Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11159
- Subject:
- XR_001738910.2
- Aligned Length:
- 5248
- Identities:
- 801
- Gaps:
- 4447
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTGCTCCGGGCGCGTCAGGCAGGGGGTGGGGAGCAGGGGCCGGGCGGGCGCTCGGCTCCCAGCCGCGCTCCCTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGGCCACTAGCGCTCCCGCGCGCGCCCGGCCGCCTTCATGTGAAGCGCCGGCCCTCCGCCCCTTCCCTCCCCTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCTTCCCTCCCTCCCTCCCTGTCCCCTCCTCCTCCTCCTCCTCCTCCGGCGCCCGCTTCAGCTCCCCGGGGCCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTGCCCGGCCGGGCGCTGACAGCAAGGGCGGGGGTCCCTGCCGCCGCCTTGTCTCGCGCAGGGTCCGGCTGGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTAGCGGAGCCCCCAGTGCGGCCATGGACCGGCCCCTGTCGTCGTCGGCGGAGGCGGAGGAGGAACTGGAGTGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAAGTGGCGAGTCGCAGGAGGAAGGCCTGGGCCAAGTGCCGCAGCTCCTGGCAAGCGTCGGAGACGGAGGATCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTCCACAGAAGCGACGACGCAGGACGAGGAGGAGGACGAGGAGGAGGACCTCCCCGGCGCGCAGCTGCCGGCAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CGGGGGGAAGAGGAAACGTGCCCAACGAGAAGATCGCGATATGGCTCAAGGACTGCCGTACACCTTTGGGAGCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TCACTGGATGAACAAAGCAGTAGTACACTCAAGGGTGTGCTTGTGAGAAATGGAGGAAGTTTTGAAGATGATTT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTCATTGGGAGCTGAAGCCAACCACCTCCATGAAAGTGATGCTCAAATTGAAAACTGCAATAATATCTTGGCCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAGAGAGAAGATTACAGTTTCATCAGAAAGGGAGAAGTATGAATTCCACTGGATCTGGGAAAAGTAGTGGGACA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GTTTCAAGTGTTTCAGAATTGTTGGAACTTTATGAGGAAGATCCTGAAGAAATTCTTTATAATCTTGGATTTGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ACGTGATGAACCAGATATTGCTTCTAAAATTCCTTCCAGATTTTTTAATTCATCATCCTTTGCCAAAGGGATAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATATTAAAGTATTTTTGAGTGCTCAGATGCAACGGATGGAAGTAGAAAACCCAAATTATGCTTTAACAAGCCGT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTTCGTCAAATTGAAGTGCTTACTACTGTGGCCAATGCGTTTTCTTCTTTATATTCTCAAGTCTCCGGGACGCC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCTGCAGAGAATTGGAAGTATGTCCTCAGTGACCTCTAACAAGGAGACAGACCCACCTCCACCTTTAACTCGAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GTAACACTGCAAATCGTTTAATGAAAACACTCTCAAAACTGAATTTATGTGTTGATAAAACAGAGAAAGGAGAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AGTAGTAGTCCTTCTCCATCAGCTGAAAAAGGAAAGATTCTAAATGTTTCAGTGATTGAAGAAAGTGGCAATAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AAACGATCAAAAGTCTCAAAAAATTATGAAGAAGAAAGAGTCATCTTCTATGTTGGCTACAGTTAAAGAAGAAG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCTCTGGTAGTTCAGCAGCTGTTACGGAGAATGCTGATAGTGATAGAATTTCTGATGAAGCAAATAGTAATTTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AACCAAGGAACTGAAAATGAACAAAGTAAAGAAACTCAAAGTCATGAGAGTAAACTGGGTGAGGAATCTGGTAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TGTAGAATCCAAATTAGATAGTGATTTCAACATATCCAGCCACAGTGAGCTGGAAAATAGCAGTGAGCTGAAAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GTGTCCATATATCCACACCTGAAAAAGAGCCTTGTGCACCACTGACAATACCATCCATAAGAAATATAATGACA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CAGCAGAAGGACTCCTTCGAAATGGAAGAGGTTCAAAGTACGGAGGGAGAAGCTCCTCATGTTCCAGCCACTTA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CCAGCTAGGTCTTACGAAGTCGAAAAGAGATCATCTGTTACGTACTGCAAGTCAGCATTCCGATAGCAGTGGTT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTGCTGAAGATTCTACAGACTGCCTATCCCTTAATCATCTTCAGGTTCAGGAGTCCTTGCAGGCTATGGGGAGT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AGTGCTGATAGTTGTGACAGTGAGACAACAGTTACGTCACTTGGTGAAGACCTTGCCACACCAACAGCACAAGA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CCAGCCTTATTTTAATGAATCAGAGGAGGAGTCTCTTGTCCCTCTTCAGAAGGGACTAGAGAAGGCAGCAGCAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TTGCAGACAAAAGAAAATCAGGTAGCCAGGATTTCCCTCAGTGCAACACCATTGAGAATACAGGAACTAAACAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TCCACCTGTAGTCCAGGGGATCATATCATTGAAATTACTGAAGTGGAAGAGGATTTGTTTCCAGCAGAGACAGT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AGAGCTACTGAGGGAAGCAAGTGCTGAAAGTGATGTGGGTAAAAGCAGTGAAAGTGAATTTACTCAGTATACCA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CACACCATATTCTGAAATCATTGGCTTCTATTGAAGCTAAATGCAGTGATATGAGCTCTGAAAATACAACTGGG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CCTCCCTCTTCCATGGACAGAGTTAATACAGCTTTGCAAAGAGCTCAAATGAAGGTTTGCAGTCTGTCTAATCA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AAGGATGGGGCGTAGCCTGCTAAAATCAAAAGATTTGTTAAAACAAAGGTACTTATTTGCAAAAGCTGGCTATC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CTCTAAGAAGGTCTCAGTCTTTACCAACCACCTTATTGAGCCCAGTAAGGGTTGTGTCCTCTGTCAATGTTCGA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TTATCTCCAGGAAAAGAGACCAGATGCAGCCCACCTTCCTTCACCTATAAGTACACACCTGAAGAGGAGCAGGA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ATTGGAAAAGCGGGTGATGGAACATGATGGTCAGTCTTTAGTTAAATCGACCATTTTCATCTCTCCATCATCTG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGAAGAAAGAAGAAGCCCCCCAGAGTGAGGCGCCGCGGGTGGAGGAATGCCATCATGGAAGGACTCCTACCTGT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TCACGGCTTGCTCCACCACCAATGTCTCAGTCTACCTGTTCCCTTCATTCCATCCACTCTGAGTGGCAAGAAAG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GCCCCTGTGTGAGCACACAAGAACTCTGAGCACTCACAGTGTTCCCAACATATCAGGGGCTACTTGTAGTGCCT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TCGCTTCCCCTTTCGGGTGTCCTTACTCACATAGACATGCCACCTACCCTTACCGAGTGTGCTCTGTGAATCCT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CCTTCAGCCATAGAAATGCAGTTGCGAAGAGTATTACATGATATTAGAAACTCACTGCAGAATCTTTCACAGTT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TTCTCCCTGTTGGCTTCTGTGGCACCACGTTCTCCTGGTTCTGCTCGTAGCTCTCTGACTAAGCTTTCCCCTTC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 ACCTACTGACCCTCGATGCTGTGCACAGAGTTAGTCTACTTCCACTGGACTCAAAGACTGGAACTACTCCAGAC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CAGAAAATAACAAATCAGTACCCTATGATGAGAGGACCTGATCCTGCTGCTGCTCCATATAGTACTCAGAAATC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 ATCTGTTCTACCTCTTTATGAAAATACTTTTCAGGAGCTCCAGGTAATGAGGCGGAGCCTGAATTTGTTTAGAA 3404
Query 1 -----------------------------------------------------------ATGACTGAGGAGGAG 15
|||||||||||||||
Sbjct 3405 CACAAATGATGGATTTAGAATTGGCAATGCTGCGTCAGCAAACCATGGTTTATCATCATATGACTGAGGAGGAG 3478
Query 16 AGGTTTGAAGTTGATCAGCTCCAGGGTTTGAGAAATTCAGTCCGAATGGAACTTCAGGACCTGGAACTGCAGCT 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479 AGGTTTGAAGTTGATCAGCTCCAGGGTTTGAGAAATTCAGTCCGAATGGAACTTCAGGACCTGGAACTGCAGCT 3552
Query 90 GGAGGAGCGCCTGCTGGGCCTGGAGGAGCAGCTTCGTGCTGTGCGCATGCCTTCACCCTTCCGCTCCTCCGCAC 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553 GGAGGAGCGCCTGCTGGGCCTGGAGGAGCAGCTTCGTGCTGTGCGCATGCCTTCACCCTTCCGCTCCTCCGCAC 3626
Query 164 TCATGGGAATGTGTGGCAGTAGAAGCGCTGATAACTTGTCATGCCCTTCTCCATTGAATGTAATGGAACCAGTC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627 TCATGGGAATGTGTGGCAGTAGAAGCGCTGATAACTTGTCATGCCCTTCTCCATTGAATGTAATGGAACCAGTC 3700
Query 238 ACTGAACTGATGCAGGAGCAGTCATACCTGAAGTCTGAATTGGGCCTGGGACTTGGAGAAATGGGATTTGAAAT 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 ACTGAACTGATGCAGGAGCAGTCATACCTGAAGTCTGAATTGGGCCTGGGACTTGGAGAAATGGGATTTGAAAT 3774
