Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_11214
- Subject:
- NR_047635.1
- Aligned Length:
- 6387
- Identities:
- 395
- Gaps:
- 5953
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTCATCGTTTGTTGTTTAGATAATATCATGAACTGATAAATGCAGTTGCCACGTTGATTCCCTAGGGCCTGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTACCGACTGAGGTCATAAGATATTATGCCTTCTCTTTAGACTTGGTCAGTGGAGAGGAAATGGGCAAAGAACC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCCTATGGAGGTGACAAGGCCTTAGGGCCAAAAGTCTTGAGGGTGAAGGTTTAGGGCCTGCGCAGCTTCCCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCATGCCCCGCAAGGTCTCGCATTCGCAAGGCTTGTGACAGTGGGAGCCTCATTACGGACTCTCCTAAAGTCCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGGTGTCCTCTTTTCGCATTTGCGCCCCGTGGGTGATGCCCGATGCCGCCCTTCCCATCGCTCTCTTCCCCTTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAGCGTATCGCAACTGCAAAAACACCCAGCACAGACACTCCATTTTCTATCTTAATGCATTTAACTAGCACAAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTACAGGTTGTTCCATCCCAGAGACTACCCTTTTCTCCATAGACGTGACCATCAACCAACCAGCGGTCAGAATC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGTCAGCCTCTGTCATGTTCCTAGGTCCTTGGCGAACTGGCTGGGCGGGGTCCCAGCAGCCTAGGAGTACAGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAGCAATGCCTGACGTAAGTCAACAAAGATCACGTGAGACGAATCAGTCGCCTAGATTGGCTACAACTAAGTGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTGGGAGCGGGGAGGTCGCGGCGGCTGCGTGGGGTTCGCCCGTGACACAATTACAACTTTGTGCTGGTGCTGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAAGTTTGTGATTTTAAGAAATTCTGCTGTGCTCTCCAGCACTGCGAGCTTCTGCCTTCCCTGTAGTTTCCCAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATGTGATCCAGGTAGCCGAGTTCCGCTGCCCGTGCTTCGGTAGCTTAAGTCTTTGCCTCAGCTTTTTTCCTTGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCCGCTGAGGAGGCGATAAAATTGGCGTCACAGTCTCAAGCAGCGATTGAAGGCGTCTTTTCAACTACTCGAT 962
Query 1 -------------------------------------------ATGAAATCGTGCGCAGTGTCGCTCACTACCG 31
||||||||.||||||||||||||||||||||
Sbjct 963 TAAGGTTGGGTATCGTCGTGGGACTTGGAAATTTGTTGTTTCCATGAAATCCTGCGCAGTGTCGCTCACTACCG 1036
Query 32 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CCGCTGTTGCCTTCGGTGATGAGGCAAAGAAAATGGCGGAAGGAAAAGCGAGCCGCGAGAGTGAAGAGGAGTCT 1110
Query 106 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTTAGCCTGACAGTCGAGGAAAGGGAGGCGCTTGGTGGCATGGACAGCCGTCTCTTCGGGTTCGTGAGGCTTCA 1184
Query 180 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGG---------------------------TAAAAGC-- 224
|||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1185 TGAAGATGGCGCCAGAACGAAGACCCTACTAGGCAAGGCTGTTCGCTGCTACGAATCTTTAATCTTAAAAGCTG 1258
Query 225 AACCAGACGCAAAG------------TCTTT---------GGTCCGCACTT----------------------- 254
| |.|.|||| ||||| ||| |||||
Sbjct 1259 A-----AGGAAAAGTGGAGTCTGACTTCTTTTGCCAATTAGGT---CACTTCAACCTCTTGTTGGAAGATTATT 1324
Query 255 -------------TGC------------------TCTACCAAGGC----------------CCCGCGTTCCT-T 280
||| |.||| |||| .|.|||||..| |
Sbjct 1325 CAAAAGCATTATCTGCATATCAGAGATATTACAGTTTAC--AGGCTGACTACTGGAAGAATGCTGCGTTTTTAT 1396
Query 281 ACCGCC----------------------CA--------------GCCAGTA------------------TTTAT 300
|..||| || ||.|.|| |||||
Sbjct 1397 ATGGCCTTGGTTTGGTCTACTTCTACTACAATGCATTTCATTGGGCAATTAAAGCATTTCAAGATGTCCTTTAT 1470
Query 301 TTTG------GCTCTGCTCCATGGCCAAGG-----------------GGTCGGA-----AAAGTG--------- 337
.||| |||.|..||.| ||||||| ||.|..| ||||||
Sbjct 1471 GTTGACCCCAGCTTTTGTCGA--GCCAAGGAAATTCATTTACGACTTGGGCTCATGTTCAAAGTGAACACAGAC 1542
Query 338 ---------------------TTTC---TTGCCT---TTG-CTG---TCCCCGTACT----------CTGGAAT 370
|||| |.|||| ||| ||| |||..||||| |||.|||
Sbjct 1543 TACAAGTCTAGTTTAAAGCATTTTCAGTTAGCCTTGATTGACTGTAATCCATGTACTTTGTCCAATGCTGAAAT 1616
Query 371 ---ACTTC-----GCCCCTTGCT-------CCAGA------CTCCCTTCTACTCTG---AGGA--------AAA 412
|.||| ||||.||..| ||||| .|| |.|||| |||| ||.
