Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11214
- Subject:
- NR_047617.1
- Aligned Length:
- 5946
- Identities:
- 397
- Gaps:
- 5499
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTCATCGTTTGTTGTTTAGATAATATCATGAACTGATAAATGCAGTTGCCACGTTGATTCCCTAGGGCCTGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTACCGACTGAGGTCATAAGATATTATGCCTTCTCTTTAGACTTGGTCAGTGGAGAGGAAATGGGCAAAGAACC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCCTATGGAGGTGACAAGGCCTTAGGGCCAAAAGTCTTGAGGGTGAAGGTTTAGGGCCTGCGCAGCTTCCCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCATGCCCCGCAAGGTCTCGCATTCGCAAGGCTTGTGACAGTGGGAGCCTCATTACGGACTCTCCTAAAGTCCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTGTCCTCTTTTCGCATTTGCGCCCCGTGGGTGATGCCCGATGCCGCCCTTCCCATCGCTCTCTTCCCCTTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGCGTATCGCAACTGCAAAAACACCCAGCACAGACACTCCATTTTCTATCTTAATGCATTTAACTAGCACAAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTACAGGTTGTTCCATCCCAGAGACTACCCTTTTCTCCATAGACGTGACCATCAACCAACCAGCGGTCAGAATC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGTCAGCCTCTGTCATGTTCCTAGGTCCTTGGCGAACTGGCTGGGCGGGGTCCCAGCAGCCTAGGAGTACAGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAGCAATGCCTGACGTAAGTCAACAAAGATCACGTGAGACGAATCAGTCGCCTAGATTGGCTACAACTAAGTGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTGGGAGCGGGGAGGTCGCGGCGGCTGCGTGGGGTTCGCCCGTGACACAATTACAACTTTGTGCTGGTGCTGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAAGTTTGTGATTTTAAGAAATTCTGCTGTGCTCTCCAGCACTGCGAGCTTCTGCCTTCCCTGTAGTTTCCCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGTGATCCAGGTAGCCGAGTTCCGCTGCCCGTGCTTCGGTAGCTTAAGTCTTTGCCTCAGCTTTTTTCCTTGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCCGCTGAGGAGGCGATAAAATTGGCGTCACAGTCTCAAGCAGCGATTGAAGGCGTCTTTTCAACTACTCGAT 962
Query 1 -------------------------------------------ATGAAATCGTGCGCAGTGTCGCTCACTACCG 31
||||||||.||||||||||||||||||||||
Sbjct 963 TAAGGTTGGGTATCGTCGTGGGACTTGGAAATTTGTTGTTTCCATGAAATCCTGCGCAGTGTCGCTCACTACCG 1036
Query 32 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 1110
Query 106 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 1184
Query 180 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGG---------------------------TAAAAGC-- 224
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1185 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGGCTGTTCGCTGCTACGAATCTTTAATCTTAAAAGCTG 1258
Query 225 AACCAGACGCAAAG------------TCTTT---------GGTCCGCACTTTGCTCTACCAAGGCCCCGCGTT- 276
| |.|.|||| ||||| ||| ||||| ||| ||.|..|||
Sbjct 1259 A-----AGGAAAAGTGGAGTCTGACTTCTTTTGCCAATTAGGT---CACTT--------CAA--CCTCTTGTTG 1314
Query 277 ----------------CCTTACCGCC----CAGCCAG-TATT-TATTTT---GGCT----------------CT 309
|.|||.|..| ||| || |||| .|.||| |||| ||
Sbjct 1315 GAAGATTATTCAAAAGCATTATCTGCATATCAG--AGATATTACAGTTTACAGGCTGACTACTGGAAGAATGCT 1386
Query 310 GC-----TCCATGGCCAAGG---GGTC-------------------------GG-----AAAAGTGTTTC---- 341
|| |..||||||..|| |||| || .||||..||||
Sbjct 1387 GCGTTTTTATATGGCCTTGGTTTGGTCTACTTCTACTACAATGCATTTCATTGGGCAATTAAAGCATTTCAAGA 1460
Query 342 TTGCCTT--TGCTGTCCCCGTA-CTCT-----------GGAA----------TACTTCGCCCCTTGCTC----- 386
|..|||| ||.||.|||| | ||.| |||| .||||.|.|.|.||.||
Sbjct 1461 TGTCCTTTATGTTGACCCC--AGCTTTTGTCGAGCCAAGGAAATTCATTTACGACTTGGGCTCATGTTCAAAGT 1532
Query 387 -----CAGACTCC----CT-----------------------TCTACTCTGAGG-AAAAAAAAAATCGGACGCT 427
||||||.| || .|||.||..||| |.||..|.|.|...||||.
