Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11214
- Subject:
- NR_047624.1
- Aligned Length:
- 6780
- Identities:
- 406
- Gaps:
- 6328
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTCATCGTTTGTTGTTTAGATAATATCATGAACTGATAAATGCAGTTGCCACGTTGATTCCCTAGGGCCTGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTACCGACTGAGGTCATAAGATATTATGCCTTCTCTTTAGACTTGGTCAGTGGAGAGGAAATGGGCAAAGAACC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCCTATGGAGGTGACAAGGCCTTAGGGCCAAAAGTCTTGAGGGTGAAGGTTTAGGGCCTGCGCAGCTTCCCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCATGCCCCGCAAGGTCTCGCATTCGCAAGGCTTGTGACAGTGGGAGCCTCATTACGGACTCTCCTAAAGTCCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTGTCCTCTTTTCGCATTTGCGCCCCGTGGGTGATGCCCGATGCCGCCCTTCCCATCGCTCTCTTCCCCTTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGCGTATCGCAACTGCAAAAACACCCAGCACAGACACTCCATTTTCTATCTTAATGCATTTAACTAGCACAAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTACAGGTTGTTCCATCCCAGAGACTACCCTTTTCTCCATAGACGTGACCATCAACCAACCAGCGGTCAGAATC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGTCAGCCTCTGTCATGTTCCTAGGTCCTTGGCGAACTGGCTGGGCGGGGTCCCAGCAGCCTAGGAGTACAGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAGCAATGCCTGACGTAAGTCAACAAAGATCACGTGAGACGAATCAGTCGCCTAGATTGGCTACAACTAAGTGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTGGGAGCGGGGAGGTCGCGGCGGCTGCGTGGGGTTCGCCCGTGACACAATTACAACTTTGTGCTGGTGCTGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAAGTTTGTGATTTTAAGAAATTCTGCTGTGCTCTCCAGCACTGCGAGCTTCTGCCTTCCCTGTAGTTTCCCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGTGATCCAGGTAGCCGAGTTCCGCTGCCCGTGCTTCGGTAGCTTAAGTCTTTGCCTCAGCTTTTTTCCTTGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCCGCTGAGGAGGCGATAAAATTGGCGTCACAGTCTCAAGCAGCGATTGAAGGCGTCTTTTCAACTACTCGAT 962
Query 1 -------------------------------------------ATGAAATCGTGCGCAGTGTCGCTCACTACCG 31
||||||||.||||||||||||||||||||||
Sbjct 963 TAAGGTTGGGTATCGTCGTGGGACTTGGAAATTTGTTGTTTCCATGAAATCCTGCGCAGTGTCGCTCACTACCG 1036
Query 32 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 1110
Query 106 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 1184
Query 180 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGG---------------------------TAAAAGC-- 224
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1185 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGGCTGTTCGCTGCTACGAATCTTTAATCTTAAAAGCTG 1258
Query 225 AACCAGACGCAAAG------------TCTTT---------GGTCCGCACTT----------------------- 254
| |.|.|||| ||||| ||| |||||
Sbjct 1259 A-----AGGAAAAGTGGAGTCTGACTTCTTTTGCCAATTAGGT---CACTTCAACCTCTTGTTGGAAGATTATT 1324
Query 255 -------------TGC------------------TCTACCAAGGC----------------CCCGCGTTCCT-T 280
||| |.||| |||| .|.|||||..| |
Sbjct 1325 CAAAAGCATTATCTGCATATCAGAGATATTACAGTTTAC--AGGCTGACTACTGGAAGAATGCTGCGTTTTTAT 1396
Query 281 ACCGCC----------------------CA--------------GCCAGTA------------------TTTAT 300
|..||| || ||.|.|| |||||
Sbjct 1397 ATGGCCTTGGTTTGGTCTACTTCTACTACAATGCATTTCATTGGGCAATTAAAGCATTTCAAGATGTCCTTTAT 1470
Query 301 TTTG------GCTCTGCTCCATGGCCAAGG-----------------GGTCGGA-----AAAGTG--------- 337
.||| |||.|..||.| ||||||| ||.|..| ||||||
Sbjct 1471 GTTGACCCCAGCTTTTGTCGA--GCCAAGGAAATTCATTTACGACTTGGGCTCATGTTCAAAGTGAACACAGAC 1542
Query 338 --------------------TTTCTTGCCTTTGCTGTCCCC-------------GTAC----TCTGGAATACTT 374
||...|||..|.|||.|.|.| |||| ..||||||.|.|
