Nucleotide Global Alignment

Description

Query:
ccsbBroad304_11214
Subject:
NM_001258270.1
Aligned Length:
3689
Identities:
397
Gaps:
3253

Alignment

Query    1  ATGAAATCGTGCGCAGTGTCGCTCACTACCGCCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGG  74
            ||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGAAATCCTGCGCAGTGTCGCTCACTACCGCCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGG  74

Query   75  AAAAGCGAGCCGCGAGAGTGAAGAGGAGTCTGTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGG  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  AAAAGCGAGCCGCGAGAGTGAAGAGGAGTCTGTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGG  148

Query  149  ACAGCCGTCTCTTCGGGTTCGTGAGGCTTCATGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGG-----  217
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct  149  ACAGCCGTCTCTTCGGGTTCGTGAGGCTTCATGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGGCTGTT  222

Query  218  ----------------------TAAAAGC--AACCAGACGCAAAG------------TCTTT---------GGT  246
                                  |||||||  |     |.|.||||            |||||         |||
Sbjct  223  CGCTGCTACGAATCTTTAATCTTAAAAGCTGA-----AGGAAAAGTGGAGTCTGACTTCTTTTGCCAATTAGGT  291

Query  247  CCGCACTT------------------------------------TGC------------------TCTACCAAG  266
               |||||                                    |||                  |.|||  ||
Sbjct  292  ---CACTTCAACCTCTTGTTGGAAGATTATTCAAAAGCATTATCTGCATATCAGAGATATTACAGTTTAC--AG  360

Query  267  GC----------------CCCGCGTTCCT-TACCGCC----------------------CA-------------  288
            ||                .|.|||||..| ||..|||                      ||             
Sbjct  361  GCTGACTACTGGAAGAATGCTGCGTTTTTATATGGCCTTGGTTTGGTCTACTTCTACTACAATGCATTTCATTG  434

Query  289  -GCCAGTA------------------TTTATTTTG------GCTCTGCTCCATGGCCAAGG-------------  324
             ||.|.||                  |||||.|||      |||.|..||.|  |||||||             
Sbjct  435  GGCAATTAAAGCATTTCAAGATGTCCTTTATGTTGACCCCAGCTTTTGTCGA--GCCAAGGAAATTCATTTACG  506

Query  325  ----GGTCGGA-----AAAGTG------------------------------TTTC---TTGCCT---TTG-CT  352
                ||.|..|     ||||||                              ||||   |.||||   ||| ||
Sbjct  507  ACTTGGGCTCATGTTCAAAGTGAACACAGACTACAAGTCTAGTTTAAAGCATTTTCAGTTAGCCTTGATTGACT  580

Query  353  G---TCCCCGTACT----------CTGGAAT---ACTTC-----GCCCCTTGCT-------CCAGA------CT  392
            |   |||..|||||          |||.|||   |.|||     ||||.||..|       |||||      .|
Sbjct  581  GTAATCCATGTACTTTGTCCAATGCTGAAATTCAATTTCATATTGCCCATTTGTATGAAACCCAGAGGAAGTAT  654

Query  393  CCCTTCTACTCTG---AGGA--------AAAAAAAAATCGGACGCTTTGG--GACCGGGCTAAACCGGGT--CT  451
            |      |.||||   ||||        ||.||           ||||.|  |||.|   .|||||   |  ||
Sbjct  655  C------ATTCTGCAAAGGAGGCATATGAACAA-----------CTTTTGCAGACAG---AAAACC---TTCCT  705

Query  452  ACACCA-------CA-------TGC--CTGTTACTT--------------------------------------  471
            .|||.|       ||       |||  |.||||..|                                      
Sbjct  706  GCACAAGTAAAAGCAACTGTATTGCAACAGTTAGGTTGGATGCATCATAATATGGATCTAGTAGGAGACAAAGC  779

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct  780  CACAAAGGAAAGCTATGCTATTCAGTATCTCCAAAAGTCTTTGGAGGCAGATCCTAATTCTGGCCAATCGTGGT  853

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct  854  ATTTTCTTGGAAGGTGTTATTCAAGTATTGGGAAAGTTCAGGATGCCTTTATATCTTACAGGCAATCTATTGAT  927

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct  928  AAATCAGAAGCAAGTGCAGATACATGGTGTTCAATAGGTGTGTTGTATCAGCAGCAAAATCAGCCTATGGATGC  1001

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1002  TTTACAGGCATATATTTGTGCTGTACAATTGGACCATGGGCATGCCGCAGCCTGGATGGACCTAGGTACTCTCT  1075

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1076  ATGAATCCTGCAATCAACCTCAAGATGCCATTAAATGCTACCTAAATGCAGCTAGAAGCAAACGTTGTAGTAAT  1149

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1150  ACCTCTACGCTTGCTGCAAGAATTAAATTTCTACAGAATGGTTCTGATAACTGGAATGGTGGCCAGAGTCTTTC  1223

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1224  ACATCATCCAGTACAGCAAGTTTATTCGTTGTGTTTGACACCACAGAAATTACAGCACTTGGAACAACTGCGAG  1297

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1298  CAAATAGAGATAATTTAAATCCAGCACAGAAGCATCAGCTGGAACAGTTAGAAAGTCAGTTTGTCTTAATGCAG  1371

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1372  CAAATGAGACACAAAGAAGTTGCTCAGGGGCTTCATAAAAGTCAGAGTTCATGTTTGTCAGGACCTAATGAAGA  1445

