATCAAA  1011

Query 1807  GAAGAGATACAGGCCGAGGACATCAATGGAGAAATTTATGATGAGTACGACGAGGAAGAGGATGATCCAGATGT  1880
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012  GAAGAGATACAGGCCGAGGACATCAATGGAGAAATTTATGATGAGTACGACGAGGAAGAGGATGATCCAGATGT  1085

Query 1881  AGATTATGGGAGTGACAGTGAAAACCATATTGCAGGACAAGCCAAC  1926
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086  AGATTATGGGAGTGACAGTGAAAACCATATTGCAGGACAAGCCAAC  1131

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