Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11214
- Subject:
- NR_047632.1
- Aligned Length:
- 6385
- Identities:
- 357
- Gaps:
- 5997
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTCATCGTTTGTTGTTTAGATAATATCATGAACTGATAAATGCAGTTGCCACGTTGATTCCCTAGGGCCTGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTACCGACTGAGGTCATAAGATATTATGCCTTCTCTTTAGACTTGGTCAGTGGAGAGGAAATGGGCAAAGAACC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCCTATGGAGGTGACAAGGCCTTAGGGCCAAAAGTCTTGAGGGTGAAGGTTTAGGGCCTGCGCAGCTTCCCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCATGCCCCGCAAGGTCTCGCATTCGCAAGGCTTGTGACAGTGGGAGCCTCATTACGGACTCTCCTAAAGTCCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTGTCCTCTTTTCGCATTTGCGCCCCGTGGGTGATGCCCGATGCCGCCCTTCCCATCGCTCTCTTCCCCTTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGCGTATCGCAACTGCAAAAACACCCAGCACAGACACTCCATTTTCTATCTTAATGCATTTAACTAGCACAAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTACAGGTTGTTCCATCCCAGAGACTACCCTTTTCTCCATAGACGTGACCATCAACCAACCAGCGGTCAGAATC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGTCAGCCTCTGTCATGTTCCTAGGTCCTTGGCGAACTGGCTGGGCGGGGTCCCAGCAGCCTAGGAGTACAGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAGCAATGCCTGACGTAAGTCAACAAAGATCACGTGAGACGAATCAGTCGCCTAGATTGGCTACAACTAAGTGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTGGGAGCGGGGAGGTCGCGGCGGCTGCGTGGGGTTCGCCCGTGACACAATTACAACTTTGTGCTGGTGCTGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAAGTTTGTGATTTTAAGAAATTCTGCTGTGCTCTCCAGCACTGCGAGCTTCTGCCTTCCCTGTAGTTTCCCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGTGATCCAGGTAGCCGAGTTCCGCTGCCCGTGCTTCGGTAGCTTAAGTCTTTGCCTCAGCTTTTTTCCTTGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCCGCTGAGGAGGCGATAAAATTGGCGTCACAGTCTCAAGCAGCGATTGAAGGCGTCTTTTCAACTACTCGAT 962
Query 1 -------------------------------------------ATGAAATCGTGCGCAGTGTCGCTCACTACCG 31
||||||||.||||||||||||||||||||||
Sbjct 963 TAAGGTTGGGTATCGTCGTGGGACTTGGAAATTTGTTGTTTCCATGAAATCCTGCGCAGTGTCGCTCACTACCG 1036
Query 32 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 1110
Query 106 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 1184
Query 180 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGG---------------------------TAAAAGC-- 224
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1185 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGGCTGTTCGCTGCTACGAATCTTTAATCTTAAAAGCTG 1258
Query 225 AACCAGACGCAAAG------------TCTTT---------GGTCCGCACTTTGCTCTACCAAGGCCCCGCGTT- 276
| |.|.|||| ||||| ||| ||||| ||| ||.|..|||
Sbjct 1259 A-----AGGAAAAGTGGAGTCTGACTTCTTTTGCCAATTAGGT---CACTT--------CAA--CCTCTTGTTG 1314
Query 277 ----------------CCTTACCGCC----CAGCCAG-TATT-TATTTT---GGCT--CTGCTCCATGGCCAAG 323
|.|||.|..| ||| || |||| .|.||| |||| ||.| |||
Sbjct 1315 GAAGATTATTCAAAAGCATTATCTGCATATCAG--AGATATTACAGTTTACAGGCTGACTAC----TGG----- 1377
Query 324 GGGTCGGAAAAGTGTTTCTTGCCTTTGCTGTCCCCGTAC-TCTGGAATACTTCGCCCCTTGCTCCAGA-CTCCC 395
||||||| .||.||||||| ||| ||| ||| ||||
Sbjct 1378 ---------AAGTGTT------------AGTTCCCGTACTTCT---------------TTG----AGATCTCC- 1410
Query 396 TTCTACTCTGAGGAAAAAAAAAATCGGACGCTTTGGGACCGGGCTAAACCG----------------------- 446