Sbjct 1617 TCAATTTCATATTGCCCATTTGTATGAAACCCAGAGGAAGTATC------ATTCTGCAAAGGAGGCATATGAAC 1684
Query 413 AAAAAATCGGACGCTTTGG--GACCGGGCTAAACCGGGT--CTACAC---CACATGC--CTGTTACTT------ 471
|| ||||.| |||.| .||||| | ||.||| .|.|.|| |||| .||
Sbjct 1685 AA-----------CTTTTGCAGACAG---AAAACC---TTCCTGCACAAGTAAAAGCAACTGT--ATTGCAACA 1739
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1740 GTTGGATGCATCATAATATGGATCTAGTAGGAGACAAAGCCACAAAGGAAAGCTATGCTATTCAGTATCTCCAA 1813
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1814 AAGTCTTTGGAGGCAGATCCTAATTCTGGCCAATCGTGGTATTTTCTTGGAAGGTGTTATTCAAGTATTGGGAA 1887
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1888 AGTTCAGGATGCCTTTATATCTTACAGGCAATCTATTGATAAATCAGAAGCAAGTGCAGATACATGGTGTTCAA 1961
Query 472 -------------------------------------------------------------------------- 471
Sbjct 1962 TAGGTGTGTTGTATCAGCAGCAAAATCAGCCTATGGATGCTTTACAGGCATATATTTGTGCTGTACAATTGGAC 2035
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2036 CATGGGCATGCCGCAGCCTGGATGGACCTAGGTACTCTCTATGAATCCTGCAATCAACCTCAAGATGCCATTAA 2109
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2110 ATGCTACCTAAATGCAGCTAGAAGCAAACGTTGTAGTAATACCTCTACGCTTGCTGCAAGAATTAAATTTCTAC 2183
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2184 AGAATGGTTCTGATAACTGGAATGGTGGCCAGAGTCTTTCACATCATCCAGTACAGCAAGTTTATTCGTTGTGT 2257
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2258 TTGACACCACAGAAATTACAGCACTTGGAACAACTGCGAGCAAATAGAGATAATTTAAATCCAGCACAGAAGCA 2331
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2332 TCAGCTGGAACAGTTAGAAAGTCAGTTTGTCTTAATGCAGCAAATGAGACACAAAGAAGTTGCTCAGGTACGAA 2405
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2406 CTACTGGAATTCATAACGGGGCCATAACTGATTCATCACTGCCTACAAACTCTGTCTCTAATCGACAACCACAT 2479
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2480 GGTGCTCTGACCAGAGTATCTAGCGTCTCTCAGCCTGGAGTTCGCCCTGCTTGTGTTGAAAAACTTTTGTCCAG 2553
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2554 TGGAGCTTTTTCTGCAGGCTGTATTCCTTGTGGCACATCAAAAATTCTAGGAAGTACAGACACTATCTTGCTAG 2627
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2628 GCAGTAATTGTATAGCAGGAAGTGAAAGTAATGGAAATGTGCCTTACCTGCAGCAAAATACACACACTCTACCT 2701
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2702 CATAATCATACAGACCTGAACAGCAGCACAGAAGAGCCATGGAGAAAACAGCTATCTAACTCCGCTCAGGGGCT 2775
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2776 TCATAAAAGTCAGAGTTCATGTTTGTCAGGACCTAATGAAGAACAACCTCTGTTTTCCACTGGGTCAGCCCAGT 2849
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2850 ATCACCAGGCAACTAGCACTGGTATTAAGAAGGCGAATGAACATCTCACTCTGCCTAGTAATTCAGTACCACAG 2923
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2924 GGGGATGCTGACAGTCACCTCTCCTGTCATACTGCTACCTCAGGTGGACAACAAGGCATTATGTTTACCAAAGA 2997
Query 472 -------------------------------------------------------------------------- 471
Sbjct 2998 GAGCAAGCCTTCAAAAAATAGATCCTTGGTGCCTGAAACAAGCAGGCATACTGGAGACACATCTAATGGCTGTG 3071
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3072 CTGATGTCAAGGGACTTTCTAATCATGTTCATCAGTTGATAGCAGATGCTGTTTCCAGTCCTAACCATGGAGAT 3145
