Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11214
- Subject:
- NR_047622.1
- Aligned Length:
- 5980
- Identities:
- 397
- Gaps:
- 5544
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTCATCGTTTGTTGTTTAGATAATATCATGAACTGATAAATGCAGTTGCCACGTTGATTCCCTAGGGCCTGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTACCGACTGAGGTCATAAGATATTATGCCTTCTCTTTAGACTTGGTCAGTGGAGAGGAAATGGGCAAAGAACC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCCTATGGAGGTGACAAGGCCTTAGGGCCAAAAGTCTTGAGGGTGAAGGTTTAGGGCCTGCGCAGCTTCCCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCATGCCCCGCAAGGTCTCGCATTCGCAAGGCTTGTGACAGTGGGAGCCTCATTACGGACTCTCCTAAAGTCCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTGTCCTCTTTTCGCATTTGCGCCCCGTGGGTGATGCCCGATGCCGCCCTTCCCATCGCTCTCTTCCCCTTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGCGTATCGCAACTGCAAAAACACCCAGCACAGACACTCCATTTTCTATCTTAATGCATTTAACTAGCACAAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTACAGGTTGTTCCATCCCAGAGACTACCCTTTTCTCCATAGACGTGACCATCAACCAACCAGCGGTCAGAATC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGTCAGCCTCTGTCATGTTCCTAGGTCCTTGGCGAACTGGCTGGGCGGGGTCCCAGCAGCCTAGGAGTACAGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAGCAATGCCTGACGTAAGTCAACAAAGATCACGTGAGACGAATCAGTCGCCTAGATTGGCTACAACTAAGTGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTGGGAGCGGGGAGGTCGCGGCGGCTGCGTGGGGTTCGCCCGTGACACAATTACAACTTTGTGCTGGTGCTGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAAGTTTGTGATTTTAAGAAATTCTGCTGTGCTCTCCAGCACTGCGAGCTTCTGCCTTCCCTGTAGTTTCCCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGTGATCCAGGTAGCCGAGTTCCGCTGCCCGTGCTTCGGTAGCTTAAGTCTTTGCCTCAGCTTTTTTCCTTGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCCGCTGAGGAGGCGATAAAATTGGCGTCACAGTCTCAAGCAGCGATTGAAGGCGTCTTTTCAACTACTCGAT 962
Query 1 -------------------------------------------ATGAAATCGTGCGCAGTGTCGCTCACTACCG 31
||||||||.||||||||||||||||||||||
Sbjct 963 TAAGGTTGGGTATCGTCGTGGGACTTGGAAATTTGTTGTTTCCATGAAATCCTGCGCAGTGTCGCTCACTACCG 1036
Query 32 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 1110
Query 106 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 1184
Query 180 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGG---------------------------TAAAAGC-- 224
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1185 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGGCTGTTCGCTGCTACGAATCTTTAATCTTAAAAGCTG 1258
Query 225 AACCAGACGCAAAG------------TCTTT---------GGTCCGCACTT----------------------- 254
| |.|.|||| ||||| ||| |||||
Sbjct 1259 A-----AGGAAAAGTGGAGTCTGACTTCTTTTGCCAATTAGGT---CACTTCAACCTCTTGTTGGAAGATTATT 1324
Query 255 -------------TGC------------------TCTACCAAGGC----------------CCCGCGTTCCT-T 280
||| |.||| |||| .|.|||||..| |
Sbjct 1325 CAAAAGCATTATCTGCATATCAGAGATATTACAGTTTAC--AGGCTGACTACTGGAAGAATGCTGCGTTTTTAT 1396
Query 281 ACCGCC----------------------CA--------------GCCAGTA------------------TTTAT 300
|..||| || ||.|.|| |||||
Sbjct 1397 ATGGCCTTGGTTTGGTCTACTTCTACTACAATGCATTTCATTGGGCAATTAAAGCATTTCAAGATGTCCTTTAT 1470
Query 301 TTTG------GCTCTGCTCCATGGCCAAGG-----------------GGTCGGA-----AAAGTG--------- 337
.||| |||.|..||.| ||||||| ||.|..| ||||||
Sbjct 1471 GTTGACCCCAGCTTTTGTCGA--GCCAAGGAAATTCATTTACGACTTGGGCTCATGTTCAAAGTGAACACAGAC 1542
Query 338 ---------------------TTTC---TTGCCT---TTG-CTG---TCCCCGTACT----------CTGGAAT 370
|||| |.|||| ||| ||| |||..||||| |||.|||
Sbjct 1543 TACAAGTCTAGTTTAAAGCATTTTCAGTTAGCCTTGATTGACTGTAATCCATGTACTTTGTCCAATGCTGAAAT 1616
Query 371 ---ACTTC-----GCCCCTTGCT-------CCAGA------CTCCCTTCTACTCTG---AGGA--------AAA 412
|.||| ||||.||..| ||||| .|| |.|||| |||| ||.
