Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11214
- Subject:
- NM_001258261.1
- Aligned Length:
- 4202
- Identities:
- 397
- Gaps:
- 3766
Alignment
Query 1 ATGAAATCGTGCGCAGTGTCGCTCACTACCGCCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGG 74
||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAATCCTGCGCAGTGTCGCTCACTACCGCCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGG 74
Query 75 AAAAGCGAGCCGCGAGAGTGAAGAGGAGTCTGTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGG 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AAAAGCGAGCCGCGAGAGTGAAGAGGAGTCTGTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGG 148
Query 149 ACAGCCGTCTCTTCGGGTTCGTGAGGCTTCATGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGG----- 217
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ACAGCCGTCTCTTCGGGTTCGTGAGGCTTCATGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGGCTGTT 222
Query 218 ----------------------TAAAAGC--AACCAGACGCAAAG------------TCTTT---------GGT 246
||||||| | |.|.|||| ||||| |||
Sbjct 223 CGCTGCTACGAATCTTTAATCTTAAAAGCTGA-----AGGAAAAGTGGAGTCTGACTTCTTTTGCCAATTAGGT 291
Query 247 CCGCACTT------------------------------------TGC------------------TCTACCAAG 266
||||| ||| |.||| ||
Sbjct 292 ---CACTTCAACCTCTTGTTGGAAGATTATTCAAAAGCATTATCTGCATATCAGAGATATTACAGTTTAC--AG 360
Query 267 GC----------------CCCGCGTTCCT-TACCGCC----------------------CA------------- 288
|| .|.|||||..| ||..||| ||
Sbjct 361 GCTGACTACTGGAAGAATGCTGCGTTTTTATATGGCCTTGGTTTGGTCTACTTCTACTACAATGCATTTCATTG 434
Query 289 -GCCAGTA------------------TTTATTTTG------GCTCTGCTCCATGGCCAAGG------------- 324
||.|.|| |||||.||| |||.|..||.| |||||||
Sbjct 435 GGCAATTAAAGCATTTCAAGATGTCCTTTATGTTGACCCCAGCTTTTGTCGA--GCCAAGGAAATTCATTTACG 506
Query 325 ----GGTCGGA-----AAAGTG------------------------------TTTC---TTGCCT---TTG-CT 352
||.|..| |||||| |||| |.|||| ||| ||
Sbjct 507 ACTTGGGCTCATGTTCAAAGTGAACACAGACTACAAGTCTAGTTTAAAGCATTTTCAGTTAGCCTTGATTGACT 580
Query 353 G---TCCCCGTACT----------CTGGAAT---ACTTC-----GCCCCTTGCT-------CCAGA------CT 392
| |||..||||| |||.||| |.||| ||||.||..| ||||| .|
Sbjct 581 GTAATCCATGTACTTTGTCCAATGCTGAAATTCAATTTCATATTGCCCATTTGTATGAAACCCAGAGGAAGTAT 654
Query 393 CCCTTCTACTCTG---AGGA--------AAAAAAAAATCGGACGCTTTGG--GACCGGGCTAAACCGGGT--CT 451
| |.|||| |||| ||.|| ||||.| |||.| .||||| | ||
Sbjct 655 C------ATTCTGCAAAGGAGGCATATGAACAA-----------CTTTTGCAGACAG---AAAACC---TTCCT 705
Query 452 ACACCA-------CA-------TGC--CTGTTACTT-------------------------------------- 471
.|||.| || ||| |.||||..|
Sbjct 706 GCACAAGTAAAAGCAACTGTATTGCAACAGTTAGGTTGGATGCATCATAATATGGATCTAGTAGGAGACAAAGC 779
Query 472 -------------------------------------------------------------------------- 471
Sbjct 780 CACAAAGGAAAGCTATGCTATTCAGTATCTCCAAAAGTCTTTGGAGGCAGATCCTAATTCTGGCCAATCGTGGT 853
Query 472 -------------------------------------------------------------------------- 471
Sbjct 854 ATTTTCTTGGAAGTGTGTTGTATCAGCAGCAAAATCAGCCTATGGATGCTTTACAGGCATATATTTGTGCTGTA 927
Query 472 -------------------------------------------------------------------------- 471
