Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11214
- Subject:
- NR_047627.1
- Aligned Length:
- 5798
- Identities:
- 395
- Gaps:
- 5357
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTCATCGTTTGTTGTTTAGATAATATCATGAACTGATAAATGCAGTTGCCACGTTGATTCCCTAGGGCCTGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTACCGACTGAGGTCATAAGATATTATGCCTTCTCTTTAGACTTGGTCAGTGGAGAGGAAATGGGCAAAGAACC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCCTATGGAGGTGACAAGGCCTTAGGGCCAAAAGTCTTGAGGGTGAAGGTTTAGGGCCTGCGCAGCTTCCCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCATGCCCCGCAAGGTCTCGCATTCGCAAGGCTTGTGACAGTGGGAGCCTCATTACGGACTCTCCTAAAGTCCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTGTCCTCTTTTCGCATTTGCGCCCCGTGGGTGATGCCCGATGCCGCCCTTCCCATCGCTCTCTTCCCCTTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGCGTATCGCAACTGCAAAAACACCCAGCACAGACACTCCATTTTCTATCTTAATGCATTTAACTAGCACAAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTACAGGTTGTTCCATCCCAGAGACTACCCTTTTCTCCATAGACGTGACCATCAACCAACCAGCGGTCAGAATC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGTCAGCCTCTGTCATGTTCCTAGGTCCTTGGCGAACTGGCTGGGCGGGGTCCCAGCAGCCTAGGAGTACAGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAGCAATGCCTGACGTAAGTCAACAAAGATCACGTGAGACGAATCAGTCGCCTAGATTGGCTACAACTAAGTGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTGGGAGCGGGGAGGTCGCGGCGGCTGCGTGGGGTTCGCCCGTGACACAATTACAACTTTGTGCTGGTGCTGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAAGTTTGTGATTTTAAGAAATTCTGCTGTGCTCTCCAGCACTGCGAGCTTCTGCCTTCCCTGTAGTTTCCCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGTGATCCAGGTAGCCGAGTTCCGCTGCCCGTGCTTCGGTAGCTTAAGTCTTTGCCTCAGCTTTTTTCCTTGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCCGCTGAGGAGGCGATAAAATTGGCGTCACAGTCTCAAGCAGCGATTGAAGGCGTCTTTTCAACTACTCGAT 962
Query 1 -------------------------------------------ATGAAATCGTGCGCAGTGTCGCTCACTACCG 31
||||||||.||||||||||||||||||||||
Sbjct 963 TAAGGTTGGGTATCGTCGTGGGACTTGGAAATTTGTTGTTTCCATGAAATCCTGCGCAGTGTCGCTCACTACCG 1036
Query 32 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 1110
Query 106 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 1184
Query 180 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGG---------------------------TAAAAGC-- 224
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1185 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGGCTGTTCGCTGCTACGAATCTTTAATCTTAAAAGCTG 1258
Query 225 AACCAGACGCAAAG------------TCTTT---------GGTCCGCACTTTGCTCTACCAAGGCCCCGCGTT- 276
| |.|.|||| ||||| ||| ||||| ||| ||.|..|||
Sbjct 1259 A-----AGGAAAAGTGGAGTCTGACTTCTTTTGCCAATTAGGT---CACTT--------CAA--CCTCTTGTTG 1314
Query 277 ----------------CCTTACCGCC----CAGCCAG-TATT-TATTTT---GGCT----------------CT 309
|.|||.|..| ||| || |||| .|.||| |||| ||
Sbjct 1315 GAAGATTATTCAAAAGCATTATCTGCATATCAG--AGATATTACAGTTTACAGGCTGACTACTGGAAGAATGCT 1386
Query 310 GC-----TCCATGGCCAAGG---GGTC-------------------------GG-----AAAAGTGTTTC---- 341
|| |..||||||..|| |||| || .||||..||||
Sbjct 1387 GCGTTTTTATATGGCCTTGGTTTGGTCTACTTCTACTACAATGCATTTCATTGGGCAATTAAAGCATTTCAAGA 1460
Query 342 TTGCCTT--TGCTGTCCCCGTA-CTCT-----------GGAA----------TACTTCGCCCCTTGCTC----- 386
|..|||| ||.||.|||| | ||.| |||| .||||.|.|.|.||.||
Sbjct 1461 TGTCCTTTATGTTGACCCC--AGCTTTTGTCGAGCCAAGGAAATTCATTTACGACTTGGGCTCATGTTCAAAGT 1532
Query 387 -----CAGACT----------------------------------------------CCCTTCTACT------- 402
|||||| .||.|.||||
Sbjct 1533 GAACACAGACTACAAGTCTAGTTTAAAGCATTTTCAGTTAGCCTTGATTGACTGTAATCCATGTACTTTGTCCA 1606
Query 403 ---CTGAGGAAAAAAAAAATC----------GGACGC------------TTTG-GGACCGGGCTAAACCGGGT- 449
|||| |||..||..||| |||.|| |||| .|||.| .||||| |
Sbjct 1607 ATGCTGA--AAAGGAAGTATCATTCTGCAAAGGAGGCATATGAACAACTTTTGCAGACAG---AAAACC---TT 1672
Query 450 -CTACACCA-------CA-------TGC--CTGTTACTT----------------------------------- 471
||.|||.| || ||| |.||||..|
