Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11214
- Subject:
- NR_047625.1
- Aligned Length:
- 5676
- Identities:
- 397
- Gaps:
- 5240
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTCATCGTTTGTTGTTTAGATAATATCATGAACTGATAAATGCAGTTGCCACGTTGATTCCCTAGGGCCTGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTACCGACTGAGGTCATAAGATATTATGCCTTCTCTTTAGACTTGGTCAGTGGAGAGGAAATGGGCAAAGAACC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCCTATGGAGGTGACAAGGCCTTAGGGCCAAAAGTCTTGAGGGTGAAGGTTTAGGGCCTGCGCAGCTTCCCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCATGCCCCGCAAGGTCTCGCATTCGCAAGGCTTGTGACAGTGGGAGCCTCATTACGGACTCTCCTAAAGTCCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTGTCCTCTTTTCGCATTTGCGCCCCGTGGGTGATGCCCGATGCCGCCCTTCCCATCGCTCTCTTCCCCTTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGCGTATCGCAACTGCAAAAACACCCAGCACAGACACTCCATTTTCTATCTTAATGCATTTAACTAGCACAAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTACAGGTTGTTCCATCCCAGAGACTACCCTTTTCTCCATAGACGTGACCATCAACCAACCAGCGGTCAGAATC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGTCAGCCTCTGTCATGTTCCTAGGTCCTTGGCGAACTGGCTGGGCGGGGTCCCAGCAGCCTAGGAGTACAGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAGCAATGCCTGACGTAAGTCAACAAAGATCACGTGAGACGAATCAGTCGCCTAGATTGGCTACAACTAAGTGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTGGGAGCGGGGAGGTCGCGGCGGCTGCGTGGGGTTCGCCCGTGACACAATTACAACTTTGTGCTGGTGCTGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAAGTTTGTGATTTTAAGAAATTCTGCTGTGCTCTCCAGCACTGCGAGCTTCTGCCTTCCCTGTAGTTTCCCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGTGATCCAGGTAGCCGAGTTCCGCTGCCCGTGCTTCGGTAGCTTAAGTCTTTGCCTCAGCTTTTTTCCTTGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCCGCTGAGGAGGCGATAAAATTGGCGTCACAGTCTCAAGCAGCGATTGAAGGCGTCTTTTCAACTACTCGAT 962
Query 1 -------------------------------------------ATGAAATCGTGCGCAGTGTCGCTCACTACCG 31
||||||||.||||||||||||||||||||||
Sbjct 963 TAAGGTTGGGTATCGTCGTGGGACTTGGAAATTTGTTGTTTCCATGAAATCCTGCGCAGTGTCGCTCACTACCG 1036
Query 32 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 1110
Query 106 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 1184
Query 180 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGG---------------------------TAAAAGC-- 224
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1185 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGGCTGTTCGCTGCTACGAATCTTTAATCTTAAAAGCTG 1258
Query 225 AACCAGACGCAAAG------------TCTTT---------GGTCCGCACTT----------------------- 254
| |.|.|||| ||||| ||| |||||
Sbjct 1259 A-----AGGAAAAGTGGAGTCTGACTTCTTTTGCCAATTAGGT---CACTTCAACCTCTTGTTGGAAGATTATT 1324
Query 255 -------------TGC------------------TCTACCAAGGC----------------CCCGCGTTCCT-T 280
||| |.||| |||| .|.|||||..| |
Sbjct 1325 CAAAAGCATTATCTGCATATCAGAGATATTACAGTTTAC--AGGCTGACTACTGGAAGAATGCTGCGTTTTTAT 1396
Query 281 ACCGCC----------------------CA--------------GCCAGTA------------------TTTAT 300
|..||| || ||.|.|| |||||
Sbjct 1397 ATGGCCTTGGTTTGGTCTACTTCTACTACAATGCATTTCATTGGGCAATTAAAGCATTTCAAGATGTCCTTTAT 1470
Query 301 TTTG------GCTCTGCTCCATGGCCAAGG-----------------GGTCGGA-----AAAGTG--------- 337
.||| |||.|..||.| ||||||| ||.|..| ||||||
Sbjct 1471 GTTGACCCCAGCTTTTGTCGA--GCCAAGGAAATTCATTTACGACTTGGGCTCATGTTCAAAGTGAACACAGAC 1542
Query 338 ---------------------TTTC---TTGCCT---TTG-CTG---TCCCCGTACT----------CTGGAAT 370
|||| |.|||| ||| ||| |||..||||| |||.|||
Sbjct 1543 TACAAGTCTAGTTTAAAGCATTTTCAGTTAGCCTTGATTGACTGTAATCCATGTACTTTGTCCAATGCTGAAAT 1616
Query 371 ---ACTTC-----GCCCCTTGCT-------CCAGA------CTCCCTTCTACTCTG---AGGA--------AAA 412
|.||| ||||.||..| ||||| .|| |.|||| |||| ||.