Sbjct 1543 TACAAGTCTAGTTTAAAGGATTGAGTGCAGTGGCTATTCACAGGCATAATCATAGTACAACGCGTGGAATTCCT 1616
Query 375 CGCC---------CCTTGC-TC-CAGACTCCC------TT----CTAC------------TCTG---------- 405
.||| ||||.| || ||||||||| || |||| |.||
Sbjct 1617 GGCCCAAAGTGATCCTTCCATCTCAGACTCCCAAGCAGTTGGGACTACAGGAGTGTACAATATGGGCTGCCGTG 1690
Query 406 ------------AGGAA----AAA-------AAAAAT---------------CGGAC--------GCTTTGGGA 433
||||| ||| |.|||| .|||| ||..|||||
Sbjct 1691 AGATGTAACCAAAGGAACAGTAAATTTATAGAGAAATGACAAGACAAAGGGAAGGACTTGAAGTTGCCATGGGA 1764
Query 434 CCGGGCTAAACCG-GGTCTACACCA----CA------------TGCCTGT--------TACTT----------- 471
.|| |||..| || |.|.|| || ||.|||| |||||
Sbjct 1765 ---AGC-AAATTGTGG---AAAGCATTTTCAGTTAGCCTTGATTGACTGTAATCCATGTACTTTGTCCAATGCT 1831
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1832 GAAATTCAATTTCATATTGCCCATTTGTATGAAACCCAGAGGAAGTATCATTCTGCAAAGGAGGCATATGAACA 1905
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1906 ACTTTTGCAGACAGAAAACCTTCCTGCACAAGTAAAAGCAACTGTATTGCAACAGTTAGGTTGGATGCATCATA 1979
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1980 ATATGGATCTAGTAGGAGACAAAGCCACAAAGGAAAGCTATGCTATTCAGTATCTCCAAAAGTCTTTGGAGGCA 2053
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2054 GATCCTAATTCTGGCCAATCGTGGTATTTTCTTGGAAGGTGTTATTCAAGTATTGGGAAAGTTCAGGATGCCTT 2127
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2128 TATATCTTACAGGCAATCTATTGATAAATCAGAAGCAAGTGCAGATACATGGTGTTCAATAGGTGTGTTGTATC 2201
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2202 AGCAGCAAAATCAGCCTATGGATGCTTTACAGGCATATATTTGTGCTGTACAATTGGACCATGGGCATGCCGCA 2275
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2276 GCCTGGATGGACCTAGGTACTCTCTATGAATCCTGCAATCAACCTCAAGATGCCATTAAATGCTACCTAAATGC 2349
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2350 AGCTAGAAGCAAACGTTGTAGTAATACCTCTACGCTTGCTGCAAGAATTAAATTTCTACAGAATGGTTCTGATA 2423
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2424 ACTGGAATGGTGGCCAGAGTCTTTCACATCATCCAGTACAGCAAGTTTATTCGTTGTGTTTGACACCACAGAAA 2497
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2498 TTACAGCACTTGGAACAACTGCGAGCAAATAGAGATAATTTAAATCCAGCACAGAAGCATCAGCTGGAACAGTT 2571
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2572 AGAAAGTCAGTTTGTCTTAATGCAGCAAATGAGACACAAAGAAGTTGCTCAGGTACGAACTACTGGAATTCATA 2645
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2646 ACGGGGCCATAACTGATTCATCACTGCCTACAAACTCTGTCTCTAATCGACAACCACATGGTGCTCTGACCAGA 2719
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2720 GTATCTAGCGTCTCTCAGCCTGGAGTTCGCCCTGCTTGTGTTGAAAAACTTTTGTCCAGTGGAGCTTTTTCTGC 2793
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2794 AGGCTGTATTCCTTGTGGCACATCAAAAATTCTAGGAAGTACAGACACTATCTTGCTAGGCAGTAATTGTATAG 2867
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2868 CAGGAAGTGAAAGTAATGGAAATGTGCCTTACCTGCAGCAAAATACACACACTCTACCTCATAATCATACAGAC 2941
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2942 CTGAACAGCAGCACAGAAGAGCCATGGAGAAAACAGCTATCTAACTCCGCTCAGGGGCTTCATAAAAGTCAGAG 3015
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3016 TTCATGTTTGTCAGGACCTAATGAAGAACAACCTCTGTTTTCCACTGGGTCAGCCCAGTATCACCAGGCAACTA 3089
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3090 GCACTGGTATTAAGAAGGCGAATGAACATCTCACTCTGCCTAGTAATTCAGTACCACAGGGGGATGCTGACAGT 3163
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3164 CACCTCTCCTGTCATACTGCTACCTCAGGTGGACAACAAGGCATTATGTTTACCAAAGAGAGCAAGCCTTCAAA 3237