Sbjct 1617 TCAATTTCATATTGCCCATTTGTATGAAACCCAGAGGAAGTATC------ATTCTGCAAAGGAGGCATATGAAC 1684
Query 413 AAAAAATCGGACGCTTTGG--GACCGGGCTAAACCGGGT--CTACACCA-------CA-------TGC--CTGT 466
|| ||||.| |||.| .||||| | ||.|||.| || ||| |.||
Sbjct 1685 AA-----------CTTTTGCAGACAG---AAAACC---TTCCTGCACAAGTAAAAGCAACTGTATTGCAACAGT 1741
Query 467 TACTT--------------------------------------------------------------------- 471
||..|
Sbjct 1742 TAGGTTGGATGCATCATAATATGGATCTAGTAGGAGACAAAGCCACAAAGGAAAGCTATGCTATTCAGTATCTC 1815
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1816 CAAAAGTCTTTGGAGGCAGATCCTAATTCTGGCCAATCGTGGTATTTTCTTGGAAGTGTGTTGTATCAGCAGCA 1889
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1890 AAATCAGCCTATGGATGCTTTACAGGCATATATTTGTGCTGTACAATTGGACCATGGGCATGCCGCAGCCTGGA 1963
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1964 TGGACCTAGGTACTCTCTATGAATCCTGCAATCAACCTCAAGATGCCATTAAATGCTACCTAAATGCAGCTAGA 2037
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2038 AGCAAACGTTGTAGTAATACCTCTACGCTTGCTGCAAGAATTAAATTTCTACAGGCTCAGTTGTGTAACCTTCC 2111
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2112 ACAAAGTAGTCTACAGAATAAAACTAAATTACTTCCTAGTATTGAGGAGGCATGGAGCCTACCAATCCCCGCAG 2185
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2186 AGCTTACCTCCAGGCAGGGTGCCATGAACACAGCACAGCAGGCTTATAGAGCTCATGATCCAAATACTGAACAT 2259
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2260 GTATTAAACCACAGTCAAACACCAATTTTACAGCAATCCTTGTCACTACACATGATTACTTCTAGCCAAGTAGA 2333
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2334 AGGCCTGTCCAGTCCTGCCAAGAAGAAAAGAACATCTAGTCCAACAAAGAATGGTTCTGATAACTGGAATGGTG 2407
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2408 GCCAGAGTCTTTCACATCATCCAGTACAGCAAGTTTATTCGTTGTGTTTGACACCACAGAAATTACAGCACTTG 2481
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2482 GAACAACTGCGAGCAAATAGAGATAATTTAAATCCAGCACAGAAGCATCAGCTGGAACAGTTAGAAAGTCAGTT 2555
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2556 TGTCTTAATGCAGCAAATGAGACACAAAGAAGTTGCTCAGGTACGAACTACTGGAATTCATAACGGGGCCATAA 2629
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2630 CTGATTCATCACTGCCTACAAACTCTGTCTCTAATCGACAACCACATGGTGCTCTGACCAGAGTATCTAGCGTC 2703
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2704 TCTCAGCCTGGAGTTCGCCCTGCTTGTGTTGAAAAACTTTTGTCCAGTGGAGCTTTTTCTGCAGGCTGTATTCC 2777
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2778 TTGTGGCACATCAAAAATTCTAGGAAGTACAGACACTATCTTGCTAGGCAGTAATTGTATAGCAGGAAGTGAAA 2851
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2852 GTAATGGAAATGTGCCTTACCTGCAGCAAAATACACACACTCTACCTCATAATCATACAGACCTGAACAGCAGC 2925
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2926 ACAGAAGAGCCATGGAGAAAACAGCTATCTAACTCCGCTCAGGAATCCAGGTAAAAATGGCTTGTCTAATAGCT 2999
