Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11159
Subject:
XR_002959326.1
Aligned Length:
4958
Identities:
801
Gaps:
4157

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GACAGCAAGGGCGGGGGTCCCTGCCGCCGCCTTGTCTCGCGCAGGGTCCGGCTGGGGTAGCGGAGCCCCCAGTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGGCCATGGACCGGCCCCTGTCGTCGTCGGCGGAGGCGGAGGAGGAACTGGAGTGGCAAGTGGCGAGTCGCAGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGGAAGGCCTGGGCCAAGTGCCGCAGCTCCTGGCAAGCGTCGGAGACGGAGGATCTGTCCACAGAAGCGACGAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCAGGACGAGGAGGAGGACGAGGAGGAGGACCTCCCCGGCGCGCAGCTGCCGGCAGCGGGGGGAAGAGGAAACG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGCCCAACGAGAAGATCGCGATATGGCTCAAGGACTGCCGGTGTGCTTGTGAGAAATGGAGGAAGTTTTGAAGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGATTTGTCATTGGGAGCTGAAGCCAACCACCTCCATGAAAGTGATGCTCAAATTGAAAACTGCAATAATATCT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGGCCAAAGAGAGAAGATTACAGTTTCATCAGAAAGGGAGAAGTATGAATTCCACTGGATCTGGGAAAAGTAGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GGGACAGTTTCAAGTGTTTCAGAATTGTTGGAACTTTATGAGGAAGATCCTGAAGAAATTCTTTATAATCTTGG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ATTTGGACGTGATGAACCAGATATTGCTTCTAAAATTCCTTCCAGATTTTTTAATTCATCATCCTTTGCCAAAG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GGATAGATATTAAAGTATTTTTGAGTGCTCAGATGCAACGGATGGAAGTAGAAAACCCAAATTATGCTTTAACA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AGCCGTTTTCGTCAAATTGAAGTGCTTACTACTGTGGCCAATGCGTTTTCTTCTTTATATTCTCAAGTCTCCGG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GACGCCCCTGCAGAGAATTGGAAGTATGTCCTCAGTGACCTCTAACAAGGAGACAGACCCACCTCCACCTTTAA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CTCGAAGTAACACTGCAAATCGTTTAATGAAAACACTCTCAAAACTGAATTTATGTGTTGATAAAACAGAGAAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGAGAAAGTAGTAGTCCTTCTCCATCAGCTGAAAAAGGAAAGATTCTAAATGTTTCAGTGATTGAAGAAAGTGG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CAATAAAAACGATCAAAAGTCTCAAAAAATTATGAAGAAGAAAGAGTCATCTTCTATGTTGGCTACAGTTAAAG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AAGAAGTCTCTGGTAGTTCAGCAGCTGTTACGGAGAATGCTGATAGTGATAGAATTTCTGATGAAGCAAATAGT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  AATTTTAACCAAGGAACTGAAAATGAACAAAGTAAAGAAACTCAAAGTCATGAGAGTAAACTGGGTGAGGAATC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TGGTATTGTAGAATCCAAATTAGATAGTGATTTCAACATATCCAGCCACAGTGAGCTGGAAAATAGCAGTGAGC  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TGAAAAGTGTCCATATATCCACACCTGAAAAAGAGCCTTGTGCACCACTGACAATACCATCCATAAGAAATATA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ATGACACAGCAGAAGGACTCCTTCGAAATGGAAGAGGTTCAAAGTACGGAGGGAGAAGCTCCTCATGTTCCAGC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CACTTACCAGCTAGGTCTTACGAAGTCGAAAAGAGATCATCTGTTACGTACTGCAAGTCAGCATTCCGATAGCA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GTGGTTTTGCTGAAGATTCTACAGACTGCCTATCCCTTAATCATCTTCAGGTTCAGGAGTCCTTGCAGGCTATG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  GGGAGTAGTGCTGATAGTTGTGACAGTGAGACAACAGTTACGTCACTTGGTGAAGACCTTGCCACACCAACAGC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  ACAAGACCAGCCTTATTTTAATGAATCAGAGGAGGAGTCTCTTGTCCCTCTTCAGAAGGGACTAGAGAAGGCAG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CAGCAGTTGCAGACAAAAGAAAATCAGGTAGCCAGGATTTCCCTCAGTGCAACACCATTGAGAATACAGGAACT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AAACAGTCCACCTGTAGTCCAGGGGATCATATCATTGAAATTACTGAAGTGGAAGAGGATTTGTTTCCAGCAGA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GACAGTAGAGCTACTGAGGGAAGCAAGTGCTGAAAGTGATGTGGGTAAAAGCAGTGAAAGTGAATTTACTCAGT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  ATACCACACACCATATTCTGAAATCATTGGCTTCTATTGAAGCTAAATGCAGTGATATGAGCTCTGAAAATACA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ACTGGGCCTCCCTCTTCCATGGACAGAGTTAATACAGCTTTGCAAAGAGCTCAAATGAAGGTTTGCAGTCTGTC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TAATCAAAGGATGGGGCGTAGCCTGCTAAAATCAAAAGATTTGTTAAAACAAAGGTACTTATTTGCAAAAGCTG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GCTATCCTCTAAGAAGGTCTCAGTCTTTACCAACCACCTTATTGAGCCCAGTAAGGGTTGTGTCCTCTGTCAAT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GTTCGATTATCTCCAGGAAAAGAGACCAGATGCAGCCCACCTTCCTTCACCTATAAGTACACACCTGAAGAGGA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  GCAGGAATTGGAAAAGCGGGTGATGGAACATGATGGTCAGTCTTTAGTTAAATCGACCATTTTCATCTCTCCAT  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CATCTGTGAAGAAAGAAGAAGCCCCCCAGAGTGAGGCGCCGCGGGTGGAGGAATGCCATCATGGAAGGACTCCT  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  ACCTGTTCACGGCTTGCTCCACCACCAATGTCTCAGTCTACCTGTTCCCTTCATTCCATCCACTCTGAGTGGCA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AGAAAGGCCCCTGTGTGAGCACACAAGAACTCTGAGCACTCACAGTGTTCCCAACATATCAGGGGCTACTTGTA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  GTGCCTTCGCTTCCCCTTTCGGGTGTCCTTACTCACATAGACATGCCACCTACCCTTACCGAGTGTGCTCTGTG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  AATCCTCCTTCAGCCATAGAAATGCAGTTGCGAAGAGTATTACATGATATTAGAAACTCACTGCAGAATCTTTC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ACAGTTTTCTCCCTGTTGGCTTCTGTGGCACCACGTTCTCCTGGTTCTGCTCGTAGCTCTCTGACTAAGCTTTC  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  CCCTTCACCTACTGACCCTCGATGCTGTGCACAGAGTTAGTCTACTTCCACTGGACTCAAAGACTGGAACTACT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  CCAGACCAGAAAATAACAAATCAGTACCCTATGATGAGAGGACCTGATCCTGCTGCTGCTCCATATAGTACTCA  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  GAAATCATCTGTTCTACCTCTTTATGAAAATACTTTTCAGGAGCTCCAGGTAATGAGGCGGAGCCTGAATTTGT  3108

