Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11214
- Subject:
- NR_047600.1
- Aligned Length:
- 6480
- Identities:
- 395
- Gaps:
- 6039
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTCATCGTTTGTTGTTTAGATAATATCATGAACTGATAAATGCAGTTGCCACGTTGATTCCCTAGGGCCTGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTACCGACTGAGGTCATAAGATATTATGCCTTCTCTTTAGACTTGGTCAGTGGAGAGGAAATGGGCAAAGAACC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCCTATGGAGGTGACAAGGCCTTAGGGCCAAAAGTCTTGAGGGTGAAGGTTTAGGGCCTGCGCAGCTTCCCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCATGCCCCGCAAGGTCTCGCATTCGCAAGGCTTGTGACAGTGGGAGCCTCATTACGGACTCTCCTAAAGTCCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTGTCCTCTTTTCGCATTTGCGCCCCGTGGGTGATGCCCGATGCCGCCCTTCCCATCGCTCTCTTCCCCTTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGCGTATCGCAACTGCAAAAACACCCAGCACAGACACTCCATTTTCTATCTTAATGCATTTAACTAGCACAAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTACAGGTTGTTCCATCCCAGAGACTACCCTTTTCTCCATAGACGTGACCATCAACCAACCAGCGGTCAGAATC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGTCAGCCTCTGTCATGTTCCTAGGTCCTTGGCGAACTGGCTGGGCGGGGTCCCAGCAGCCTAGGAGTACAGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAGCAATGCCTGACGTAAGTCAACAAAGATCACGTGAGACGAATCAGTCGCCTAGATTGGCTACAACTAAGTGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTGGGAGCGGGGAGGTCGCGGCGGCTGCGTGGGGTTCGCCCGTGACACAATTACAACTTTGTGCTGGTGCTGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAAGTTTGTGATTTTAAGAAATTCTGCTGTGCTCTCCAGCACTGCGAGCTTCTGCCTTCCCTGTAGTTTCCCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGTGATCCAGGTAGCCGAGTTCCGCTGCCCGTGCTTCGGTAGCTTAAGTCTTTGCCTCAGCTTTTTTCCTTGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCCGCTGAGGAGGCGATAAAATTGGCGTCACAGTCTCAAGCAGCGATTGAAGGCGTCTTTTCAACTACTCGAT 962
Query 1 -------------------------------------------ATGAAATCGTGCGCAGTGTCGCTCACTACCG 31
||||||||.||||||||||||||||||||||
Sbjct 963 TAAGGTTGGGTATCGTCGTGGGACTTGGAAATTTGTTGTTTCCATGAAATCCTGCGCAGTGTCGCTCACTACCG 1036
Query 32 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 1110
Query 106 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 1184
Query 180 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGG---------------------------TAAAAGC-- 224
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1185 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGGCTGTTCGCTGCTACGAATCTTTAATCTTAAAAGCTG 1258
Query 225 AACCAGACGCAAAG------------TCTTT---------GGTCCGCACTTTGCTCTACCAAGGCCCCGCGTT- 276
| |.|.|||| ||||| ||| ||||| ||| ||.|..|||
Sbjct 1259 A-----AGGAAAAGTGGAGTCTGACTTCTTTTGCCAATTAGGT---CACTT--------CAA--CCTCTTGTTG 1314
Query 277 ----------------CCTTACCGCC----CAGCCAG-TATT-TATTTT---GGCT----------------CT 309
|.|||.|..| ||| || |||| .|.||| |||| ||
Sbjct 1315 GAAGATTATTCAAAAGCATTATCTGCATATCAG--AGATATTACAGTTTACAGGCTGACTACTGGAAGAATGCT 1386
Query 310 GC-----TCCATGGCCAAGG---GGTC-------------------------GG-----AAAAGTGTTTC---- 341
|| |..||||||..|| |||| || .||||..||||
Sbjct 1387 GCGTTTTTATATGGCCTTGGTTTGGTCTACTTCTACTACAATGCATTTCATTGGGCAATTAAAGCATTTCAAGA 1460
Query 342 TTGCCTT--TGCTGTCCCCGTA-CTCT-----------GGAA----------TACTTCGCCCCTTGCTC----- 386
|..|||| ||.||.|||| | ||.| |||| .||||.|.|.|.||.||