Sbjct 1617 TCAATTTCATATTGCCCATTTGTATGAAACCCAGAGGAAGTATC------ATTCTGCAAAGGAGGCATATGAAC 1684
Query 413 AAAAAATCGGACGCTTTGG--GACCGGGCTAAACCGGGT--CTACACCA-------CA-------TGC--CTGT 466
|| ||||.| |||.| .||||| | ||.|||.| || ||| |.||
Sbjct 1685 AA-----------CTTTTGCAGACAG---AAAACC---TTCCTGCACAAGTAAAAGCAACTGTATTGCAACAGT 1741
Query 467 TACTT--------------------------------------------------------------------- 471
||..|
Sbjct 1742 TAGGTGTTATTCAAGTATTGGGAAAGTTCAGGATGCCTTTATATCTTACAGGCAATCTATTGATAAATCAGAAG 1815
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1816 CAAGTGCAGATACATGGTGTTCAATAGGTGTGTTGTATCAGCAGCAAAATCAGCCTATGGATGCTTTACAGGCA 1889
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1890 TATATTTGTGCTGTACAATTGGACCATGGGCATGCCGCAGCCTGGATGGACCTAGGTACTCTCTATGAATCCTG 1963
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1964 CAATCAACCTCAAGATGCCATTAAATGCTACCTAAATGCAGCTAGAAGCAAACGTTGTAGTAATACCTCTACGC 2037
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2038 TTGCTGCAAGAATTAAATTTCTACAGAATGGTTCTGATAACTGGAATGGTGGCCAGAGTCTTTCACATCATCCA 2111
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2112 GTACAGCAAGTTTATTCGTTGTGTTTGACACCACAGAAATTACAGCACTTGGAACAACTGCGAGCAAATAGAGA 2185
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2186 TAATTTAAATCCAGCACAGAAGCATCAGCTGGAACAGTTAGAAAGTCAGTTTGTCTTAATGCAGCAAATGAGAC 2259
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2260 ACAAAGAAGTTGCTCAGGTACGAACTACTGGAATTCATAACGGGGCCATAACTGATTCATCACTGCCTACAAAC 2333
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2334 TCTGTCTCTAATCGACAACCACATGGTGCTCTGACCAGAGTATCTAGCGTCTCTCAGCCTGGAGTTCGCCCTGC 2407
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2408 TTGTGTTGAAAAACTTTTGTCCAGTGGAGCTTTTTCTGCAGGCTGTATTCCTTGTGGCACATCAAAAATTCTAG 2481
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2482 GAAGTACAGACACTATCTTGCTAGGCAGTAATTGTATAGCAGGAAGTGAAAGTAATGGAAATGTGCCTTACCTG 2555
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2556 CAGCAAAATACACACACTCTACCTCATAATCATACAGACCTGAACAGCAGCACAGAAGAGCCATGGAGAAAACA 2629
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2630 GCTATCTAACTCCGCTCAGGAATCCAGGTAAAAATGGCTTGTCTAATAGCTGCATTTTGTTAGATAAATGTCCA 2703
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2704 CCTCCAAGACCACCAACTTCACCATACCCACCCTTGCCAAAGGACAAGTTGAATCCACCCACACCTAGTATTTA 2777
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2778 CTTGGAAAATAAACGTGATGCTTTCTTTCCTCCATTACATCAATTTTGTACAAATCCAAAAAACCCTGTTACAG 2851
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2852 TAATACGTGGCCTTGCTGGAGCTCTTAAATTAGATCTTGGACTTTTCTCTACCAAAACTTTGGTAGAAGCTAAC 2925
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2926 AATGAACATATGGTAGAAGTGAGGACACAGTTGCTGCAACCAGCAGATGAAAACTGGGATCCCACTGGAACAAA 2999
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3000 GAAAATCTGGCGTTGTGAAAGCAATAGATCTCATACTACAATTGCCAAATACGCACAATACCAGGCTTCCTCCT 3073
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3074 TCCAGGAATCATTGAGAGAAGAAAATGAGAAAAGAACACAACACAAAGATCATTCAGATAACGAATCCACATCT 3147
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3148 TCAGAGAATTCTGGAAGGAGAAGGAAAGGACCTTTTAAAACCATAAAATTTGGGACCAACATTGACCTCTCTGA 3221
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3222 TAACAAAAAGTGGAAGTTGCAGTTACATGAACTGACTAAACTTCCTGCTTTTGCGCGTGTGGTGTCAGCAGGAA 3295
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3296 ATCTTCTAACCCATGTTGGGCATACCATTCTGGGCATGAATACAGTACAACTGTATATGAAAGTTCCAGGGAGT 3369
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3370 CGGACACCAGGTCACCAAGAAAATAACAACTTCTGCTCTGTTAACATAAATATTGGTCCAGGAGATTGTGAATG 3443
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3444 GTTTGTTGTACCTGAAGATTATTGGGGTGTTCTGAATGACTTCTGTGAAAAAAATAATTTGAATTTTTTAATGA 3517
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3518 GTTCTTGGTGGCCCAACCTTGAAGATCTTTATGAAGCAAATGTCCCTGTGTATAGATTTATTCAGCGACCTGGA 3591