Sbjct 1533 GAACACAGACTACAAGTCTAGTTTAAAGGATTGAGTGCAGTGGCTATTCACAGGCATAATCATAGTACAACGCG 1606
Query 428 TTGGGA---CCGGGC------TAAACC-------------------------GGGTCTACACCA----CA---- 459
| ||| ||.||| |.|.|| |||.|||||.|| ||
Sbjct 1607 T--GGAATTCCTGGCCCAAAGTGATCCTTCCATCTCAGACTCCCAAGCAGTTGGGACTACAGCATTTTCAGTTA 1678
Query 460 --------TGCCTGT--------TACTT---------------------------------------------- 471
||.|||| |||||
Sbjct 1679 GCCTTGATTGACTGTAATCCATGTACTTTGTCCAATGCTGAAATTCAATTTCATATTGCCCATTTGTATGAAAC 1752
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1753 CCAGAGGAAGTATCATTCTGCAAAGGAGGCATATGAACAACTTTTGCAGACAGAAAACCTTCCTGCACAAGTAA 1826
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1827 AAGCAACTGTATTGCAACAGTTAGGTTGGATGCATCATAATATGGATCTAGTAGGAGACAAAGCCACAAAGGAA 1900
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1901 AGCTATGCTATTCAGTATCTCCAAAAGTCTTTGGAGGCAGATCCTAATTCTGGCCAATCGTGGTATTTTCTTGG 1974
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1975 AAGGTGTTATTCAAGTATTGGGAAAGTTCAGGATGCCTTTATATCTTACAGGCAATCTATTGATAAATCAGAAG 2048
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2049 CAAGTGCAGATACATGGTGTTCAATAGGTGTGTTGTATCAGCAGCAAAATCAGCCTATGGATGCTTTACAGGCA 2122
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2123 TATATTTGTGCTGTACAATTGGACCATGGGCATGCCGCAGCCTGGATGGACCTAGGTACTCTCTATGAATCCTG 2196
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2197 CAATCAACCTCAAGATGCCATTAAATGCTACCTAAATGCAGCTAGAAGCAAACGTTGTAGTAATACCTCTACGC 2270
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2271 TTGCTGCAAGAATTAAATTTCTACAGGCTTATAGAGCTCATGATCCAAATACTGAACATGTATTAAACCACAGT 2344
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2345 CAAACACCAATTTTACAGCAATCCTTGTCACTACACATGATTACTTCTAGCCAAGTAGAAGGCCTGTCCAGTCC 2418
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2419 TGCCAAGAAGAAAAGAACATCTAGTCCAACAAAGAATGGTTCTGATAACTGGAATGGTGGCCAGAGTCTTTCAC 2492
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2493 ATCATCCAGTACAGCAAGTTTATTCGTTGTGTTTGACACCACAGAAATTACAGCACTTGGAACAACTGCGAGCA 2566
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2567 AATAGAGATAATTTAAATCCAGCACAGAAGCATCAGCTGGAACAGTTAGAAAGTCAGTTTGTCTTAATGCAGCA 2640
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2641 AATGAGACACAAAGAAGTTGCTCAGGTACGAACTACTGGAATTCATAACGGGGCCATAACTGATTCATCACTGC 2714
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2715 CTACAAACTCTGTCTCTAATCGACAACCACATGGTGCTCTGACCAGAGTATCTAGCGTCTCTCAGCCTGGAGTT 2788
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2789 CGCCCTGCTTGTGTTGAAAAACTTTTGTCCAGTGGAGCTTTTTCTGCAGGCTGTATTCCTTGTGGCACATCAAA 2862
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2863 AATTCTAGGAAGTACAGACACTATCTTGCTAGGCAGTAATTGTATAGCAGGAAGTGAAAGTAATGGAAATGTGC 2936
