Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11159
- Subject:
- XR_002959326.1
- Aligned Length:
- 4958
- Identities:
- 801
- Gaps:
- 4157
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GACAGCAAGGGCGGGGGTCCCTGCCGCCGCCTTGTCTCGCGCAGGGTCCGGCTGGGGTAGCGGAGCCCCCAGTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGGCCATGGACCGGCCCCTGTCGTCGTCGGCGGAGGCGGAGGAGGAACTGGAGTGGCAAGTGGCGAGTCGCAGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGGAAGGCCTGGGCCAAGTGCCGCAGCTCCTGGCAAGCGTCGGAGACGGAGGATCTGTCCACAGAAGCGACGAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCAGGACGAGGAGGAGGACGAGGAGGAGGACCTCCCCGGCGCGCAGCTGCCGGCAGCGGGGGGAAGAGGAAACG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGCCCAACGAGAAGATCGCGATATGGCTCAAGGACTGCCGGTGTGCTTGTGAGAAATGGAGGAAGTTTTGAAGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGATTTGTCATTGGGAGCTGAAGCCAACCACCTCCATGAAAGTGATGCTCAAATTGAAAACTGCAATAATATCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGGCCAAAGAGAGAAGATTACAGTTTCATCAGAAAGGGAGAAGTATGAATTCCACTGGATCTGGGAAAAGTAGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGGACAGTTTCAAGTGTTTCAGAATTGTTGGAACTTTATGAGGAAGATCCTGAAGAAATTCTTTATAATCTTGG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ATTTGGACGTGATGAACCAGATATTGCTTCTAAAATTCCTTCCAGATTTTTTAATTCATCATCCTTTGCCAAAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GGATAGATATTAAAGTATTTTTGAGTGCTCAGATGCAACGGATGGAAGTAGAAAACCCAAATTATGCTTTAACA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGCCGTTTTCGTCAAATTGAAGTGCTTACTACTGTGGCCAATGCGTTTTCTTCTTTATATTCTCAAGTCTCCGG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GACGCCCCTGCAGAGAATTGGAAGTATGTCCTCAGTGACCTCTAACAAGGAGACAGACCCACCTCCACCTTTAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTCGAAGTAACACTGCAAATCGTTTAATGAAAACACTCTCAAAACTGAATTTATGTGTTGATAAAACAGAGAAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGAGAAAGTAGTAGTCCTTCTCCATCAGCTGAAAAAGGAAAGATTCTAAATGTTTCAGTGATTGAAGAAAGTGG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CAATAAAAACGATCAAAAGTCTCAAAAAATTATGAAGAAGAAAGAGTCATCTTCTATGTTGGCTACAGTTAAAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAGAAGTCTCTGGTAGTTCAGCAGCTGTTACGGAGAATGCTGATAGTGATAGAATTTCTGATGAAGCAAATAGT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AATTTTAACCAAGGAACTGAAAATGAACAAAGTAAAGAAACTCAAAGTCATGAGAGTAAACTGGGTGAGGAATC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGGTATTGTAGAATCCAAATTAGATAGTGATTTCAACATATCCAGCCACAGTGAGCTGGAAAATAGCAGTGAGC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TGAAAAGTGTCCATATATCCACACCTGAAAAAGAGCCTTGTGCACCACTGACAATACCATCCATAAGAAATATA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ATGACACAGCAGAAGGACTCCTTCGAAATGGAAGAGGTTCAAAGTACGGAGGGAGAAGCTCCTCATGTTCCAGC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CACTTACCAGCTAGGTCTTACGAAGTCGAAAAGAGATCATCTGTTACGTACTGCAAGTCAGCATTCCGATAGCA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GTGGTTTTGCTGAAGATTCTACAGACTGCCTATCCCTTAATCATCTTCAGGTTCAGGAGTCCTTGCAGGCTATG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GGGAGTAGTGCTGATAGTTGTGACAGTGAGACAACAGTTACGTCACTTGGTGAAGACCTTGCCACACCAACAGC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ACAAGACCAGCCTTATTTTAATGAATCAGAGGAGGAGTCTCTTGTCCCTCTTCAGAAGGGACTAGAGAAGGCAG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CAGCAGTTGCAGACAAAAGAAAATCAGGTAGCCAGGATTTCCCTCAGTGCAACACCATTGAGAATACAGGAACT