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3238 AAATAGATCCTTGGTGCCTGAAACAAGCAGGCATACTGGAGACACATCTAATGGCTGTGCTGATGTCAAGGGAC 3311
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3312 TTTCTAATCATGTTCATCAGTTGATAGCAGATGCTGTTTCCAGTCCTAACCATGGAGATTCACCAAATTTATTA 3385
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3386 ATTGCAGACAATCCTCAGCTCTCTGCTTTGTTGATTGGAAAAGCCAATGGCAATGTGGGTACTGGAACCTGTGA 3459
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3460 CAAAGTGAATAATATTCACCCAGCTGTTCATACAAAGACTGATCATTCTGTTGCCTCTTCACCCTCTTCAGCCA 3533
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3534 TTTCCACAGCAACACCTTCTCCTAAATCCACTGAGCAGAGAAGCATAAACAGTGTTACCAGCCTTAACAGTCCT 3607
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3608 CACAGTGGATTACACACAGTCAATGGAGAGGGGCTGGGGAAGTCACAGAGCTCTACAAAAGTAGACCTGCCTTT 3681
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3682 AGCTAGCCACAGATCTACTTCTCAGATCTTACCATCAATGTCAGTGTCTATATGCCCCAGTTCAACAGAAGTTC 3755
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3756 TGAAAGCATGCAGGAATCCAGGTAAAAATGGCTTGTCTAATAGCTGCATTTTGTTAGATAAATGTCCACCTCCA 3829
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3830 AGACCACCAACTTCACCATACCCACCCTTGCCAAAGGACAAGTTGAATCCACCCACACCTAGTATTTACTTGGA 3903
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3904 AAATAAACGTGATGCTTTCTTTCCTCCATTACATCAATTTTGTACAAATCCAAAAAACCCTGTTACAGTAATAC 3977
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3978 GTGGCCTTGCTGGAGCTCTTAAATTAGATCTTGGACTTTTCTCTACCAAAACTTTGGTAGAAGCTAACAATGAA 4051
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4052 CATATGGTAGAAGTGAGGACACAGTTGCTGCAACCAGCAGATGAAAACTGGGATCCCACTGGAACAAAGAAAAT 4125
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4126 CTGGCGTTGTGAAAGCAATAGATCTCATACTACAATTGCCAAATACGCACAATACCAGGCTTCCTCCTTCCAGG 4199
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4200 AATCATTGAGAGAAGAAAATGAGAAAAGAACACAACACAAAGATCATTCAGATAACGAATCCACATCTTCAGAG 4273
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4274 AATTCTGGAAGGAGAAGGAAAGGACCTTTTAAAACCATAAAATTTGGGACCAACATTGACCTCTCTGATAACAA 4347
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4348 AAAGTGGAAGTTGCAGTTACATGAACTGACTAAACTTCCTGCTTTTGCGCGTGTGGTGTCAGCAGGAAATCTTC 4421
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4422 TAACCCATGTTGGGCATACCATTCTGGGCATGAATACAGTACAACTGTATATGAAAGTTCCAGGGAGTCGGACA 4495
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4496 CCAGGTCACCAAGAAAATAACAACTTCTGCTCTGTTAACATAAATATTGGTCCAGGAGATTGTGAATGGTTTGT 4569
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4570 TGTACCTGAAGATTATTGGGGTGTTCTGAATGACTTCTGTGAAAAAAATAATTTGAATTTTTTAATGAGTTCTT 4643
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4644 GGTGGCCCAACCTTGAAGATCTTTATGAAGCAAATGTCCCTGTGTATAGATTTATTCAGCGACCTGGAGATTTG 4717
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4718 GTCTGGATAAATGCAGGCACTGTGCATTGGGTTCAAGCTGTTGGCTGGTGCAATAACATTGCCTGGAATGTTGG 4791
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4792 TCCACTTACAGCCTGCCAGTATAAATTGGCAGTGGAACGGTATGAATGGAACAAATTGAAAAGTGTGAAGTCAC 4865
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4866 CAGTACCCATGGTGCATCTTTCCTGGAATATGGCACGAAATATCAAAGTCTCAGATCCAAAGCTTTTTGAAATG 4939
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4940 ATTAAGTATTGTCTTTTGAAAATTCTGAAGCAATATCAGACATTGAGAGAAGCTCTTGTTGCAGCAGGAAAAGA 5013