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2937 CTTACCTGCAGCAAAATACACACACTCTACCTCATAATCATACAGACCTGAACAGCAGCACAGAAGAGCCATGG 3010
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3011 AGAAAACAGCTATCTAACTCCGCTCAGGAATCCAGTTGGAAAATAAACGTGATGCTTTCTTTCCTCCATTACAT 3084
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3085 CAATTTTGTACAAATCCAAAAAACCCTGTTACAGTAATACGTGGCCTTGCTGGAGCTCTTAAATTAGATCTTGG 3158
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3159 ACTTTTCTCTACCAAAACTTTGGTAGAAGCTAACAATGAACATATGGTAGAAGTGAGGACACAGTTGCTGCAAC 3232
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3233 CAGCAGATGAAAACTGGGATCCCACTGGAACAAAGAAAATCTGGCGTTGTGAAAGCAATAGATCTCATACTACA 3306
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3307 ATTGCCAAATACGCACAATACCAGGCTTCCTCCTTCCAGGAATCATTGAGAGAAGAAAATGAGAAAAGAACACA 3380
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3381 ACACAAAGATCATTCAGATAACGAATCCACATCTTCAGAGAATTCTGGAAGGAGAAGGAAAGGACCTTTTAAAA 3454
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3455 CCATAAAATTTGGGACCAACATTGACCTCTCTGATAACAAAAAGTGGAAGTTGCAGTTACATGAACTGACTAAA 3528
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3529 CTTCCTGCTTTTGCGCGTGTGGTGTCAGCAGGAAATCTTCTAACCCATGTTGGGCATACCATTCTGGGCATGAA 3602
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3603 TACAGTACAACTGTATATGAAAGTTCCAGGGAGTCGGACACCAGAATGATTTATTATCCTAAAAGTTTCACAGG 3676
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3677 TCACCAAGAAAATAACAACTTCTGCTCTGTTAACATAAATATTGGTCCAGGAGATTGTGAATGGTTTGTTGTAC 3750
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3751 CTGAAGATTATTGGGGTGTTCTGAATGACTTCTGTGAAAAAAATAATTTGAATTTTTTAATGAGTTCTTGGTGG 3824
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3825 CCCAACCTTGAAGATCTTTATGAAGCAAATGTCCCTGTGTATAGATTTATTCAGCGACCTGGAGATTTGGTCTG 3898
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3899 GATAAATGCAGGCACTGTGCATTGGGTTCAAGCTGTTGGCTGGTGCAATAACATTGCCTGGAATGTTGGTCCAC 3972
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3973 TTACAGCCTGCCAGTATAAATTGGCAGTGGAACGGTATGAATGGAACAAATTGAAAAGTGTGAAGTCACCAGTA 4046
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4047 CCCATGGTGCATCTTTCCTGGAATATGGCACGAAATATCAAAGTCTCAGATCCAAAGCTTTTTGAAATGATTAA 4120
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4121 GTATTGTCTTTTGAAAATTCTGAAGCAATATCAGACATTGAGAGAAGCTCTTGTTGCAGCAGGAAAAGAGGTTA 4194
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4195 TATGGCATGGGCGGACAAATGATGAACCAGCTCATTACTGTAGCATTTGTGAGGTGGAGGTTTTTAATCTGCTT 4268
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4269 TTTGTCACTAATGAAAGCAATACTCAAAAAACCTACATAGTACATTGCCATGATTGTGCACGAAAAACAAGCAA 4342
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4343 AAGTTTGGAAAATTTTGTGGTGCTCGAACAGTACAAAATGGAGGACCTAATCCAAGTTTATGATCAATTTACAC 4416
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4417 TAGCTCTTTCATTATCATCCTCATCTTGATATAGTTCCATGAATATTAAATGAGATTATTTCTGCTCTTCAGGA 4490