Sbjct 928 CAATTGGACCATGGGCATGCCGCAGCCTGGATGGACCTAGGTACTCTCTATGAATCCTGCAATCAACCTCAAGA 1001
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1002 TGCCATTAAATGCTACCTAAATGCAGCTAGAAGCAAACGTTGTAGTAATACCTCTACGCTTGCTGCAAGAATTA 1075
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1076 AATTTCTACAGGCTCAGTTGTGTAACCTTCCACAAAGTAGTCTACAGAATAAAACTAAATTACTTCCTAGTATT 1149
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1150 GAGGAGGCATGGAGCCTACCAATCCCCGCAGAGCTTACCTCCAGGCAGGGTGCCATGAACACAGCACAGCAGCA 1223
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1224 ATCCTTGTCACTACACATGATTACTTCTAGCCAAGTAGAAGGCCTGTCCAGTCCTGCCAAGAAGAAAAGAACAT 1297
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1298 CTAGTCCAACAAAGAATGGTTCTGATAACTGGAATGGTGGCCAGAGTCTTTCACATCATCCAGTACAGCAAGTT 1371
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1372 TATTCGTTGTGTTTGACACCACAGAAATTACAGCACTTGGAACAACTGCGAGCAAATAGAGATAATTTAAATCC 1445
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1446 AGCACAGAAGCATCAGCTGGAACAGTTAGAAAGTCAGTTTGTCTTAATGCAGCAAATGAGACACAAAGAAGTTG 1519
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1520 CTCAGGTACGAACTACTGGAATTCATAACGGGGCCATAACTGATTCATCACTGCCTACAAACTCTGTCTCTAAT 1593
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1594 CGACAACCACATGGTGCTCTGACCAGAGTATCTAGCGTCTCTCAGCCTGGAGTTCGCCCTGCTTGTGTTGAAAA 1667
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1668 ACTTTTGTCCAGTGGAGCTTTTTCTGCAGGCTGTATTCCTTGTGGCACATCAAAAATTCTAGGAAGTACAGACA 1741
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1742 CTATCTTGCTAGGCAGTAATTGTATAGCAGGAAGTGAAAGTAATGGAAATGTGCCTTACCTGCAGCAAAATACA 1815
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1816 CACACTCTACCTCATAATCATACAGACCTGAACAGCAGCACAGAAGAGCCATGGAGAAAACAGCTATCTAACTC 1889
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1890 CGCTCAGGGGCTTCATAAAAGTCAGAGTTCATGTTTGTCAGGACCTAATGAAGAACAACCTCTGTTTTCCACTG 1963
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1964 GGTCAGCCCAGTATCACCAGGCAACTAGCACTGGTATTAAGAAGGCGAATGAACATCTCACTCTGCCTAGTAAT 2037
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2038 TCAGTACCACAGGGGGATGCTGACAGTCACCTCTCCTGTCATACTGCTACCTCAGGTGGACAACAAGGCATTAT 2111
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2112 GTTTACCAAAGAGAGCAAGCCTTCAAAAAATAGATCCTTGGTGCCTGAAACAAGCAGGCATACTGGAGACACAT 2185
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2186 CTAATGGCTGTGCTGATGTCAAGGGACTTTCTAATCATGTTCATCAGTTGATAGCAGATGCTGTTTCCAGTCCT 2259
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2260 AACCATGGAGATTCACCAAATTTATTAATTGCAGACAATCCTCAGCTCTCTGCTTTGTTGATTGGAAAAGCCAA 2333
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2334 TGGCAATGTGGGTACTGGAACCTGTGACAAAGTGAATAATATTCACCCAGCTGTTCATACAAAGACTGATCATT 2407
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2408 CTGTTGCCTCTTCACCCTCTTCAGCCATTTCCACAGCAACACCTTCTCCTAAATCCACTGAGCAGAGAAGCATA 2481
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2482 AACAGTGTTACCAGCCTTAACAGTCCTCACAGTGGATTACACACAGTCAATGGAGAGGGGCTGGGGAAGTCACA 2555