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AAACAGTCCACCTGTAGTCCAGGGGATCATATCATTGAAATTACTGAAGTGGAAGAGGATTTGTTTCCAGCAGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GACAGTAGAGCTACTGAGGGAAGCAAGTGCTGAAAGTGATGTGGGTAAAAGCAGTGAAAGTGAATTTACTCAGT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATACCACACACCATATTCTGAAATCATTGGCTTCTATTGAAGCTAAATGCAGTGATATGAGCTCTGAAAATACA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ACTGGGCCTCCCTCTTCCATGGACAGAGTTAATACAGCTTTGCAAAGAGCTCAAATGAAGGTTTGCAGTCTGTC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TAATCAAAGGATGGGGCGTAGCCTGCTAAAATCAAAAGATTTGTTAAAACAAAGGTACTTATTTGCAAAAGCTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GCTATCCTCTAAGAAGGTCTCAGTCTTTACCAACCACCTTATTGAGCCCAGTAAGGGTTGTGTCCTCTGTCAAT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GTTCGATTATCTCCAGGAAAAGAGACCAGATGCAGCCCACCTTCCTTCACCTATAAGTACACACCTGAAGAGGA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GCAGGAATTGGAAAAGCGGGTGATGGAACATGATGGTCAGTCTTTAGTTAAATCGACCATTTTCATCTCTCCAT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CATCTGTGAAGAAAGAAGAAGCCCCCCAGAGTGAGGCGCCGCGGGTGGAGGAATGCCATCATGGAAGGACTCCT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ACCTGTTCACGGCTTGCTCCACCACCAATGTCTCAGTCTACCTGTTCCCTTCATTCCATCCACTCTGAGTGGCA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AGAAAGGCCCCTGTGTGAGCACACAAGAACTCTGAGCACTCACAGTGTTCCCAACATATCAGGGGCTACTTGTA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GTGCCTTCGCTTCCCCTTTCGGGTGTCCTTACTCACATAGACATGCCACCTACCCTTACCGAGTGTGCTCTGTG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AATCCTCCTTCAGCCATAGAAATGCAGTTGCGAAGAGTATTACATGATATTAGAAACTCACTGCAGAATCTTTC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ACAGTTTTCTCCCTGTTGGCTTCTGTGGCACCACGTTCTCCTGGTTCTGCTCGTAGCTCTCTGACTAAGCTTTC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CCCTTCACCTACTGACCCTCGATGCTGTGCACAGAGTTAGTCTACTTCCACTGGACTCAAAGACTGGAACTACT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CCAGACCAGAAAATAACAAATCAGTACCCTATGATGAGAGGACCTGATCCTGCTGCTGCTCCATATAGTACTCA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GAAATCATCTGTTCTACCTCTTTATGAAAATACTTTTCAGGAGCTCCAGGTAATGAGGCGGAGCCTGAATTTGT 3108
Query 1 -----------------------------------------------------------------ATGACTGAG 9
|||||||||
Sbjct 3109 TTAGAACACAAATGATGGATTTAGAATTGGCAATGCTGCGTCAGCAAACCATGGTTTATCATCATATGACTGAG 3182
Query 10 GAGGAGAGGTTTGAAGTTGATCAGCTCCAGGGTTTGAGAAATTCAGTCCGAATGGAACTTCAGGACCTGGAACT 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183 GAGGAGAGGTTTGAAGTTGATCAGCTCCAGGGTTTGAGAAATTCAGTCCGAATGGAACTTCAGGACCTGGAACT 3256
Query 84 GCAGCTGGAGGAGCGCCTGCTGGGCCTGGAGGAGCAGCTTCGTGCTGTGCGCATGCCTTCACCCTTCCGCTCCT 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257 GCAGCTGGAGGAGCGCCTGCTGGGCCTGGAGGAGCAGCTTCGTGCTGTGCGCATGCCTTCACCCTTCCGCTCCT 3330
Query 158 CCGCACTCATGGGAATGTGTGGCAGTAGAAGCGCTGATAACTTGTCATGCCCTTCTCCATTGAATGTAATGGAA 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 CCGCACTCATGGGAATGTGTGGCAGTAGAAGCGCTGATAACTTGTCATGCCCTTCTCCATTGAATGTAATGGAA 3404
Query 232 CCAGTCACTGAACTGATGCAGGAGCAGTCATACCTGAAGTCTGAATTGGGCCTGGGACTTGGAGAAATGGGATT 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405 CCAGTCACTGAACTGATGCAGGAGCAGTCATACCTGAAGTCTGAATTGGGCCTGGGACTTGGAGAAATGGGATT 3478