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3000 GCATTTTGTTAGATAAATGTCCACCTCCAAGACCACCAACTTCACCATACCCACCCTTGCCAAAGGACAAGTTG 3073
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3074 AATCCACCCACACCTAGTATTTACTTGGAAAATAAACGTGATGCTTTCTTTCCTCCATTACATCAATTTTGTAC 3147
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3148 AAATCCAAAAAACCCTGTTACAGTAATACGTGGCCTTGCTGGAGCTCTTAAATTAGATCTTGGACTTTTCTCTA 3221
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3222 CCAAAACTTTGGTAGAAGCTAACAATGAACATATGGTAGAAGTGAGGACACAGTTGCTGCAACCAGCAGATGAA 3295
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3296 AACTGGGATCCCACTGGAACAAAGAAAATCTGGCGTTGTGAAAGCAATAGATCTCATACTACAATTGCCAAATA 3369
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3370 CGCACAATACCAGGCTTCCTCCTTCCAGGAATCATTGAGAGAAGAAAATGAGAAAAGAACACAACACAAAGATC 3443
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3444 ATTCAGATAACGAATCCACATCTTCAGAGAATTCTGGAAGGAGAAGGAAAGGACCTTTTAAAACCATAAAATTT 3517
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3518 GGGACCAACATTGACCTCTCTGATAACAAAAAGTGGAAGTTGCAGTTACATGAACTGACTAAACTTCCTGCTTT 3591
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3592 TGCGCGTGTGGTGTCAGCAGGAAATCTTCTAACCCATGTTGGGCATACCATTCTGGGCATGAATACAGTACAAC 3665
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3666 TGTATATGAAAGTTCCAGGGAGTCGGACACCAGGTCACCAAGAAAATAACAACTTCTGCTCTGTTAACATAAAT 3739
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3740 ATTGGTCCAGGAGATTGTGAATGGTTTGTTGTACCTGAAGATTATTGGGGTGTTCTGAATGACTTCTGTGAAAA 3813
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3814 AAATAATTTGAATTTTTTAATGAGTTCTTGGTGGCCCAACCTTGAAGATCTTTATGAAGCAAATGTCCCTGTGT 3887
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3888 ATAGATTTATTCAGCGACCTGGAGATTTGGTCTGGATAAATGCAGGCACTGTGCATTGGGTTCAAGCTGTTGGC 3961
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3962 TGGTGCAATAACATTGCCTGGAATGTTGGTCCACTTACAGCCTGCCAGTATAAATTGGCAGTGGAACGGTATGA 4035
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4036 ATGGAACAAATTGAAAAGTGTGAAGTCACCAGTACCCATGGTGCATCTTTCCTGGAATATGGCACGAAATATCA 4109
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4110 AAGTCTCAGATCCAAAGCTTTTTGAAATGATTAAGTATTGTCTTTTGAAAATTCTGAAGCAATATCAGACATTG 4183
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4184 AGAGAAGCTCTTGTTGCAGCAGGAAAAGAGGTTATATGGCATGGGCGGACAAATGATGAACCAGCTCATTACTG 4257
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4258 TAGCATTTGTGAGGTGGAGGTTTTTAATCTGCTTTTTGTCACTAATGAAAGCAATACTCAAAAAACCTACATAG 4331
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4332 TACATTGCCATGATTGTGCACGAAAAACAAGCAAAAGTTTGGAAAATTTTGTGGTGCTCGAACAGTACAAAATG 4405
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4406 GAGGACCTAATCCAAGTTTATGATCAATTTACACTAGCTCTTTCATTATCATCCTCATCTTGATATAGTTCCAT 4479