Sbjct 1461 TGTCCTTTATGTTGACCCC--AGCTTTTGTCGAGCCAAGGAAATTCATTTACGACTTGGGCTCATGTTCAAAGT 1532
Query 387 -----CAGACT----------------------------------------------CCCTTCTACT------- 402
|||||| .||.|.||||
Sbjct 1533 GAACACAGACTACAAGTCTAGTTTAAAGCATTTTCAGTTAGCCTTGATTGACTGTAATCCATGTACTTTGTCCA 1606
Query 403 ---CTGAGGAAAAAAAAAATC----------GGACGC------------TTTG-GGACCGGGCTAAACCGGGT- 449
|||| |||..||..||| |||.|| |||| .|||.| .||||| |
Sbjct 1607 ATGCTGA--AAAGGAAGTATCATTCTGCAAAGGAGGCATATGAACAACTTTTGCAGACAG---AAAACC---TT 1672
Query 450 -CTACACCA-------CA-------TGC--CTGTTACTT----------------------------------- 471
||.|||.| || ||| |.||||..|
Sbjct 1673 CCTGCACAAGTAAAAGCAACTGTATTGCAACAGTTAGGTTGGATGCATCATAATATGGATCTAGTAGGAGACAA 1746
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1747 AGCCACAAAGGAAAGCTATGCTATTCAGTATCTCCAAAAGTCTTTGGAGGCAGATCCTAATTCTGGCCAATCGT 1820
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1821 GGTATTTTCTTGGAAGGTGTTATTCAAGTATTGGGAAAGTTCAGGATGCCTTTATATCTTACAGGCAATCTATT 1894
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1895 GATAAATCAGAAGCAAGTGCAGATACATGGTGTTCAATAGGTGTGTTGTATCAGCAGCAAAATCAGCCTATGGA 1968
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1969 TGCTTTACAGGCATATATTTGTGCTGTACAATTGGACCATGGGCATGCCGCAGCCTGGATGGACCTAGGTACTC 2042
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2043 TCTATGAATCCTGCAATCAACCTCAAGATGCCATTAAATGCTACCTAAATGCAGCTAGAAGCAAACGTTGTAGT 2116
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2117 AATACCTCTACGCTTGCTGCAAGAATTAAATTTCTACAGGCTCAGTTGTGTAACCTTCCACAAAGTAGTCTACA 2190
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2191 GAATAAAACTAAATTACTTCCTAGTATTGAGGAGGCATGGAGCCTACCAATCCCCGCAGAGCTTACCTCCAGGC 2264
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2265 AGGGTGCCATGAACACAGCACAGCAGAATGGTTCTGATAACTGGAATGGTGGCCAGAGTCTTTCACATCATCCA 2338
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2339 GTACAGCAAGTTTATTCGTTGTGTTTGACACCACAGAAATTACAGCACTTGGAACAACTGCGAGCAAATAGAGA 2412
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2413 TAATTTAAATCCAGCACAGAAGCATCAGCTGGAACAGTTAGAAAGTCAGTTTGTCTTAATGCAGCAAGATTTGA 2486
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2487 CAAGAATGTAAACTGAATGGAAATTTGAAATCTTCTGTTTCATGAAGGAAAAATGGCCTGAATTATATATTAAA 2560
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2561 GTGGATCTATTGTCTATATGTTTTTTTAGAGACATGAAATGTTATATGAAATTAGAGATGTATGAACTACACAT 2634
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2635 TTTCAAAGTTACACAGCAGTTTTTCTTTTTTGTTTTTGAAGATGAGACACAAAGAAGTTGCTCAGGGGCTTCAT 2708
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2709 AAAAGTCAGAGTTCATGTTTGTCAGGACCTAATGAAGAACAACCTCTGTTTTCCACTGGGTCAGCCCAGTATCA 2782
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2783 CCAGGCAACTAGCACTGGTATTAAGAAGGCGAATGAACATCTCACTCTGCCTAGTAATTCAGTACCACAGGGGG 2856
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2857 ATGCTGACAGTCACCTCTCCTGTCATACTGCTACCTCAGGTGGACAACAAGGCATTATGTTTACCAAAGAGAGC 2930
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2931 AAGCCTTCAAAAAATAGATCCTTGGTGCCTGAAACAAGCAGGCATACTGGAGACACATCTAATGGCTGTGCTGA 3004
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3005 TGTCAAGGGACTTTCTAATCATGTTCATCAGTTGATAGCAGATGCTGTTTCCAGTCCTAACCATGGAGATTCAC 3078