|.||.|.| ||||||.||.|...|||.||.|| |.||||.|
Sbjct 1411 -TTTAATTT--GGAAAATAAGATGGGGAGGCCTT---------CCAAACAGAATTTCATAGGAATGCTGCGTTT 1472
Query 447 -----------------GGTCTAC----ACCAC-ATGCCTGTTACTT--------------------------- 471
||||||| ||.|| ||||.| ||..||
Sbjct 1473 TTATATGGCCTTGGTTTGGTCTACTTCTACTACAATGCAT-TTCATTGGGCAATTAAAGCATTTCAAGATGTCC 1545
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1546 TTTATGTTGACCCCAGCTTTTGTCGAGCCAAGGAAATTCATTTACGACTTGGGCTCATGTTCAAAGTGAACACA 1619
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1620 GACTACAAGTCTAGTTTAAAGCATTTTCAGTTAGCCTTGATTGACTGTAATCCATGTACTTTGTCCAATGCTGA 1693
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1694 AATTCAATTTCATATTGCCCATTTGTATGAAACCCAGAGGAAGTATCATTCTGCAAAGGAGGCATATGAACAAC 1767
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1768 TTTTGCAGACAGAAAACCTTCCTGCACAAGTAAAAGCAACTGTATTGCAACAGTTAGGTTGGATGCATCATAAT 1841
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1842 ATGGATCTAGTAGGAGACAAAGCCACAAAGGAAAGCTATGCTATTCAGTATCTCCAAAAGTCTTTGGAGGCAGA 1915
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1916 TCCTAATTCTGGCCAATCGTGGTATTTTCTTGGAAGGTGTTATTCAAGTATTGGGAAAGTTCAGGATGCCTTTA 1989
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1990 TATCTTACAGGCAATCTATTGATAAATCAGAAGCAAGTGCAGATACATGGTGTTCAATAGGTGTGTTGTATCAG 2063
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2064 CAGCAAAATCAGCCTATGGATGCTTTACAGGCATATATTTGTGCTGTACAATTGGACCATGGGCATGCCGCAGC 2137
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2138 CTGGATGGACCTAGGTACTCTCTATGAATCCTGCAATCAACCTCAAGATGCCATTAAATGCTACCTAAATGCAG 2211
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2212 CTAGAAGCAAACGTTGTAGTAATACCTCTACGCTTGCTGCAAGAATTAAATTTCTACAGAATGGTTCTGATAAC 2285
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2286 TGGAATGGTGGCCAGAGTCTTTCACATCATCCAGTACAGCAAGTTTATTCGTTGTGTTTGACACCACAGAAATT 2359
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2360 ACAGCACTTGGAACAACTGCGAGCAAATAGAGATAATTTAAATCCAGCACAGAAGCATCAGCTGGAACAGTTAG 2433
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2434 AAAGTCAGTTTGTCTTAATGCAGCAAATGAGACACAAAGAAGTTGCTCAGGGGCTTCATAAAAGTCAGAGTTCA 2507
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2508 TGTTTGTCAGGACCTAATGAAGAACAACCTCTGTTTTCCACTGGGTCAGCCCAGTATCACCAGGCAACTAGCAC 2581
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2582 TGGTATTAAGAAGGCGAATGAACATCTCACTCTGCCTAGTAATTCAGTACCACAGGGGGATGCTGACAGTCACC 2655
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2656 TCTCCTGTCATACTGCTACCTCAGGTGGACAACAAGGCATTATGTTTACCAAAGAGAGCAAGCCTTCAAAAAAT 2729
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2730 AGATCCTTGGTGCCTGAAACAAGCAGGCATACTGGAGACACATCTAATGGCTGTGCTGATGTCAAGGGACTTTC 2803
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2804 TAATCATGTTCATCAGTTGATAGCAGATGCTGTTTCCAGTCCTAACCATGGAGATTCACCAAATTTATTAATTG 2877
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2878 CAGACAATCCTCAGCTCTCTGCTTTGTTGATTGGAAAAGCCAATGGCAATGTGGGTACTGGAACCTGTGACAAA 2951
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2952 GTGAATAATATTCACCCAGCTGTTCATACAAAGACTGATCATTCTGTTGCCTCTTCACCCTCTTCAGCCATTTC 3025