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3146 TCACCAAATTTATTAATTGCAGACAATCCTCAGCTCTCTGCTTTGTTGATTGGAAAAGCCAATGGCAATGTGGG 3219
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3220 TACTGGAACCTGTGACAAAGTGAATAATATTCACCCAGCTGTTCATACAAAGACTGATCATTCTGTTGCCTCTT 3293
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3294 CACCCTCTTCAGCCATTTCCACAGCAACACCTTCTCCTAAATCCACTGAGCAGAGAAGCATAAACAGTGTTACC 3367
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3368 AGCCTTAACAGTCCTCACAGTGGATTACACACAGTCAATGGAGAGGGGCTGGGGAAGTCACAGAGCTCTACAAA 3441
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3442 AGTAGACCTGCCTTTAGCTAGCCACAGATCTACTTCTCAGATCTTACCATCAATGTCAGTGTCTATATGCCCCA 3515
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3516 GTTCAACAGAAGTTCTGAAAGCATGCAGGAATCCAGGTAAAAATGGCTTGTCTAATAGCTGCATTTTGTTAGAT 3589
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3590 AAATGTCCACCTCCAAGACCACCAACTTCACCATACCCACCCTTGCCAAAGGACAAGTTGAATCCACCCACACC 3663
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3664 TAGTATTTACTTGGAAAATAAACGTGATGCTTTCTTTCCTCCATTACATCAATTTTGTACAAATCCAAAAAACC 3737
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3738 CTGTTACAGTAATACGTGGCCTTGCTGGAGCTCTTAAATTAGATCTTGGACTTTTCTCTACCAAAACTTTGGTA 3811
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3812 GAAGCTAACAATGAACATATGGTAGAAGTGAGGACACAGTTGCTGCAACCAGCAGATGAAAACTGGGATCCCAC 3885
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3886 TGGAACAAAGAAAATCTGGCGTTGTGAAAGCAATAGATCTCATACTACAATTGCCAAATACGCACAATACCAGG 3959
Query 472 -------------------------------------------------------------------------- 471
Sbjct 3960 CTTCCTCCTTCCAGGAATCATTGAGAGAAGAAAATGAGAAAAGAACACAACACAAAGATCATTCAGATAACGAA 4033
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4034 TCCACATCTTCAGAGAATTCTGGAAGGAGAAGGAAAGGACCTTTTAAAACCATAAAATTTGGGACCAACATTGA 4107
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4108 CCTCTCTGATAACAAAAAGTGGAAGTTGCAGTTACATGAACTGACTAAACTTCCTGCTTTTGCGCGTGTGGTGT 4181
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4182 CAGCAGGAAATCTTCTAACCCATGTTGGGCATACCATTCTGGGCATGAATACAGTACAACTGTATATGAAAGTT 4255
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4256 CCAGGGAGTCGGACACCAGGTCACCAAGAAAATAACAACTTCTGCTCTGTTAACATAAATATTGGTCCAGGAGA 4329
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4330 TTGTGAATGGTTTGTTGTACCTGAAGATTATTGGGGTGTTCTGAATGACTTCTGTGAAAAAAATAATTTGAATT 4403
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4404 TTTTAATGAGTTCTTGGTGGCCCAACCTTGAAGATCTTTATGAAGCAAATGTCCCTGTGTATAGATTTATTCAG 4477
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4478 CGACCTGGAGATTTGGTCTGGATAAATGCAGGCACTGTGCATTGGGTTCAAGCTGTTGGCTGGTGCAATAACAT 4551
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4552 TGCCTGGAATGTTGGTCCACTTACAGCCTGCCAGTATAAATTGGCAGTGGAACGGTATGAATGGAACAAATTGA 4625
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4626 AAAGTGTGAAGTCACCAGTACCCATGGTGCATCTTTCCTGGAATATGGCACGAAATATCAAAGTCTCAGATCCA 4699
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4700 AAGCTTTTTGAAATGATTAAGTATTGTCTTTTGAAAATTCTGAAGCAATATCAGACATTGAGAGAAGCTCTTGT 4773