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3079 CAAATTTATTAATTGCAGACAATCCTCAGCTCTCTGCTTTGTTGATTGGAAAAGCCAATGGCAATGTGGGTACT 3152
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3153 GGAACCTGTGACAAAGTGAATAATATTCACCCAGCTGTTCATACAAAGACTGATCATTCTGTTGCCTCTTCACC 3226
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3227 CTCTTCAGCCATTTCCACAGCAACACCTTCTCCTAAATCCACTGAGCAGAGAAGCATAAACAGTGTTACCAGCC 3300
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3301 TTAACAGTCCTCACAGTGGATTACACACAGTCAATGGAGAGGGGCTGGGGAAGTCACAGAGCTCTACAAAAGTA 3374
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3375 GACCTGCCTTTAGCTAGCCACAGATCTACTTCTCAGATCTTACCATCAATGTCAGTGTCTATATGCCCCAGTTC 3448
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3449 AACAGAAGTTCTGAAAGCATGCAGGAATCCAGGTAAAAATGGCTTGTCTAATAGCTGCATTTTGTTAGATAAAT 3522
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3523 GTCCACCTCCAAGACCACCAACTTCACCATACCCACCCTTGCCAAAGGACAAGTTGAATCCACCCACACCTAGT 3596
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3597 ATTTACTTGGAAAATAAACGTGATGCTTTCTTTCCTCCATTACATCAATTTTGTACAAATCCAAAAAACCCTGT 3670
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3671 TACAGTAATACGTGGCCTTGCTGGAGCTCTTAAATTAGATCTTGGACTTTTCTCTACCAAAACTTTGGTAGAAG 3744
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3745 CTAACAATGAACATATGGTAGAAGTGAGGACACAGTTGCTGCAACCAGCAGATGAAAACTGGGATCCCACTGGA 3818
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3819 ACAAAGAAAATCTGGCGTTGTGAAAGCAATAGATCTCATACTACAATTGCCAAATACGCACAATACCAGGCTTC 3892
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3893 CTCCTTCCAGGAATCATTGAGAGAAGAAAATGAGAAAAGAACACAACACAAAGATCATTCAGATAACGAATCCA 3966
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3967 CATCTTCAGAGAATTCTGGAAGGAGAAGGAAAGGACCTTTTAAAACCATAAAATTTGGGACCAACATTGACCTC 4040
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4041 TCTGATAACAAAAAGTGGAAGTTGCAGTTACATGAACTGACTAAACTTCCTGCTTTTGCGCGTGTGGTGTCAGC 4114
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4115 AGGAAATCTTCTAACCCATGTTGGGCATACCATTCTGGGCATGAATACAGTACAACTGTATATGAAAGTTCCAG 4188
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4189 GGAGTCGGACACCAGGTCACCAAGAAAATAACAACTTCTGCTCTGTTAACATAAATATTGGTCCAGGAGATTGT 4262
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4263 GAATGGTTTGTTGTACCTGAAGATTATTGGGGTGTTCTGAATGACTTCTGTGAAAAAAATAATTTGAATTTTTT 4336
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4337 AATGAGTTCTTGGTGGCCCAACCTTGAAGATCTTTATGAAGCAAATGTCCCTGTGTATAGATTTATTCAGCGAC 4410
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4411 CTGGAGATTTGGTCTGGATAAATGCAGGCACTGTGCATTGGGTTCAAGCTGTTGGCTGGTGCAATAACATTGCC 4484
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4485 TGGAATGTTGGTCCACTTACAGCCTGCCAGTATAAATTGGCAGTGGAACGGTATGAATGGAACAAATTGAAAAG 4558
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4559 TGTGAAGTCACCAGTACCCATGGTGCATCTTTCCTGGAATATGGCACGAAATATCAAAGTCTCAGATCCAAAGC 4632
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4633 TTTTTGAAATGATTAAGTATTGTCTTTTGAAAATTCTGAAGCAATATCAGACATTGAGAGAAGCTCTTGTTGCA 4706
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4707 GCAGGAAAAGAGGTTATATGGCATGGGCGGACAAATGATGAACCAGCTCATTACTGTAGCATTTGTGAGGTGGA 4780