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2556 GAGCTCTACAAAAGTAGACCTGCCTTTAGCTAGCCACAGATCTACTTCTCAGATCTTACCATCAATGTCAGTGT 2629
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2630 CTATATGCCCCAGTTCAACAGAAGTTCTGAAAGCATGCAGGAATCCAGGTAAAAATGGCTTGTCTAATAGCTGC 2703
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2704 ATTTTGTTAGATAAATGTCCACCTCCAAGACCACCAACTTCACCATACCCACCCTTGCCAAAGGACAAGTTGAA 2777
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2778 TCCACCCACACCTAGTATTTACTTGGAAAATAAACGTGATGCTTTCTTTCCTCCATTACATCAATTTTGTACAA 2851
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2852 ATCCAAAAAACCCTGTTACAGTAATACGTGGCCTTGCTGGAGCTCTTAAATTAGATCTTGGACTTTTCTCTACC 2925
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2926 AAAACTTTGGTAGAAGCTAACAATGAACATATGGTAGAAGTGAGGACACAGTTGCTGCAACCAGCAGATGAAAA 2999
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3000 CTGGGATCCCACTGGAACAAAGAAAATCTGGCGTTGTGAAAGCAATAGATCTCATACTACAATTGCCAAATACG 3073
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3074 CACAATACCAGGCTTCCTCCTTCCAGGAATCATTGAGAGAAGAAAATGAGAAAAGAACACAACACAAAGATCAT 3147
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3148 TCAGATAACGAATCCACATCTTCAGAGAATTCTGGAAGGAGAAGGAAAGGACCTTTTAAAACCATAAAATTTGG 3221
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3222 GACCAACATTGACCTCTCTGATAACAAAAAGTGGAAGTTGCAGTTACATGAACTGACTAAACTTCCTGCTTTTG 3295
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3296 CGCGTGTGGTGTCAGCAGGAAATCTTCTAACCCATGTTGGGCATACCATTCTGGGCATGAATACAGTACAACTG 3369
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3370 TATATGAAAGTTCCAGGGAGTCGGACACCAGGTCACCAAGAAAATAACAACTTCTGCTCTGTTAACATAAATAT 3443
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3444 TGGTCCAGGAGATTGTGAATGGTTTGTTGTACCTGAAGATTATTGGGGTGTTCTGAATGACTTCTGTGAAAAAA 3517
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3518 ATAATTTGAATTTTTTAATGAGTTCTTGGTGGCCCAACCTTGAAGATCTTTATGAAGCAAATGTCCCTGTGTAT 3591
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3592 AGATTTATTCAGCGACCTGGAGATTTGGTCTGGATAAATGCAGGCACTGTGCATTGGGTTCAAGCTGTTGGCTG 3665
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3666 GTGCAATAACATTGCCTGGAATGTTGGTCCACTTACAGCCTGCCAGTATAAATTGGCAGTGGAACGGTATGAAT 3739
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3740 GGAACAAATTGAAAAGTGTGAAGTCACCAGTACCCATGGTGCATCTTTCCTGGAATATGGCACGAAATATCAAA 3813
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3814 GTCTCAGATCCAAAGCTTTTTGAAATGATTAAGTATTGTCTTTTGAAAATTCTGAAGCAATATCAGACATTGAG 3887
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3888 AGAAGCTCTTGTTGCAGCAGGAAAAGAGGTTATATGGCATGGGCGGACAAATGATGAACCAGCTCATTACTGTA 3961
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3962 GCATTTGTGAGGTGGAGGTTTTTAATCTGCTTTTTGTCACTAATGAAAGCAATACTCAAAAAACCTACATAGTA 4035
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4036 CATTGCCATGATTGTGCACGAAAAACAAGCAAAAGTTTGGAAAATTTTGTGGTGCTCGAACAGTACAAAATGGA 4109
Query 472 ---------------------------------------------------------- 471
Sbjct 4110 GGACCTAATCCAAGTTTATGATCAATTTACACTAGCTCTTTCATTATCATCCTCATCT 4167