Sbjct 1673 CCTGCACAAGTAAAAGCAACTGTATTGCAACAGTTAGGTTGGATGCATCATAATATGGATCTAGTAGGAGACAA 1746
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1747 AGCCACAAAGGAAAGCTATGCTATTCAGTATCTCCAAAAGTCTTTGGAGGCAGATCCTAATTCTGGCCAATCGT 1820
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1821 GGTATTTTCTTGGAAGGTGTTATTCAAGTATTGGGAAAGTTCAGGATGCCTTTATATCTTACAGGCAATCTATT 1894
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1895 GATAAATCAGAAGCAAGTGCAGATACATGGTGTTCAATAGGTGTGTTGTATCAGCAGCAAAATCAGCCTATGGA 1968
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1969 TGCTTTACAGGCATATATTTGTGCTGTACAATTGGACCATGGGCATGCCGCAGCCTGGATGGACCTAGGTACTC 2042
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2043 TCTATGAATCCTGCAATCAACCTCAAGATGCCATTAAATGCTACCTAAATGCAGCTAGAAGCAAACGTTGTAGT 2116
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2117 AATACCTCTACGCTTGCTGCAAGAATTAAATTTCTACAGAATGGTTCTGATAACTGGAATGGTGGCCAGAGTCT 2190
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2191 TTCACATCATCCAGTACAGCAAGTTTATTCGTTGTGTTTGACACCACAGAAATTACAGCACTTGGAACAACTGC 2264
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2265 GAGCAAATAGAGATAATTTAAATCCAGCACAGAAGCATCAGCTGGAACAGTTAGAAAGTCAGTTTGTCTTAATG 2338
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2339 CAGCAAATGAGACACAAAGAAGTTGCTCAGGTACGAACTACTGGAATTCATAACGGGGCCATAACTGATTCATC 2412
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2413 ACTGCCTACAAACTCTGTCTCTAATCGACAACCACATGGTGCTCTGACCAGAGTATCTAGCGTCTCTCAGCCTG 2486
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2487 GAGTTCGCCCTGCTTGTGTTGAAAAACTTTTGTCCAGTGGAGCTTTTTCTGCAGGCTGTATTCCTTGTGGCACA 2560
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2561 TCAAAAATTCTAGGAAGTACAGACACTATCTTGCTAGGCAGTAATTGTATAGCAGGAAGTGAAAGTAATGGAAA 2634
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2635 TGTGCCTTACCTGCAGCAAAATACACACACTCTACCTCATAATCATACAGACCTGAACAGCAGCACAGAAGAGC 2708
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2709 CATGGAGAAAACAGCTATCTAACTCCGCTCAGCCATTTCCACAGCAACACCTTCTCCTAAATCCACTGAGCAGA 2782
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2783 GAAGCATAAACAGTGTTACCAGCCTTAACAGTCCTCACAGTGGATTACACACAGTCAATGGAGAGGGGCTGGGG 2856
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2857 AAGTCACAGAGCTCTACAAAAGTAGACCTGCCTTTAGCTAGCCACAGATCTACTTCTCAGATCTTACCATCAAT 2930
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2931 GTCAGTGTCTATATGCCCCAGTTCAACAGAAGTTCTGAAAGCATGCAGGAATCCAGGTAAAAATGGCTTGTCTA 3004
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3005 ATAGCTGCATTTTGTTAGATAAATGTCCACCTCCAAGACCACCAACTTCACCATACCCACCCTTGCCAAAGGAC 3078
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3079 AAGTTGAATCCACCCACACCTAGTATTTACTTGGAAAATAAACGTGATGCTTTCTTTCCTCCATTACATCAATT 3152
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3153 TTGTACAAATCCAAAAAACCCTGTTACAGTAATACGTGGCCTTGCTGGAGCTCTTAAATTAGATCTTGGACTTT 3226
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3227 TCTCTACCAAAACTTTGGTAGAAGCTAACAATGAACATATGGTAGAAGTGAGGACACAGTTGCTGCAACCAGCA 3300
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3301 GATGAAAACTGGGATCCCACTGGAACAAAGAAAATCTGGCGTTGTGAAAGCAATAGATCTCATACTACAATTGC 3374
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3375 CAAATACGCACAATACCAGGCTTCCTCCTTCCAGGAATCATTGAGAGAAGAAAATGAGAAAAGAACACAACACA 3448
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3449 AAGATCATTCAGATAACGAATCCACATCTTCAGAGAATTCTGGAAGGAGAAGGAAAGGACCTTTTAAAACCATA 3522
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3523 AAATTTGGGACCAACATTGACCTCTCTGATAACAAAAAGTGGAAGTTGCAGTTACATGAACTGACTAAACTTCC 3596
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3597 TGCTTTTGCGCGTGTGGTGTCAGCAGGAAATCTTCTAACCCATGTTGGGCATACCATTCTGGGCATGAATACAG 3670
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3671 TACAACTGTATATGAAAGTTCCAGGGAGTCGGACACCAGGTCACCAAGAAAATAACAACTTCTGCTCTGTTAAC 3744