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3026 CACAGCAACACCTTCTCCTAAATCCACTGAGCAGAGAAGCATAAACAGTGTTACCAGCCTTAACAGTCCTCACA 3099
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3100 GTGGATTACACACAGTCAATGGAGAGGGGCTGGGGAAGTCACAGAGCTCTACAAAAGTAGACCTGCCTTTAGCT 3173
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3174 AGCCACAGATCTACTTCTCAGATCTTACCATCAATGTCAGTGTCTATATGCCCCAGTTCAACAGAAGTTCTGAA 3247
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3248 AGCATGCAGGAATCCAGGTAAAAATGGCTTGTCTAATAGCTGCATTTTGTTAGATAAATGTCCACCTCCAAGAC 3321
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3322 CACCAACTTCACCATACCCACCCTTGCCAAAGGACAAGTTGAATCCACCCACACCTAGTATTTACTTGGAAAAT 3395
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3396 AAACGTGATGCTTTCTTTCCTCCATTACATCAATTTTGTACAAATCCAAAAAACCCTGTTACAGTAATACGTGG 3469
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3470 CCTTGCTGGAGCTCTTAAATTAGATCTTGGACTTTTCTCTACCAAAACTTTGGTAGAAGCTAACAATGAACATA 3543
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3544 TGGTAGAAGTGAGGACACAGTTGCTGCAACCAGCAGATGAAAACTGGGATCCCACTGGAACAAAGAAAATCTGG 3617
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3618 CGTTGTGAAAGCAATAGATCTCATACTACAATTGCCAAATACGCACAATACCAGGCTTCCTCCTTCCAGGAATC 3691
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3692 ATTGAGAGAAGAAAATGAGAAAAGAACACAACACAAAGATCATTCAGATAACGAATCCACATCTTCAGAGAATT 3765
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3766 CTGGAAGGAGAAGGAAAGGACCTTTTAAAACCATAAAATTTGGGACCAACATTGACCTCTCTGATAACAAAAAG 3839
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3840 TGGAAGTTGCAGTTACATGAACTGACTAAACTTCCTGCTTTTGCGCGTGTGGTGTCAGCAGGAAATCTTCTAAC 3913
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3914 CCATGTTGGGCATACCATTCTGGGCATGAATACAGTACAACTGTATATGAAAGTTCCAGGGAGTCGGACACCAG 3987
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3988 GTCACCAAGAAAATAACAACTTCTGCTCTGTTAACATAAATATTGGTCCAGGAGATTGTGAATGGTTTGTTGTA 4061
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4062 CCTGAAGATTATTGGGGTGTTCTGAATGACTTCTGTGAAAAGATTCAGAACAGCAGTAGAGGATGATTTCTGCT 4135
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4136 CTCCTTCTCACCCCTGACTCAGGAATTGAGAGAAGAAATAATTTGAATTTTTTAATGAGTTCTTGGTGGCCCAA 4209
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4210 CCTTGAAGATCTTTATGAAGCAAATGTCCCTGTGTATAGATTTATTCAGCGACCTGGAGATTTGGTCTGGATAA 4283
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4284 ATGCAGGCACTGTGCATTGGGTTCAAGCTGTTGGCTGGTGCAATAACATTGCCTGGAATGTTGGTCCACTTACA 4357
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4358 GCCTGCCAGTATAAATTGGCAGTGGAACGGTATGAATGGAACAAATTGAAAAGTGTGAAGTCACCAGTACCCAT 4431
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4432 GGTGCATCTTTCCTGGAATATGGCACGAAATATCAAAGTCTCAGATCCAAAGCTTTTTGAAATGATTAAGTATT 4505
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4506 GTCTTTTGAAAATTCTGAAGCAATATCAGACATTGAGAGAAGCTCTTGTTGCAGCAGGAAAAGAGGTTATATGG 4579
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4580 CATGGGCGGACAAATGATGAACCAGCTCATTACTGTAGCATTTGTGAGGTGGAGGTTTTTAATCTGCTTTTTGT 4653