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3592 GATTTGGTCTGGATAAATGCAGGCACTGTGCATTGGGTTCAAGCTGTTGGCTGGTGCAATAACATTGCCTGGAA 3665
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3666 TGTTGGTCCACTTACAGCCTGCCAGTATAAATTGGCAGTGGAACGGTATGAATGGAACAAATTGAAAAGTGTGA 3739
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3740 AGTCACCAGTACCCATGGTGCATCTTTCCTGGAATATGGCACGAAATATCAAAGTCTCAGATCCAAAGCTTTTT 3813
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3814 GAAATGATTAAGTATTGTCTTTTGAAAATTCTGAAGCAATATCAGACATTGAGAGAAGCTCTTGTTGCAGCAGG 3887
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3888 AAAAGAGGTTATATGGCATGGGCGGACAAATGATGAACCAGCTCATTACTGTAGCATTTGTGAGGTGGAGGTTT 3961
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3962 TTAATCTGCTTTTTGTCACTAATGAAAGCAATACTCAAAAAACCTACATAGTACATTGCCATGATTGTGCACGA 4035
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4036 AAAACAAGCAAAAGTTTGGAAAATTTTGTGGTGCTCGAACAGTACAAAATGGAGGACCTAATCCAAGTTTATGA 4109
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4110 TCAATTTACACTAGTAAGTCATTAACACGCTCTTTCATTATCATCCTCATCTTGATATAGTTCCATGAATATTA 4183
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4184 AATGAGATTATTTCTGCTCTTCAGGAAATTTCTGCACCACTGGTTTTGTAGCTGTTTCATAAAACTGTTGACTA 4257
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4258 AAAGCTATGTCTATGCAACCTTCCAAGAATAGTATGTCAAGCAACTGGACACAGTGCTGCCTCTGCTTCAGGAC 4331
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4332 TTAACATGCTGATCCAGCTGTACTTCAGAAAAATAATATTAATCATATGTTTTGTGTACGTATGACAAACTGTC 4405
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4406 AAAGTGACACAGAATACTGATTTGAAGATAGCCTTTTTTATGTTTCTCTATTTCTGGGCTGATGAATTAATATT 4479
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4480 CATTTGTATTTTAACCCTGCAGAATTTTCCTTAGTTAAAAACACTTTCCTAGCTGGTCATTTCTTCATAAGATA 4553
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4554 GCAAATTTAAATCTCTCCTCGATCAGCTTTTAAAAAATGTGTACTATTATCTGAGGAAGTTTTTTACTGCTTTA 4627
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4628 TGTTTTTGTGTGTTTTGAGGCCATGATGATTACATTTGTGGTTCCAAAATAATTTTTTTAAATATTAATAGCCC 4701
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4702 ATATACAAAGATAATGGATTGCACATAGACAAAGAAATAAACTTCAGATTTGTGATTTTTGTTTCTAAACTTGA 4775
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4776 TACAGATTTACACTATTTATAAATACGTATTTATTGCCTGAAAATATTTGTGAATGGAATGTTGTTTTTTTCCA 4849
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4850 GACGTAACTGCCATTAAATACTAAGGAGTTCTGTAGTTTTAAACACTACTCCTATTACATTTTATATGTGTAGA 4923
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4924 TAAAACTGCTTAGTATTATACAGAAATTTTTATTAAAATTGTTAAATGTTTAAAGGGTTTCCCAATGTTTGAGT 4997
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4998 TTAAAAAAGACTTTCTGAAAAAATCCACTTTTTGTTCATTTTCAAACCTAATGATTATATGTATTTTATATGTG 5071
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5072 TGTGTATGTGTACACACATGTATAATATATACAGAAACCTCGATATATAATTGTATAGATTTTAAAAGTTTTAT 5145
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5146 TTTTTACATCTATGGTAGTTTTTGAGGTGCCTATTATAAAGTATTACGGAAGTTTGCTGTTTTTAAAGTAAATG 5219
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5220 TCTTTTAGTGTGATTTATTAAGTTGTAGTCACCATAGTGATAGCCCATAAATAATTGCTGGAAAATTGTATTTT 5293
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5294 ATAACAGTAGAAAACATATAGTCAGTGAAGTAAATATTTTAAAGGAAACATTATATAGATTTGATAAATGTTGT 5367
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5368 TTATAATTAAGAGTTTCTTATGGAAAAGAGATTCAGAATGATAACCTCTTTTAGAGAACAAATAAGTGACTTAT 5441
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5442 TTTTTTAAAGCTAGATGACTTTGAAATGCTATACTGTCCTGCTTGTACAACATGGTTTGGGGTGAAGGGGAGGA 5515
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5516 AAGTATTAAAAAATCTATATCGCTAGTAAATTGTAATAAGTTCTATTAAAACTTGTATTTCATATGAAAAATTT 5589
Query 472 ---------------------------------------------------- 471
Sbjct 5590 GCTAATTTAATATTAACTCATTTGATAATAATACTTGTCTTTTCTACCTCTC 5641