Query    1  -----------------------------------------------------------------ATGACTGAG  9
                                                                             |||||||||
Sbjct 3109  TTAGAACACAAATGATGGATTTAGAATTGGCAATGCTGCGTCAGCAAACCATGGTTTATCATCATATGACTGAG  3182

Query   10  GAGGAGAGGTTTGAAGTTGATCAGCTCCAGGGTTTGAGAAATTCAGTCCGAATGGAACTTCAGGACCTGGAACT  83
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183  GAGGAGAGGTTTGAAGTTGATCAGCTCCAGGGTTTGAGAAATTCAGTCCGAATGGAACTTCAGGACCTGGAACT  3256

Query   84  GCAGCTGGAGGAGCGCCTGCTGGGCCTGGAGGAGCAGCTTCGTGCTGTGCGCATGCCTTCACCCTTCCGCTCCT  157
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257  GCAGCTGGAGGAGCGCCTGCTGGGCCTGGAGGAGCAGCTTCGTGCTGTGCGCATGCCTTCACCCTTCCGCTCCT  3330

Query  158  CCGCACTCATGGGAATGTGTGGCAGTAGAAGCGCTGATAACTTGTCATGCCCTTCTCCATTGAATGTAATGGAA  231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331  CCGCACTCATGGGAATGTGTGGCAGTAGAAGCGCTGATAACTTGTCATGCCCTTCTCCATTGAATGTAATGGAA  3404

Query  232  CCAGTCACTGAACTGATGCAGGAGCAGTCATACCTGAAGTCTGAATTGGGCCTGGGACTTGGAGAAATGGGATT  305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405  CCAGTCACTGAACTGATGCAGGAGCAGTCATACCTGAAGTCTGAATTGGGCCTGGGACTTGGAGAAATGGGATT  3478

Query  306  TGAAATTCCTCCTGGAGAAAGCTCAGAATCTGTTTTTTCCCAAGCAACATCAGAATCATCTTCTGTATGTTCTG  379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479  TGAAATTCCTCCTGGAGAAAGCTCAGAATCTGTTTTTTCCCAAGCAACATCAGAATCATCTTCTGTATGTTCTG  3552

Query  380  GTCCCTCTCATGCTAACAGAAGAACTGGAGTACCTTCTACTGCCTCAGTGGGCAAATCCAAAACCCCATTAGTG  453
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553  GTCCCTCTCATGCTAACAGAAGAACTGGAGTACCTTCTACTGCCTCAGTGGGCAAATCCAAAACCCCATTAGTG  3626

Query  454  GCAAGGAAGAAAGTGTTCCGAGCATCGGTGGCTCTAACGCCAACAGCTCCTTCTAGAACAGGCTCTGTGCAGAC  527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627  GCAAGGAAGAAAGTGTTCCGAGCATCGGTGGCTCTAACGCCAACAGCTCCTTCTAGAACAGGCTCTGTGCAGAC  3700