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4774 TGCAGCAGGAAAAGAGGTTATATGGCATGGGCGGACAAATGATGAACCAGCTCATTACTGTAGCATTTGTGAGG 4847
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4848 CTCTTTCATTATCATCCTCATCTTGATATAGTTCCATGAATATTAAATGAGATTATTTCTGCTCTTCAGGAAAT 4921
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4922 TTCTGCACCACTGGTTTTGTAGCTGTTTCATAAAACTGTTGACTAAAAGCTATGTCTATGCAACCTTCCAAGAA 4995
Query 472 -------------------------------------------------------------------------- 471
Sbjct 4996 TAGTATGTCAAGCAACTGGACACAGTGCTGCCTCTGCTTCAGGACTTAACATGCTGATCCAGCTGTACTTCAGA 5069
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5070 AAAATAATATTAATCATATGTTTTGTGTACGTATGACAAACTGTCAAAGTGACACAGAATACTGATTTGAAGAT 5143
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5144 AGCCTTTTTTATGTTTCTCTATTTCTGGGCTGATGAATTAATATTCATTTGTATTTTAACCCTGCAGAATTTTC 5217
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5218 CTTAGTTAAAAACACTTTCCTAGCTGGTCATTTCTTCATAAGATAGCAAATTTAAATCTCTCCTCGATCAGCTT 5291
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5292 TTAAAAAATGTGTACTATTATCTGAGGAAGTTTTTTACTGCTTTATGTTTTTGTGTGTTTTGAGGCCATGATGA 5365
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5366 TTACATTTGTGGTTCCAAAATAATTTTTTTAAATATTAATAGCCCATATACAAAGATAATGGATTGCACATAGA 5439
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5440 CAAAGAAATAAACTTCAGATTTGTGATTTTTGTTTCTAAACTTGATACAGATTTACACTATTTATAAATACGTA 5513
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5514 TTTATTGCCTGAAAATATTTGTGAATGGAATGTTGTTTTTTTCCAGACGTAACTGCCATTAAATACTAAGGAGT 5587
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5588 TCTGTAGTTTTAAACACTACTCCTATTACATTTTATATGTGTAGATAAAACTGCTTAGTATTATACAGAAATTT 5661
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5662 TTATTAAAATTGTTAAATGTTTAAAGGGTTTCCCAATGTTTGAGTTTAAAAAAGACTTTCTGAAAAAATCCACT 5735
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5736 TTTTGTTCATTTTCAAACCTAATGATTATATGTATTTTATATGTGTGTGTATGTGTACACACATGTATAATATA 5809
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5810 TACAGAAACCTCGATATATAATTGTATAGATTTTAAAAGTTTTATTTTTTACATCTATGGTAGTTTTTGAGGTG 5883
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5884 CCTATTATAAAGTATTACGGAAGTTTGCTGTTTTTAAAGTAAATGTCTTTTAGTGTGATTTATTAAGTTGTAGT 5957
Query 472 -------------------------------------------------------------------------- 471
Sbjct 5958 CACCATAGTGATAGCCCATAAATAATTGCTGGAAAATTGTATTTTATAACAGTAGAAAACATATAGTCAGTGAA 6031
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6032 GTAAATATTTTAAAGGAAACATTATATAGATTTGATAAATGTTGTTTATAATTAAGAGTTTCTTATGGAAAAGA 6105
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6106 GATTCAGAATGATAACCTCTTTTAGAGAACAAATAAGTGACTTATTTTTTTAAAGCTAGATGACTTTGAAATGC 6179
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6180 TATACTGTCCTGCTTGTACAACATGGTTTGGGGTGAAGGGGAGGAAAGTATTAAAAAATCTATATCGCTAGTAA 6253
Query 472 -------------------------------------------------------------------------- 471
Sbjct 6254 ATTGTAATAAGTTCTATTAAAACTTGTATTTCATATGAAAAATTTGCTAATTTAATATTAACTCATTTGATAAT 6327
Query 472 ----------------------- 471
Sbjct 6328 AATACTTGTCTTTTCTACCTCTC 6350