Query 312 TCCTCCTGGAGAAAGCTCAGAATCTGTTTTTTCCCAAGCAACATCAGAATCATCTTCTGTATGTTCTGGTCCCT 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 TCCTCCTGGAGAAAGCTCAGAATCTGTTTTTTCCCAAGCAACATCAGAATCATCTTCTGTATGTTCTGGTCCCT 3848
Query 386 CTCATGCTAACAGAAGAACTGGAGTACCTTCTACTGCCTCAGTGGGCAAATCCAAAACCCCATTAGTGGCAAGG 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849 CTCATGCTAACAGAAGAACTGGAGTACCTTCTACTGCCTCAGTGGGCAAATCCAAAACCCCATTAGTGGCAAGG 3922
Query 460 AAGAAAGTGTTCCGAGCATCGGTGGCTCTAACGCCAACAGCTCCTTCTAGAACAGGCTCTGTGCAGACACCTCC 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3923 AAGAAAGTGTTCCGAGCATCGGTGGCTCTAACGCCAACAGCTCCTTCTAGAACAGGCTCTGTGCAGACACCTCC 3996
Query 534 AGATTTGGAAAGTTCTGAGGAAGTTGATGCAGCTGAAGGAGCCCCAGAAGTTGTAGGACCTAAATCTGAAGTGG 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3997 AGATTTGGAAAGTTCTGAGGAAGTTGATGCAGCTGAAGGAGCCCCAGAAGTTGTAGGACCTAAATCTGAAGTGG 4070
Query 608 AAGAAGGGCATGGAAAACTCCCATCAATGCCAGCTGCTGAGGAAATGCATAAAAATGTGGAGCAAGATGAGTTG 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4071 AAGAAGGGCATGGAAAACTCCCATCAATGCCAGCTGCTGAGGAAATGCATAAAAATGTGGAGCAAGATGAGTTG 4144
Query 682 CAGCAAGTCATACGGGAGATTAAAGAGTCTATTGTTGGGGAAATCAGACGGGAAATTGTAAGTGGACTTTTGGC 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4145 CAGCAAGTCATACGGGAGATTAAAGAGTCTATTGTTGGGGAAATCAGACGGGAAATTGTAAGTGGACTTTTGGC 4218
Query 756 AGCAGTATCTTCAAGTAAAGCGTCTAATTCTAAGCAAGATTATCAT---------------------------- 801
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4219 AGCAGTATCTTCAAGTAAAGCGTCTAATTCTAAGCAAGATTATCATTAAACAGAAATTATAGGTTGGCATGGAT 4292
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4293 CCTATTAGCTGTGTAATACTGGAATTATCAATGATATGCACTGGTGGAGGTGTTATTTGTGCTTTAGAAGATAC 4366
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4367 TTGCTGTTGAGCTGGGCTACTGTATACAGTGTACAATGTGTATTTCTTCAACCATATATTTTAAAAAGACGTAC 4440
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4441 ATAGAAACTTAGGCACTTTGCTATTTCTTTTCTAAACTATCAAAAACTCTAGCAGTTTGAAAAGCCTAATATTT 4514
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4515 ATTTGTATGTCAGTATTTTTCATTTGATTCCCTATTAGAATTAATTTTAAAACTTGAAGACTTCCAGACTTATC 4588
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4589 CAACTTATAAATAACATATTTCTTCAGACTAACATCTTAAAACACTGACCTCTATGAGGTATTTACTGTGCAAT 4662
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4663 AACTGATTCATTTTTTTCAGAGCTTGAAGCATCCAATGATTTTTCCCTCCACTGCTGTTAATTAATGTCACTTC 4736
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4737 CAAGAAGAAAAACTGTTCTGTTGTAAAAAATATAATTGCTCTTAATTCTTGGGGAGGTTACTAATAGCAGTAGG 4810
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4811 ATAGAATTTTATGAGGTTACCTACAACTACTTAATGTACTTACACTGTAAGCCTTGTTGCTTTACCCAAGACAA 4884
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4885 ATGTAATTTTATCATTGCTTATGTAGTATTTTTCTTTTGGAAATGTGCCTTATGTTAAACACTATGTACTTTTA 4958
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4959 CTTTTTGCATTGTCCAGACTTCTTTATTAGATGGAGATGTTTCTTTTTCTGTCTTCTAGACTAAATAGAGTATC 5032
Query 802 -------------------------------------------------------------------------- 801
Sbjct 5033 ATCCAAATAATGGGGCCTATGACTTGAATGAATAGAAATGAATAAGCTGGTGTTTGTTTTTTCAAAATGGAAGT 5106
Query 802 -------------------------------------------------------------------------- 801
Sbjct 5107 AATTTAGATTTGTTCTCCTCATACATAAAATGATTTTAGTTCAGTTTTAACCAGTGAAAACTTTGTTTTTATGA 5180
Query 802 -------------------------------------------------------------------- 801
Sbjct 5181 AAAAAAAGGAAAATGGTTTCCCATTTGGTTTTATATGTGTTAAATAAATGTGTAAAGTAACCACCAAA 5248