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1446  ACAACCTCTGTTTTCCACTGGGTCAGCCCAGTATCACCAGGCAACTAGCACTGGTATTAAGAAGGCGAATGAAC  1519

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1520  ATCTCACTCTGCCTAGTAATTCAGTACCACAGGGGGATGCTGACAGTCACCTCTCCTGTCATACTGCTACCTCA  1593

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1594  GGTGGACAACAAGGCATTATGTTTACCAAAGAGAGCAAGCCTTCAAAAAATAGATCCTTGGTGCCTGAAACAAG  1667

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1668  CAGGCATACTGGAGACACATCTAATGGCTGTGCTGATGTCAAGGGACTTTCTAATCATGTTCATCAGTTGATAG  1741

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1742  CAGATGCTGTTTCCAGTCCTAACCATGGAGATTCACCAAATTTATTAATTGCAGACAATCCTCAGCTCTCTGCT  1815

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1816  TTGTTGATTGGAAAAGCCAATGGCAATGTGGGTACTGGAACCTGTGACAAAGTGAATAATATTCACCCAGCTGT  1889

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1890  TCATACAAAGACTGATCATTCTGTTGCCTCTTCACCCTCTTCAGCCATTTCCACAGCAACACCTTCTCCTAAAT  1963

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 1964  CCACTGAGCAGAGAAGCATAAACAGTGTTACCAGCCTTAACAGTCCTCACAGTGGATTACACACAGTCAATGGA  2037

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2038  GAGGGGCTGGGGAAGTCACAGAGCTCTACAAAAGTAGACCTGCCTTTAGCTAGCCACAGATCTACTTCTCAGAT  2111

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2112  CTTACCATCAATGTCAGTGTCTATATGCCCCAGTTCAACAGAAGTTCTGAAAGCATGCAGGAATCCAGGTAAAA  2185

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2186  ATGGCTTGTCTAATAGCTGCATTTTGTTAGATAAATGTCCACCTCCAAGACCACCAACTTCACCATACCCACCC  2259

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2260  TTGCCAAAGGACAAGTTGAATCCACCCACACCTAGTATTTACTTGGAAAATAAACGTGATGCTTTCTTTCCTCC  2333

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2334  ATTACATCAATTTTGTACAAATCCAAAAAACCCTGTTACAGTAATACGTGGCCTTGCTGGAGCTCTTAAATTAG  2407

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2408  ATCTTGGACTTTTCTCTACCAAAACTTTGGTAGAAGCTAACAATGAACATATGGTAGAAGTGAGGACACAGTTG  2481

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2482  CTGCAACCAGCAGATGAAAACTGGGATCCCACTGGAACAAAGAAAATCTGGCGTTGTGAAAGCAATAGATCTCA  2555

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2556  TACTACAATTGCCAAATACGCACAATACCAGGCTTCCTCCTTCCAGGAATCATTGAGAGAAGAAAATGAGAAAA  2629

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2630  GAACACAACACAAAGATCATTCAGATAACGAATCCACATCTTCAGAGAATTCTGGAAGGAGAAGGAAAGGACCT  2703

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2704  TTTAAAACCATAAAATTTGGGACCAACATTGACCTCTCTGATAACAAAAAGTGGAAGTTGCAGTTACATGAACT  2777

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2778  GACTAAACTTCCTGCTTTTGCGCGTGTGGTGTCAGCAGGAAATCTTCTAACCCATGTTGGGCATACCATTCTGG  2851

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2852  GCATGAATACAGTACAACTGTATATGAAAGTTCCAGGGAGTCGGACACCAGGTCACCAAGAAAATAACAACTTC  2925

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 2926  TGCTCTGTTAACATAAATATTGGTCCAGGAGATTGTGAATGGTTTGTTGTACCTGAAGATTATTGGGGTGTTCT  2999

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3000  GAATGACTTCTGTGAAAAAAATAATTTGAATTTTTTAATGAGTTCTTGGTGGCCCAACCTTGAAGATCTTTATG  3073

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3074  AAGCAAATGTCCCTGTGTATAGATTTATTCAGCGACCTGGAGATTTGGTCTGGATAAATGCAGGCACTGTGCAT  3147

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3148  TGGGTTCAAGCTGTTGGCTGGTGCAATAACATTGCCTGGAATGTTGGTCCACTTACAGCCTGCCAGTATAAATT  3221

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3222  GGCAGTGGAACGGTATGAATGGAACAAATTGAAAAGTGTGAAGTCACCAGTACCCATGGTGCATCTTTCCTGGA  3295

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3296  ATATGGCACGAAATATCAAAGTCTCAGATCCAAAGCTTTTTGAAATGATTAAGTATTGTCTTTTGAAAATTCTG  3369

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3370  AAGCAATATCAGACATTGAGAGAAGCTCTTGTTGCAGCAGGAAAAGAGGTTATATGGCATGGGCGGACAAATGA  3443

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3444  TGAACCAGCTCATTACTGTAGCATTTGTGAGGTGGAGGTTTTTAATCTGCTTTTTGTCACTAATGAAAGCAATA  3517

Query  472  --------------------------------------------------------------------------  471
                                                                                      
Sbjct 3518  CTCAAAAAACCTACATAGTACATTGCCATGATTGTGCACGAAAAACAAGCAAAAGTTTGGAAAATTTTGTGGTG  3591

Query  472  ---------------------------------------------------------------  471
                                                                           
Sbjct 3592  CTCGAACAGTACAAAATGGAGGACCTAATCCAAGTTTATGATCAATTTACACTAGTAAGTCAT  3654

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