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5014 GGTTATATGGCATGGGCGGACAAATGATGAACCAGCTCATTACTGTAGCATTTGTGAGGTGGAGGTTTTTAATC 5087
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5088 TGCTTTTTGTCACTAATGAAAGCAATACTCAAAAAACCTACATAGTACATTGCCATGATTGTGCACGAAAAACA 5161
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5162 AGCAAAAGTTTGGAAAATTTTGTGGTGCTCGAACAGTACAAAATGGAGGACCTAATCCAAGTTTATGATCAATT 5235
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5236 TACACTAGTAAGTCATTAACACGCTCTTTCATTATCATCCTCATCTTGATATAGTTCCATGAATATTAAATGAG 5309
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5310 ATTATTTCTGCTCTTCAGGAAATTTCTGCACCACTGGTTTTGTAGCTGTTTCATAAAACTGTTGACTAAAAGCT 5383
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5384 ATGTCTATGCAACCTTCCAAGAATAGTATGTCAAGCAACTGGACACAGTGCTGCCTCTGCTTCAGGACTTAACA 5457
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5458 TGCTGATCCAGCTGTACTTCAGAAAAATAATATTAATCATATGTTTTGTGTACGTATGACAAACTGTCAAAGTG 5531
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5532 ACACAGAATACTGATTTGAAGATAGCCTTTTTTATGTTTCTCTATTTCTGGGCTGATGAATTAATATTCATTTG 5605
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5606 TATTTTAACCCTGCAGAATTTTCCTTAGTTAAAAACACTTTCCTAGCTGGTCATTTCTTCATAAGATAGCAAAT 5679
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5680 TTAAATCTCTCCTCGATCAGCTTTTAAAAAATGTGTACTATTATCTGAGGAAGTTTTTTACTGCTTTATGTTTT 5753
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5754 TGTGTGTTTTGAGGCCATGATGATTACATTTGTGGTTCCAAAATAATTTTTTTAAATATTAATAGCCCATATAC 5827
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5828 AAAGATAATGGATTGCACATAGACAAAGAAATAAACTTCAGATTTGTGATTTTTGTTTCTAAACTTGATACAGA 5901
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5902 TTTACACTATTTATAAATACGTATTTATTGCCTGAAAATATTTGTGAATGGAATGTTGTTTTTTTCCAGACGTA 5975
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5976 ACTGCCATTAAATACTAAGGAGTTCTGTAGTTTTAAACACTACTCCTATTACATTTTATATGTGTAGATAAAAC 6049
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6050 TGCTTAGTATTATACAGAAATTTTTATTAAAATTGTTAAATGTTTAAAGGGTTTCCCAATGTTTGAGTTTAAAA 6123
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6124 AAGACTTTCTGAAAAAATCCACTTTTTGTTCATTTTCAAACCTAATGATTATATGTATTTTATATGTGTGTGTA 6197
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6198 TGTGTACACACATGTATAATATATACAGAAACCTCGATATATAATTGTATAGATTTTAAAAGTTTTATTTTTTA 6271
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6272 CATCTATGGTAGTTTTTGAGGTGCCTATTATAAAGTATTACGGAAGTTTGCTGTTTTTAAAGTAAATGTCTTTT 6345
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6346 AGTGTGATTTATTAAGTTGTAGTCACCATAGTGATAGCCCATAAATAATTGCTGGAAAATTGTATTTTATAACA 6419
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6420 GTAGAAAACATATAGTCAGTGAAGTAAATATTTTAAAGGAAACATTATATAGATTTGATAAATGTTGTTTATAA 6493
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6494 TTAAGAGTTTCTTATGGAAAAGAGATTCAGAATGATAACCTCTTTTAGAGAACAAATAAGTGACTTATTTTTTT 6567
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6568 AAAGCTAGATGACTTTGAAATGCTATACTGTCCTGCTTGTACAACATGGTTTGGGGTGAAGGGGAGGAAAGTAT 6641
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6642 TAAAAAATCTATATCGCTAGTAAATTGTAATAAGTTCTATTAAAACTTGTATTTCATATGAAAAATTTGCTAAT 6715
Query 472 ---------------------------------------------- 471
Sbjct 6716 TTAATATTAACTCATTTGATAATAATACTTGTCTTTTCTACCTCTC 6761