Query 306 TGAAATTCCTCCTGGAGAAAGCTCAGAATCTGTTTTTTCCCAAGCAACATCAGAATCATCTTCTGTATGTTCTG 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479 TGAAATTCCTCCTGGAGAAAGCTCAGAATCTGTTTTTTCCCAAGCAACATCAGAATCATCTTCTGTATGTTCTG 3552
Query 380 GTCCCTCTCATGCTAACAGAAGAACTGGAGTACCTTCTACTGCCTCAGTGGGCAAATCCAAAACCCCATTAGTG 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553 GTCCCTCTCATGCTAACAGAAGAACTGGAGTACCTTCTACTGCCTCAGTGGGCAAATCCAAAACCCCATTAGTG 3626
Query 454 GCAAGGAAGAAAGTGTTCCGAGCATCGGTGGCTCTAACGCCAACAGCTCCTTCTAGAACAGGCTCTGTGCAGAC 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627 GCAAGGAAGAAAGTGTTCCGAGCATCGGTGGCTCTAACGCCAACAGCTCCTTCTAGAACAGGCTCTGTGCAGAC 3700
Query 528 ACCTCCAGATTTGGAAAGTTCTGAGGAAGTTGATGCAGCTGAAGGAGCCCCAGAAGTTGTAGGACCTAAATCTG 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 ACCTCCAGATTTGGAAAGTTCTGAGGAAGTTGATGCAGCTGAAGGAGCCCCAGAAGTTGTAGGACCTAAATCTG 3774
Query 602 AAGTGGAAGAAGGGCATGGAAAACTCCCATCAATGCCAGCTGCTGAGGAAATGCATAAAAATGTGGAGCAAGAT 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 AAGTGGAAGAAGGGCATGGAAAACTCCCATCAATGCCAGCTGCTGAGGAAATGCATAAAAATGTGGAGCAAGAT 3848
Query 676 GAGTTGCAGCAAGTCATACGGGAGATTAAAGAGTCTATTGTTGGGGAAATCAGACGGGAAATTGTAAGTGGACT 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849 GAGTTGCAGCAAGTCATACGGGAGATTAAAGAGTCTATTGTTGGGGAAATCAGACGGGAAATTGTAAGTGGACT 3922
Query 750 TTTGGCAGCAGTATCTTCAAGTAAAGCGTCTAATTCTAAGCAAGATTATCAT---------------------- 801
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3923 TTTGGCAGCAGTATCTTCAAGTAAAGCGTCTAATTCTAAGCAAGATTATCATTAAACAGAAATTATAGGTTGGC 3996
Query 802 -------------------------------------------------------------------------- 801
Sbjct 3997 ATGGATCCTATTAGCTGTGTAATACTGGAATTATCAATGATATGCACTGGTGGAGGTGTTATTTGTGCTTTAGA 4070
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4071 AGATACTTGCTGTTGAGCTGGGCTACTGTATACAGTGTACAATGTGTATTTCTTCAACCATATATTTTAAAAAG 4144
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4145 ACGTACATAGAAACTTAGGCACTTTGCTATTTCTTTTCTAAACTATCAAAAACTCTAGCAGTTTGAAAAGCCTA 4218
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4219 ATATTTATTTGTATGTCAGTATTTTTCATTTGATTCCCTATTAGAATTAATTTTAAAACTTGAAGACTTCCAGA 4292
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4293 CTTATCCAACTTATAAATAACATATTTCTTCAGACTAACATCTTAAAACACTGACCTCTATGAGGTATTTACTG 4366
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4367 TGCAATAACTGATTCATTTTTTTCAGAGCTTGAAGCATCCAATGATTTTTCCCTCCACTGCTGTTAATTAATGT 4440
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4441 CACTTCCAAGAAGAAAAACTGTTCTGTTGTAAAAAATATAATTGCTCTTAATTCTTGGGGAGGTTACTAATAGC 4514
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4515 AGTAGGATAGAATTTTATGAGGTTACCTACAACTACTTAATGTACTTACACTGTAAGCCTTGTTGCTTTACCCA 4588
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4589 AGACAAATGTAATTTTATCATTGCTTATGTAGTATTTTTCTTTTGGAAATGTGCCTTATGTTAAACACTATGTA 4662
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4663 CTTTTACTTTTTGCATTGTCCAGACTTCTTTATTAGATGGAGATGTTTCTTTTTCTGTCTTCTAGACTAAATAG 4736
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4737 AGTATCATCCAAATAATGGGGCCTATGACTTGAATGAATAGAAATGAATAAGCTGGTGTTTGTTTTTTCAAAAT 4810
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4811 GGAAGTAATTTAGATTTGTTCTCCTCATACATAAAATGATTTTAGTTCAGTTTTAACCAGTGAAAACTTTGTTT 4884
Query 802 -------------------------------------------------------------------------- 801
Sbjct 4885 TTATGAAAAAAAAGGAAAATGGTTTCCCATTTGGTTTTATATGTGTTAAATAAATGTGTAAAGTAACCACCAAA 4958