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4654 CACTAATGAAAGCAATACTCAAAAAACCTACATAGTACATTGCCATGATTGTGCACGAAAAACAAGCAAAAGTT 4727
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4728 TGGAAAATTTTGTGGTGCTCGAACAGTACAAAATGGAGGACCTAATCCAAGTTTATGATCAATTTACACTAGCT 4801
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4802 CTTTCATTATCATCCTCATCTTGATATAGTTCCATGAATATTAAATGAGATTATTTCTGCTCTTCAGGAAATTT 4875
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4876 CTGCACCACTGGTTTTGTAGCTGTTTCATAAAACTGTTGACTAAAAGCTATGTCTATGCAACCTTCCAAGAATA 4949
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4950 GTATGTCAAGCAACTGGACACAGTGCTGCCTCTGCTTCAGGACTTAACATGCTGATCCAGCTGTACTTCAGAAA 5023
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5024 AATAATATTAATCATATGTTTTGTGTACGTATGACAAACTGTCAAAGTGACACAGAATACTGATTTGAAGATAG 5097
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5098 CCTTTTTTATGTTTCTCTATTTCTGGGCTGATGAATTAATATTCATTTGTATTTTAACCCTGCAGAATTTTCCT 5171
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5172 TAGTTAAAAACACTTTCCTAGCTGGTCATTTCTTCATAAGATAGCAAATTTAAATCTCTCCTCGATCAGCTTTT 5245
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5246 AAAAAATGTGTACTATTATCTGAGGAAGTTTTTTACTGCTTTATGTTTTTGTGTGTTTTGAGGCCATGATGATT 5319
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5320 ACATTTGTGGTTCCAAAATAATTTTTTTAAATATTAATAGCCCATATACAAAGATAATGGATTGCACATAGACA 5393
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5394 AAGAAATAAACTTCAGATTTGTGATTTTTGTTTCTAAACTTGATACAGATTTACACTATTTATAAATACGTATT 5467
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5468 TATTGCCTGAAAATATTTGTGAATGGAATGTTGTTTTTTTCCAGACGTAACTGCCATTAAATACTAAGGAGTTC 5541
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5542 TGTAGTTTTAAACACTACTCCTATTACATTTTATATGTGTAGATAAAACTGCTTAGTATTATACAGAAATTTTT 5615
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5616 ATTAAAATTGTTAAATGTTTAAAGGGTTTCCCAATGTTTGAGTTTAAAAAAGACTTTCTGAAAAAATCCACTTT 5689
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5690 TTGTTCATTTTCAAACCTAATGATTATATGTATTTTATATGTGTGTGTATGTGTACACACATGTATAATATATA 5763
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5764 CAGAAACCTCGATATATAATTGTATAGATTTTAAAAGTTTTATTTTTTACATCTATGGTAGTTTTTGAGGTGCC 5837
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5838 TATTATAAAGTATTACGGAAGTTTGCTGTTTTTAAAGTAAATGTCTTTTAGTGTGATTTATTAAGTTGTAGTCA 5911
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5912 CCATAGTGATAGCCCATAAATAATTGCTGGAAAATTGTATTTTATAACAGTAGAAAACATATAGTCAGTGAAGT 5985
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5986 AAATATTTTAAAGGAAACATTATATAGATTTGATAAATGTTGTTTATAATTAAGAGTTTCTTATGGAAAAGAGA 6059
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6060 TTCAGAATGATAACCTCTTTTAGAGAACAAATAAGTGACTTATTTTTTTAAAGCTAGATGACTTTGAAATGCTA 6133
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6134 TACTGTCCTGCTTGTACAACATGGTTTGGGGTGAAGGGGAGGAAAGTATTAAAAAATCTATATCGCTAGTAAAT 6207
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6208 TGTAATAAGTTCTATTAAAACTTGTATTTCATATGAAAAATTTGCTAATTTAATATTAACTCATTTGATAATAA 6281
Query 472 --------------------- 471
Sbjct 6282 TACTTGTCTTTTCTACCTCTC 6302