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4480 GAATATTAAATGAGATTATTTCTGCTCTTCAGGAAATTTCTGCACCACTGGTTTTGTAGCTGTTTCATAAAACT 4553
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4554 GTTGACTAAAAGCTATGTCTATGCAACCTTCCAAGAATAGTATGTCAAGCAACTGGACACAGTGCTGCCTCTGC 4627
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4628 TTCAGGACTTAACATGCTGATCCAGCTGTACTTCAGAAAAATAATATTAATCATATGTTTTGTGTACGTATGAC 4701
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4702 AAACTGTCAAAGTGACACAGAATACTGATTTGAAGATAGCCTTTTTTATGTTTCTCTATTTCTGGGCTGATGAA 4775
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4776 TTAATATTCATTTGTATTTTAACCCTGCAGAATTTTCCTTAGTTAAAAACACTTTCCTAGCTGGTCATTTCTTC 4849
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4850 ATAAGATAGCAAATTTAAATCTCTCCTCGATCAGCTTTTAAAAAATGTGTACTATTATCTGAGGAAGTTTTTTA 4923
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4924 CTGCTTTATGTTTTTGTGTGTTTTGAGGCCATGATGATTACATTTGTGGTTCCAAAATAATTTTTTTAAATATT 4997
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4998 AATAGCCCATATACAAAGATAATGGATTGCACATAGACAAAGAAATAAACTTCAGATTTGTGATTTTTGTTTCT 5071
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5072 AAACTTGATACAGATTTACACTATTTATAAATACGTATTTATTGCCTGAAAATATTTGTGAATGGAATGTTGTT 5145
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5146 TTTTTCCAGACGTAACTGCCATTAAATACTAAGGAGTTCTGTAGTTTTAAACACTACTCCTATTACATTTTATA 5219
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5220 TGTGTAGATAAAACTGCTTAGTATTATACAGAAATTTTTATTAAAATTGTTAAATGTTTAAAGGGTTTCCCAAT 5293
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5294 GTTTGAGTTTAAAAAAGACTTTCTGAAAAAATCCACTTTTTGTTCATTTTCAAACCTAATGATTATATGTATTT 5367
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5368 TATATGTGTGTGTATGTGTACACACATGTATAATATATACAGAAACCTCGATATATAATTGTATAGATTTTAAA 5441
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5442 AGTTTTATTTTTTACATCTATGGTAGTTTTTGAGGTGCCTATTATAAAGTATTACGGAAGTTTGCTGTTTTTAA 5515
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5516 AGTAAATGTCTTTTAGTGTGATTTATTAAGTTGTAGTCACCATAGTGATAGCCCATAAATAATTGCTGGAAAAT 5589
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5590 TGTATTTTATAACAGTAGAAAACATATAGTCAGTGAAGTAAATATTTTAAAGGAAACATTATATAGATTTGATA 5663
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5664 AATGTTGTTTATAATTAAGAGTTTCTTATGGAAAAGAGATTCAGAATGATAACCTCTTTTAGAGAACAAATAAG 5737
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5738 TGACTTATTTTTTTAAAGCTAGATGACTTTGAAATGCTATACTGTCCTGCTTGTACAACATGGTTTGGGGTGAA 5811
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5812 GGGGAGGAAAGTATTAAAAAATCTATATCGCTAGTAAATTGTAATAAGTTCTATTAAAACTTGTATTTCATATG 5885
Query 472 ------------------------------------------------------------ 471
Sbjct 5886 AAAAATTTGCTAATTTAATATTAACTCATTTGATAATAATACTTGTCTTTTCTACCTCTC 5945