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4491 AATTTCTGCACCACTGGTTTTGTAGCTGTTTCATAAAACTGTTGACTAAAAGCTATGTCTATGCAACCTTCCAA 4564
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4565 GAATAGTATGTCAAGCAACTGGACACAGTGCTGCCTCTGCTTCAGGACTTAACATGCTGATCCAGCTGTACTTC 4638
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4639 AGAAAAATAATATTAATCATATGTTTTGTGTACGTATGACAAACTGTCAAAGTGACACAGAATACTGATTTGAA 4712
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4713 GATAGCCTTTTTTATGTTTCTCTATTTCTGGGCTGATGAATTAATATTCATTTGTATTTTAACCCTGCAGAATT 4786
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4787 TTCCTTAGTTAAAAACACTTTCCTAGCTGGTCATTTCTTCATAAGATAGCAAATTTAAATCTCTCCTCGATCAG 4860
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4861 CTTTTAAAAAATGTGTACTATTATCTGAGGAAGTTTTTTACTGCTTTATGTTTTTGTGTGTTTTGAGGCCATGA 4934
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4935 TGATTACATTTGTGGTTCCAAAATAATTTTTTTAAATATTAATAGCCCATATACAAAGATAATGGATTGCACAT 5008
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5009 AGACAAAGAAATAAACTTCAGATTTGTGATTTTTGTTTCTAAACTTGATACAGATTTACACTATTTATAAATAC 5082
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5083 GTATTTATTGCCTGAAAATATTTGTGAATGGAATGTTGTTTTTTTCCAGACGTAACTGCCATTAAATACTAAGG 5156
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5157 AGTTCTGTAGTTTTAAACACTACTCCTATTACATTTTATATGTGTAGATAAAACTGCTTAGTATTATACAGAAA 5230
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5231 TTTTTATTAAAATTGTTAAATGTTTAAAGGGTTTCCCAATGTTTGAGTTTAAAAAAGACTTTCTGAAAAAATCC 5304
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5305 ACTTTTTGTTCATTTTCAAACCTAATGATTATATGTATTTTATATGTGTGTGTATGTGTACACACATGTATAAT 5378
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5379 ATATACAGAAACCTCGATATATAATTGTATAGATTTTAAAAGTTTTATTTTTTACATCTATGGTAGTTTTTGAG 5452
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5453 GTGCCTATTATAAAGTATTACGGAAGTTTGCTGTTTTTAAAGTAAATGTCTTTTAGTGTGATTTATTAAGTTGT 5526
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5527 AGTCACCATAGTGATAGCCCATAAATAATTGCTGGAAAATTGTATTTTATAACAGTAGAAAACATATAGTCAGT 5600
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5601 GAAGTAAATATTTTAAAGGAAACATTATATAGATTTGATAAATGTTGTTTATAATTAAGAGTTTCTTATGGAAA 5674
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5675 AGAGATTCAGAATGATAACCTCTTTTAGAGAACAAATAAGTGACTTATTTTTTTAAAGCTAGATGACTTTGAAA 5748
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5749 TGCTATACTGTCCTGCTTGTACAACATGGTTTGGGGTGAAGGGGAGGAAAGTATTAAAAAATCTATATCGCTAG 5822
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5823 TAAATTGTAATAAGTTCTATTAAAACTTGTATTTCATATGAAAAATTTGCTAATTTAATATTAACTCATTTGAT 5896
Query 472 -------------------------- 471
Sbjct 5897 AATAATACTTGTCTTTTCTACCTCTC 5922