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3745 ATAAATATTGGTCCAGGAGATTGTGAATGGTTTGTTGTACCTGAAGATTATTGGGGTGTTCTGAATGACTTCTG 3818
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3819 TGAAAACCTGCCAGTATAAATTGGCAGTGGAACGGTATGAATGGAACAAATTGAAAAGTGTGAAGTCACCAGTA 3892
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3893 CCCATGGTGCATCTTTCCTGGAATATGGCACGAAATATCAAAGTCTCAGATCCAAAGCTTTTTGAAATGATTAA 3966
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3967 GTATTGTCTTTTGAAAATTCTGAAGCAATATCAGACATTGAGAGAAGCTCTTGTTGCAGCAGGAAAAGAGGTTA 4040
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4041 TATGGCATGGGCGGACAAATGATGAACCAGCTCATTACTGTAGCATTTGTGAGGTGGAGGTTTTTAATCTGCTT 4114
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4115 TTTGTCACTAATGAAAGCAATACTCAAAAAACCTACATAGTACATTGCCATGATTGTGCACGAAAAACAAGCAA 4188
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4189 AAGTTTGGAAAATTTTGTGGTGCTCGAACAGTACAAAATGGAGGACCTAATCCAAGTTTATGATCAATTTACAC 4262
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4263 TAGCTCTTTCATTATCATCCTCATCTTGATATAGTTCCATGAATATTAAATGAGATTATTTCTGCTCTTCAGGA 4336
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4337 AATTTCTGCACCACTGGTTTTGTAGCTGTTTCATAAAACTGTTGACTAAAAGCTATGTCTATGCAACCTTCCAA 4410
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4411 GAATAGTATGTCAAGCAACTGGACACAGTGCTGCCTCTGCTTCAGGACTTAACATGCTGATCCAGCTGTACTTC 4484
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4485 AGAAAAATAATATTAATCATATGTTTTGTGTACGTATGACAAACTGTCAAAGTGACACAGAATACTGATTTGAA 4558
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4559 GATAGCCTTTTTTATGTTTCTCTATTTCTGGGCTGATGAATTAATATTCATTTGTATTTTAACCCTGCAGAATT 4632
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4633 TTCCTTAGTTAAAAACACTTTCCTAGCTGGTCATTTCTTCATAAGATAGCAAATTTAAATCTCTCCTCGATCAG 4706
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4707 CTTTTAAAAAATGTGTACTATTATCTGAGGAAGTTTTTTACTGCTTTATGTTTTTGTGTGTTTTGAGGCCATGA 4780
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4781 TGATTACATTTGTGGTTCCAAAATAATTTTTTTAAATATTAATAGCCCATATACAAAGATAATGGATTGCACAT 4854
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4855 AGACAAAGAAATAAACTTCAGATTTGTGATTTTTGTTTCTAAACTTGATACAGATTTACACTATTTATAAATAC 4928
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4929 GTATTTATTGCCTGAAAATATTTGTGAATGGAATGTTGTTTTTTTCCAGACGTAACTGCCATTAAATACTAAGG 5002
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5003 AGTTCTGTAGTTTTAAACACTACTCCTATTACATTTTATATGTGTAGATAAAACTGCTTAGTATTATACAGAAA 5076
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5077 TTTTTATTAAAATTGTTAAATGTTTAAAGGGTTTCCCAATGTTTGAGTTTAAAAAAGACTTTCTGAAAAAATCC 5150
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5151 ACTTTTTGTTCATTTTCAAACCTAATGATTATATGTATTTTATATGTGTGTGTATGTGTACACACATGTATAAT 5224
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5225 ATATACAGAAACCTCGATATATAATTGTATAGATTTTAAAAGTTTTATTTTTTACATCTATGGTAGTTTTTGAG 5298
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5299 GTGCCTATTATAAAGTATTACGGAAGTTTGCTGTTTTTAAAGTAAATGTCTTTTAGTGTGATTTATTAAGTTGT 5372
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5373 AGTCACCATAGTGATAGCCCATAAATAATTGCTGGAAAATTGTATTTTATAACAGTAGAAAACATATAGTCAGT 5446
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5447 GAAGTAAATATTTTAAAGGAAACATTATATAGATTTGATAAATGTTGTTTATAATTAAGAGTTTCTTATGGAAA 5520
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5521 AGAGATTCAGAATGATAACCTCTTTTAGAGAACAAATAAGTGACTTATTTTTTTAAAGCTAGATGACTTTGAAA 5594
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5595 TGCTATACTGTCCTGCTTGTACAACATGGTTTGGGGTGAAGGGGAGGAAAGTATTAAAAAATCTATATCGCTAG 5668
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5669 TAAATTGTAATAAGTTCTATTAAAACTTGTATTTCATATGAAAAATTTGCTAATTTAATATTAACTCATTTGAT 5742
Query 472 -------------------------- 471
Sbjct 5743 AATAATACTTGTCTTTTCTACCTCTC 5768