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4781 GGTTTTTAATCTGCTTTTTGTCACTAATGAAAGCAATACTCAAAAAACCTACATAGTACATTGCCATGATTGTG 4854
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4855 CACGAAAAACAAGCAAAAGTTTGGAAAATTTTGTGGTGCTCGAACAGTACAAAATGGAGGACCTAATCCAAGTT 4928
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4929 TATGATCAATTTACACTAGCTCTTTCATTATCATCCTCATCTTGATATAGTTCCATGAATATTAAATGAGATTA 5002
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5003 TTTCTGCTCTTCAGGAAATTTCTGCACCACTGGTTTTGTAGCTGTTTCATAAAACTGTTGACTAAAAGCTATGT 5076
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5077 CTATGCAACCTTCCAAGAATAGTATGTCAAGCAACTGGACACAGTGCTGCCTCTGCTTCAGGACTTAACATGCT 5150
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5151 GATCCAGCTGTACTTCAGAAAAATAATATTAATCATATGTTTTGTGTACGTATGACAAACTGTCAAAGTGACAC 5224
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5225 AGAATACTGATTTGAAGATAGCCTTTTTTATGTTTCTCTATTTCTGGGCTGATGAATTAATATTCATTTGTATT 5298
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5299 TTAACCCTGCAGAATTTTCCTTAGTTAAAAACACTTTCCTAGCTGGTCATTTCTTCATAAGATAGCAAATTTAA 5372
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5373 ATCTCTCCTCGATCAGCTTTTAAAAAATGTGTACTATTATCTGAGGAAGTTTTTTACTGCTTTATGTTTTTGTG 5446
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5447 TGTTTTGAGGCCATGATGATTACATTTGTGGTTCCAAAATAATTTTTTTAAATATTAATAGCCCATATACAAAG 5520
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5521 ATAATGGATTGCACATAGACAAAGAAATAAACTTCAGATTTGTGATTTTTGTTTCTAAACTTGATACAGATTTA 5594
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5595 CACTATTTATAAATACGTATTTATTGCCTGAAAATATTTGTGAATGGAATGTTGTTTTTTTCCAGACGTAACTG 5668
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5669 CCATTAAATACTAAGGAGTTCTGTAGTTTTAAACACTACTCCTATTACATTTTATATGTGTAGATAAAACTGCT 5742
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5743 TAGTATTATACAGAAATTTTTATTAAAATTGTTAAATGTTTAAAGGGTTTCCCAATGTTTGAGTTTAAAAAAGA 5816
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5817 CTTTCTGAAAAAATCCACTTTTTGTTCATTTTCAAACCTAATGATTATATGTATTTTATATGTGTGTGTATGTG 5890
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5891 TACACACATGTATAATATATACAGAAACCTCGATATATAATTGTATAGATTTTAAAAGTTTTATTTTTTACATC 5964
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5965 TATGGTAGTTTTTGAGGTGCCTATTATAAAGTATTACGGAAGTTTGCTGTTTTTAAAGTAAATGTCTTTTAGTG 6038
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6039 TGATTTATTAAGTTGTAGTCACCATAGTGATAGCCCATAAATAATTGCTGGAAAATTGTATTTTATAACAGTAG 6112
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6113 AAAACATATAGTCAGTGAAGTAAATATTTTAAAGGAAACATTATATAGATTTGATAAATGTTGTTTATAATTAA 6186
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6187 GAGTTTCTTATGGAAAAGAGATTCAGAATGATAACCTCTTTTAGAGAACAAATAAGTGACTTATTTTTTTAAAG 6260
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6261 CTAGATGACTTTGAAATGCTATACTGTCCTGCTTGTACAACATGGTTTGGGGTGAAGGGGAGGAAAGTATTAAA 6334
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6335 AAATCTATATCGCTAGTAAATTGTAATAAGTTCTATTAAAACTTGTATTTCATATGAAAAATTTGCTAATTTAA 6408
Query 472 ------------------------------------------ 471
Sbjct 6409 TATTAACTCATTTGATAATAATACTTGTCTTTTCTACCTCTC 6450