Query  528  ACCTCCAGATTTGGAAAGTTCTGAGGAAGTTGATGCAGCTGAAGGAGCCCCAGAAGTTGTAGGACCTAAATCTG  601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701  ACCTCCAGATTTGGAAAGTTCTGAGGAAGTTGATGCAGCTGAAGGAGCCCCAGAAGTTGTAGGACCTAAATCTG  3774

Query  602  AAGTGGAAGAAGGGCATGGAAAACTCCCATCAATGCCAGCTGCTGAGGAAATGCATAAAAATGTGGAGCAAGAT  675
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775  AAGTGGAAGAAGGGCATGGAAAACTCCCATCAATGCCAGCTGCTGAGGAAATGCATAAAAATGTGGAGCAAGAT  3848

Query  676  GAGTTGCAGCAAGTCATACGGGAGATTAAAGAGTCTATTGTTGGGGAAATCAGACGGGAAATTGTAAGTGGACT  749
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849  GAGTTGCAGCAAGTCATACGGGAGATTAAAGAGTCTATTGTTGGGGAAATCAGACGGGAAATTGTAAGTGGACT  3922

Query  750  TTTGGCAGCAGTATCTTCAAGTAAAGCGTCTAATTCTAAGCAAGATTATCAT----------------------  801
            ||||||||||||||||||||||||||||||||||||||||||||||||||||                      
Sbjct 3923  TTTGGCAGCAGTATCTTCAAGTAAAGCGTCTAATTCTAAGCAAGATTATCATTAAACAGAAATTATAGGTTGGC  3996

Query  802  --------------------------------------------------------------------------  801
                                                                                      
Sbjct 3997  ATGGATCCTATTAGCTGTGTAATACTGGAATTATCAATGATATGCACTGGTGGAGGTGTTATTTGTGCTTTAGA  4070

Query  802  --------------------------------------------------------------------------  801
                                                                                      
Sbjct 4071  AGATACTTGCTGTTGAGCTGGGCTACTGTATACAGTGTACAATGTGTATTTCTTCAACCATATATTTTAAAAAG  4144

Query  802  --------------------------------------------------------------------------  801
                                                                                      
Sbjct 4145  ACGTACATAGAAACTTAGGCACTTTGCTATTTCTTTTCTAAACTATCAAAAACTCTAGCAGTTTGAAAAGCCTA  4218

Query  802  --------------------------------------------------------------------------  801
                                                                                      
Sbjct 4219  ATATTTATTTGTATGTCAGTATTTTTCATTTGATTCCCTATTAGAATTAATTTTAAAACTTGAAGACTTCCAGA  4292

Query  802  --------------------------------------------------------------------------  801
                                                                                      
Sbjct 4293  CTTATCCAACTTATAAATAACATATTTCTTCAGACTAACATCTTAAAACACTGACCTCTATGAGGTATTTACTG  4366

Query  802  --------------------------------------------------------------------------  801
                                                                                      
Sbjct 4367  TGCAATAACTGATTCATTTTTTTCAGAGCTTGAAGCATCCAATGATTTTTCCCTCCACTGCTGTTAATTAATGT  4440

Query  802  --------------------------------------------------------------------------  801
                                                                                      
Sbjct 4441  CACTTCCAAGAAGAAAAACTGTTCTGTTGTAAAAAATATAATTGCTCTTAATTCTTGGGGAGGTTACTAATAGC  4514

Query  802  --------------------------------------------------------------------------  801
                                                                                      
Sbjct 4515  AGTAGGATAGAATTTTATGAGGTTACCTACAACTACTTAATGTACTTACACTGTAAGCCTTGTTGCTTTACCCA  4588

Query  802  --------------------------------------------------------------------------  801
                                                                                      
Sbjct 4589  AGACAAATGTAATTTTATCATTGCTTATGTAGTATTTTTCTTTTGGAAATGTGCCTTATGTTAAACACTATGTA  4662

Query  802  --------------------------------------------------------------------------  801
                                                                                      
Sbjct 4663  CTTTTACTTTTTGCATTGTCCAGACTTCTTTATTAGATGGAGATGTTTCTTTTTCTGTCTTCTAGACTAAATAG  4736

Query  802  --------------------------------------------------------------------------  801
                                                                                      
Sbjct 4737  AGTATCATCCAAATAATGGGGCCTATGACTTGAATGAATAGAAATGAATAAGCTGGTGTTTGTTTTTTCAAAAT  4810

Query  802  --------------------------------------------------------------------------  801
                                                                                      
Sbjct 4811  GGAAGTAATTTAGATTTGTTCTCCTCATACATAAAATGATTTTAGTTCAGTTTTAACCAGTGAAAACTTTGTTT  4884

Query  802  --------------------------------------------------------------------------  801
                                                                                      
Sbjct 4885  TTATGAAAAAAAAGGAAAATGGTTTCCCATTTGGTTTTATATGTGTTAAATAAATGTGTAAAGTAACCACCAAA  4958

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